PDB Short entry for 1GOY HEADER HYDROLASE 26-OCT-01 1GOY TITLE HYDROLASE(ENDORIBONUCLEASE)RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) TITLE 2 (E.C.3.1.27.-) COMPLEXED WITH GUANOSINE-3'-PHOSPHATE (3'-GMP) CAVEAT 1GOY 3GP A 201 HAS WRONG CHIRALITY AT ATOM C1' COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BINASE, G SPECIFIC ENDONUCLEASE; COMPND 5 EC: 3.1.27.3; COMPND 6 OTHER_DETAILS: RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) COMPLEXED COMPND 7 WITH GUANOSINE-3'-PHOSPHATE (3'-GMP) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS INTERMEDIUS; SOURCE 3 ORGANISM_TAXID: 1400; SOURCE 4 OTHER_DETAILS: MICROORGANISM KEYWDS HYDROLASE, ENDORIBONUCLEASE, NUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.POLYAKOV,A.A.LEBEDEV,A.G.PAVLOVSKY,R.G.SANISHVILI,G.G.DODSON REVDAT 5 08-MAY-24 1GOY 1 REMARK REVDAT 4 12-JUL-17 1GOY 1 REVDAT 3 24-FEB-09 1GOY 1 VERSN REVDAT 2 03-MAY-02 1GOY 1 JRNL REVDAT 1 29-NOV-01 1GOY 0 JRNL AUTH K.M.POLYAKOV,A.A.LEBEDEV,A.L.OKOROKOV,K.I.PANOV,A.A.SCHULGA, JRNL AUTH 2 A.G.PAVLOVSKY,M.Y.A.KARPEISKY,G.G.DODSON JRNL TITL THE STRUCTURE OF SUBSTRATE-FREE MICROBIAL RIBONUCLEASE JRNL TITL 2 BINASE AND OF ITS COMPLEXES WITH 3'GMP AND SULFATE IONS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 744 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 11976484 JRNL DOI 10.1107/S0907444902003207 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SEVCIK,R.G.SANISHVILI,A.G.PAVLOVSKY,K.M.POLYAKOV REMARK 1 TITL COMPARISON OF ACTIVE SITES OF SOME MICROBIAL RIBONUCLEASES: REMARK 1 TITL 2 STRUCTURAL BASIS FOR GUANYLIC SPECIFICITY REMARK 1 REF TRENDS BIOCHEM.SCI. V. 15 158 1990 REMARK 1 REFN ISSN 0968-0004 REMARK 1 PMID 2160143 REMARK 1 DOI 10.1016/0968-0004(90)90217-Y REMARK 1 REFERENCE 2 REMARK 1 AUTH A.G.PAVLOVSKY,R.G.SANISHVILI,S.N.BORISOVA,B.V.STROKOPYTOV, REMARK 1 AUTH 2 A.A.VAGIN,N.K.CHEPURNOVA,B.K.VAINSHTEIN REMARK 1 TITL THE CRYSTALL STRUCTURE OF BACTERIAL RIBONUCLEASE BINASE REMARK 1 REF KRISTALLOGRAFIYA(RUSSIAN) V. 34 137 1989 REMARK 1 REFN ISSN 0023-4761 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.G.PAVLOVSKY,A.A.VAGIN,B.K.VAINSHTEIN,N.K.CHEPURNOVA, REMARK 1 AUTH 2 M.Y.KARPEISKY REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF RIBONUCLESE FROM BALILLUS REMARK 1 TITL 2 INTERMEDIUS 7P AT 3A RESOLUTION REMARK 1 REF FEBS LETT. V. 162 167 1983 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 6413257 REMARK 1 DOI 10.1016/0014-5793(83)81071-0 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.HILL,G.DODSON,U.HEINEMANN,W.SAENGER,Y.MITSUI,K.NAKAMURA, REMARK 1 AUTH 2 S.BORISOV,G.TISCHENKO,K.POLYAKOV,S.PAVLOVSKY REMARK 1 TITL THE STRUCTURAL AND SEQUENCE HOMOLOGY OF FAMILY OF MICROBIAL REMARK 1 TITL 2 RIBONUCLEASES REMARK 1 REF TRENDS BIOCHEM.SCI. V. 8 364 1983 REMARK 1 REFN ISSN 0968-0004 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.00 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 437 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.682 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1066 ; 1.014 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1706 ; 1.783 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 743 ; 2.681 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 749 ; 4.176 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NONE REMARK 4 REMARK 4 1GOY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1290008758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : SYTNEX P21 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: BLANC, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.69000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.73000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 16.73000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.69000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -7 REMARK 465 THR A -6 REMARK 465 PRO A -5 REMARK 465 VAL A -4 REMARK 465 THR A -3 REMARK 465 LYS A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 1 REMARK 465 PHE B -7 REMARK 465 THR B -6 REMARK 465 PRO B -5 REMARK 465 VAL B -4 REMARK 465 THR B -3 REMARK 465 LYS B -2 REMARK 465 ALA B -1 REMARK 465 ALA B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 67 CB OG REMARK 470 SER B 67 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 18 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 92 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 100 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 4 21.54 -141.93 REMARK 500 SER A 37 -18.94 108.61 REMARK 500 SER A 67 -12.84 87.47 REMARK 500 VAL A 78 -61.71 -130.94 REMARK 500 ASN B 4 14.53 -146.25 REMARK 500 SER B 67 -14.41 80.69 REMARK 500 ASN B 83 -156.75 -95.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 386 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 387 DISTANCE = 8.02 ANGSTROMS REMARK 525 HOH B 395 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 396 DISTANCE = 7.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 W 99 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 W 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 W 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3GP A 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BUJ RELATED DB: PDB REMARK 900 STRUCTURE OF BINASE IN SOLUTION REMARK 900 RELATED ID: 2RBI RELATED DB: PDB REMARK 900 STRUCTURE OF BINASE MUTANT HIS 101 ASN REMARK 900 RELATED ID: 1GOU RELATED DB: PDB REMARK 900 STRUCTURE OF RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) UNLIGANDED REMARK 900 FORM REMARK 900 RELATED ID: 1GOV RELATED DB: PDB REMARK 900 STRUCTURE OF RIBONUCLEASE BI(G SPECIFIC ENDONUCLEASE) COMPLEXED REMARK 900 WITH SULFATE IONS DBREF 1GOY A -7 -1 PDB 1GOY 1GOY -7 -1 DBREF 1GOY A 1 109 UNP P00649 RN_BACIN 54 162 DBREF 1GOY B -7 -1 PDB 1GOY 1GOY -7 -1 DBREF 1GOY B 1 109 UNP P00649 RN_BACIN 54 162 SEQADV 1GOY ASN A 21 UNP P00649 ASP 74 CONFLICT SEQADV 1GOY ASP A 22 UNP P00649 ASN 75 CONFLICT SEQADV 1GOY ASP A 40 UNP P00649 ASN 93 CONFLICT SEQADV 1GOY GLY A 66 UNP P00649 SER 119 CONFLICT SEQADV 1GOY SER A 67 UNP P00649 GLY 120 CONFLICT SEQADV 1GOY ASN B 21 UNP P00649 ASP 74 CONFLICT SEQADV 1GOY ASP B 22 UNP P00649 ASN 75 CONFLICT SEQADV 1GOY ASP B 40 UNP P00649 ASN 93 CONFLICT SEQADV 1GOY GLY B 66 UNP P00649 SER 119 CONFLICT SEQADV 1GOY SER B 67 UNP P00649 GLY 120 CONFLICT SEQRES 1 A 116 PHE THR PRO VAL THR LYS ALA ALA VAL ILE ASN THR PHE SEQRES 2 A 116 ASP GLY VAL ALA ASP TYR LEU ILE ARG TYR LYS ARG LEU SEQRES 3 A 116 PRO ASN ASP TYR ILE THR LYS SER GLN ALA SER ALA LEU SEQRES 4 A 116 GLY TRP VAL ALA SER LYS GLY ASP LEU ALA GLU VAL ALA SEQRES 5 A 116 PRO GLY LYS SER ILE GLY GLY ASP VAL PHE SER ASN ARG SEQRES 6 A 116 GLU GLY ARG LEU PRO SER ALA GLY SER ARG THR TRP ARG SEQRES 7 A 116 GLU ALA ASP ILE ASN TYR VAL SER GLY PHE ARG ASN ALA SEQRES 8 A 116 ASP ARG LEU VAL TYR SER SER ASP TRP LEU ILE TYR LYS SEQRES 9 A 116 THR THR ASP HIS TYR ALA THR PHE THR ARG ILE ARG SEQRES 1 B 116 PHE THR PRO VAL THR LYS ALA ALA VAL ILE ASN THR PHE SEQRES 2 B 116 ASP GLY VAL ALA ASP TYR LEU ILE ARG TYR LYS ARG LEU SEQRES 3 B 116 PRO ASN ASP TYR ILE THR LYS SER GLN ALA SER ALA LEU SEQRES 4 B 116 GLY TRP VAL ALA SER LYS GLY ASP LEU ALA GLU VAL ALA SEQRES 5 B 116 PRO GLY LYS SER ILE GLY GLY ASP VAL PHE SER ASN ARG SEQRES 6 B 116 GLU GLY ARG LEU PRO SER ALA GLY SER ARG THR TRP ARG SEQRES 7 B 116 GLU ALA ASP ILE ASN TYR VAL SER GLY PHE ARG ASN ALA SEQRES 8 B 116 ASP ARG LEU VAL TYR SER SER ASP TRP LEU ILE TYR LYS SEQRES 9 B 116 THR THR ASP HIS TYR ALA THR PHE THR ARG ILE ARG HET 3GP A 201 24 HET SO4 A 202 5 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM 3GP GUANOSINE-3'-MONOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 3GP C10 H14 N5 O8 P FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *183(H2 O) HELIX 1 1 THR A 5 LYS A 17 1 13 HELIX 2 2 THR A 25 LEU A 32 1 8 HELIX 3 3 ASP A 40 ALA A 45 1 6 HELIX 4 4 THR B 5 LYS B 17 1 13 HELIX 5 5 THR B 25 LEU B 32 1 8 HELIX 6 6 ASP B 40 ALA B 45 1 6 SHEET 1 AA 6 TYR A 23 ILE A 24 0 SHEET 2 AA 6 SER A 49 PHE A 55 1 O SER A 49 N ILE A 24 SHEET 3 AA 6 TRP A 70 ASP A 74 -1 O TRP A 70 N PHE A 55 SHEET 4 AA 6 ARG A 86 SER A 90 -1 O LEU A 87 N ALA A 73 SHEET 5 AA 6 ILE A 95 THR A 98 -1 O TYR A 96 N VAL A 88 SHEET 6 AA 6 THR A 106 ARG A 107 -1 O THR A 106 N LYS A 97 SHEET 1 BA 6 TYR B 23 ILE B 24 0 SHEET 2 BA 6 SER B 49 PHE B 55 1 O SER B 49 N ILE B 24 SHEET 3 BA 6 TRP B 70 ASP B 74 -1 O TRP B 70 N PHE B 55 SHEET 4 BA 6 ARG B 86 SER B 90 -1 O LEU B 87 N ALA B 73 SHEET 5 BA 6 ILE B 95 THR B 98 -1 O TYR B 96 N VAL B 88 SHEET 6 BA 6 THR B 106 ARG B 109 -1 O THR B 106 N LYS B 97 SITE 1 AC1 6 LYS B 26 GLU B 72 ARG B 82 ARG B 86 SITE 2 AC1 6 HIS B 101 TYR B 102 SITE 1 AC2 10 TRP A 34 ALA A 36 SER A 37 LYS A 38 SITE 2 AC2 10 GLY A 39 PHE A 81 ARG A 82 HOH A 307 SITE 3 AC2 10 HOH A 334 HOH A 304 SITE 1 AC3 7 TRP B 34 ALA B 36 GLY B 39 PHE B 81 SITE 2 AC3 7 ARG B 82 HOH B 321 HOH B 308 SITE 1 AC4 12 LYS A 26 VAL A 54 PHE A 55 SER A 56 SITE 2 AC4 12 ASN A 57 ARG A 58 GLU A 59 GLU A 72 SITE 3 AC4 12 ARG A 82 ARG A 86 HIS A 101 TYR A 102 CRYST1 111.380 69.560 33.460 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029886 0.00000