PDB Short entry for 1GQF HEADER HYDROLASE 23-NOV-01 1GQF TITLE CRYSTAL STRUCTURE OF HUMAN PROCASPASE-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CASP-7,APOPTOTIC PROTEASE MCH-3,CMH-1,ICE-LIKE APOPTOTIC COMPND 5 PROTEASE 3,ICE-LAP3; COMPND 6 EC: 3.4.22.60; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP7, MCH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CASPASE-7, HYDROLASE, APOPTOSIS, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR S.RIEDL,W.BODE,P.FUENTES-PRIOR REVDAT 5 13-DEC-23 1GQF 1 REMARK REVDAT 4 07-NOV-18 1GQF 1 COMPND SOURCE JRNL REMARK REVDAT 4 2 1 DBREF SEQADV REVDAT 3 16-SEP-15 1GQF 1 COMPND JRNL REMARK VERSN REVDAT 3 2 1 SEQADV FORMUL MASTER REVDAT 2 24-FEB-09 1GQF 1 VERSN REVDAT 1 04-JAN-02 1GQF 0 JRNL AUTH S.J.RIEDL,P.FUENTES-PRIOR,M.RENATUS,N.KAIRIES,S.KRAPP, JRNL AUTH 2 R.HUBER,G.S.SALVESEN,W.BODE JRNL TITL STRUCTURAL BASIS FOR THE ACTIVATION OF HUMAN PROCASPASE-7. JRNL REF PROC. NATL. ACAD. SCI. V. 98 14790 2001 JRNL REF 2 U.S.A. JRNL REFN ISSN 0027-8424 JRNL PMID 11752425 JRNL DOI 10.1073/PNAS.221580098 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1166291.100 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 19487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3075 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4242 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.14000 REMARK 3 B22 (A**2) : 11.14000 REMARK 3 B33 (A**2) : -22.27000 REMARK 3 B12 (A**2) : 7.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 210.5 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COMPETITION FOR THE LIMITED REMARK 3 INTERMONOMER SPACE (THE "CENTRAL CAVITY") BY THE TWO INTERDOMAIN REMARK 3 LINKERS MANIFESTS ITSELF IN POOR OR AMBIGOUS ELECTRON DENSITY REMARK 3 FOR RESIDUES N-TERMINAL OF ILE321. ALTERNATE CONFORMATIONS, REMARK 3 HOWEVER, ARE NOT SEPARABLE AT THE CURRENT RESOLUTION. ELECTRON REMARK 3 DENSITY IS ALSO POOR OR MISSING FOR RESIDUES THR288 - LYS320 REMARK 3 (THE INTERDOMAIN LINKER), GLY336 - GLY346 (THE SUBSTRATE BINDING REMARK 3 LOOP), AS WELL AS FOR THE INSERTION LOOP GLU381-GLU382. RESIDUES REMARK 3 N-TERMINAL OF PRO149 AND THE C-TERMINAL HISTIDINE TAG ARE REMARK 3 FLEXIBLY DISORDERED. REMARK 4 REMARK 4 1GQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1290009011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 59.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1F1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES, PH 5.6, 10 MM MAGNESIUM REMARK 280 CHLORIDE, 100 MM AMMONIUM SULFATE, 20% (W/V) PEG 8000, PH 5.60, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.00667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.00667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.01333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 178 O REMARK 470 ARG B 179 N CA CB CG CD NE CZ REMARK 470 ARG B 179 NH1 NH2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 140 REMARK 475 ILE A 141 REMARK 475 LYS A 142 REMARK 475 THR A 143 REMARK 475 THR A 144 REMARK 475 ARG A 145 REMARK 475 ASP A 146 REMARK 475 ARG A 147 REMARK 475 VAL A 148 REMARK 475 THR A 288 REMARK 475 GLU A 289 REMARK 475 LEU A 290 REMARK 475 ASP A 291 REMARK 475 ASP A 292 REMARK 475 GLY A 293 REMARK 475 ILE A 294 REMARK 475 GLN A 295 REMARK 475 ALA A 296 REMARK 475 ASP A 297 REMARK 475 SER A 298 REMARK 475 GLY A 299 REMARK 475 PRO A 300 REMARK 475 ILE A 301 REMARK 475 ASN A 311 REMARK 475 ASP A 312 REMARK 475 THR A 313 REMARK 475 ASP A 314 REMARK 475 ALA A 315 REMARK 475 ASN A 316 REMARK 475 PRO A 317 REMARK 475 ARG A 318 REMARK 475 TYR A 319 REMARK 475 GLY A 336 REMARK 475 TYR A 337 REMARK 475 TYR A 338 REMARK 475 SER A 339 REMARK 475 TRP A 340 REMARK 475 ARG A 341 REMARK 475 SER A 342 REMARK 475 PRO A 343 REMARK 475 GLN A 381B REMARK 475 SER A 381C REMARK 475 ASP A 381D REMARK 475 ASP A 381E REMARK 475 PRO A 381F REMARK 475 LEU A 402A REMARK 475 GLU A 402B REMARK 475 HIS A 402C REMARK 475 HIS A 402D REMARK 475 HIS A 402E REMARK 475 HIS A 402F REMARK 475 HIS A 402G REMARK 475 HIS A 402H REMARK 475 SER B 140 REMARK 475 ILE B 141 REMARK 475 LYS B 142 REMARK 475 THR B 143 REMARK 475 THR B 144 REMARK 475 ARG B 145 REMARK 475 ASP B 146 REMARK 475 ARG B 147 REMARK 475 VAL B 148 REMARK 475 GLU B 289 REMARK 475 LEU B 290 REMARK 475 ASP B 291 REMARK 475 ASP B 292 REMARK 475 GLY B 293 REMARK 475 ILE B 294 REMARK 475 GLN B 295 REMARK 475 ALA B 296 REMARK 475 ASP B 297 REMARK 475 SER B 298 REMARK 475 GLY B 299 REMARK 475 PRO B 300 REMARK 475 ILE B 301 REMARK 475 ASN B 311 REMARK 475 ASP B 312 REMARK 475 THR B 313 REMARK 475 ASP B 314 REMARK 475 TRP B 340 REMARK 475 ARG B 341 REMARK 475 SER B 342 REMARK 475 PRO B 343 REMARK 475 SER B 381A REMARK 475 GLN B 381B REMARK 475 SER B 381C REMARK 475 ASP B 381D REMARK 475 ASP B 381E REMARK 475 PRO B 381F REMARK 475 HIS B 381G REMARK 475 PHE B 381H REMARK 475 LEU B 402A REMARK 475 GLU B 402B REMARK 475 HIS B 402C REMARK 475 HIS B 402D REMARK 475 HIS B 402E REMARK 475 HIS B 402F REMARK 475 HIS B 402G REMARK 475 HIS B 402H REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 175 CB CG CD CE NZ REMARK 480 LYS A 184 CD CE NZ REMARK 480 LYS A 191 CG CD CE NZ REMARK 480 LYS A 217 CE NZ REMARK 480 GLU A 239 CG CD OE1 OE2 REMARK 480 GLU A 240 CG CD OE1 OE2 REMARK 480 LYS A 246 CB CG CD CE NZ REMARK 480 LYS A 259 CG CD CE NZ REMARK 480 HIS A 264 CB CG ND1 CD2 CE1 NE2 REMARK 480 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 480 ASP A 268 CB CG OD1 OD2 REMARK 480 LYS A 271 CG CD CE NZ REMARK 480 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 320 CB CG CD CE NZ REMARK 480 TYR A 331 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG A 345 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 358 CG CD OE1 OE2 REMARK 480 GLU A 359 CD OE1 OE2 REMARK 480 LYS A 362 CG CD CE NZ REMARK 480 ARG A 379 NE CZ NH1 NH2 REMARK 480 GLU A 381 CG CD OE1 OE2 REMARK 480 SER A 381A CB OG REMARK 480 HIS A 381G CB CG ND1 CD2 CE1 NE2 REMARK 480 PHE A 381H CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 HIS A 381I CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU A 382 CB CG CD OE1 OE2 REMARK 480 LYS A 383 CG CD CE NZ REMARK 480 LYS A 384 CG CD CE NZ REMARK 480 GLN B 152 CD OE1 NE2 REMARK 480 GLU B 161 CG CD OE1 OE2 REMARK 480 LYS B 162 CE NZ REMARK 480 LYS B 164 CE NZ REMARK 480 LYS B 175 CD CE NZ REMARK 480 LYS B 184 CG CD CE NZ REMARK 480 GLU B 187 OE1 OE2 REMARK 480 LYS B 216 NZ REMARK 480 LYS B 217 NZ REMARK 480 GLU B 240 CD OE1 OE2 REMARK 480 ARG B 269 CD NE CZ NH1 NH2 REMARK 480 LYS B 271 CG CD CE NZ REMARK 480 THR B 288 CB OG1 CG2 REMARK 480 TYR B 331 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 TYR B 338 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR B 338 OH REMARK 480 SER B 339 CB OG REMARK 480 GLN B 351 CG CD OE1 NE2 REMARK 480 GLU B 358 CG CD OE1 OE2 REMARK 480 GLU B 359 CD OE1 OE2 REMARK 480 LYS B 362 CG CD CE NZ REMARK 480 GLU B 381 CB CG CD OE1 OE2 REMARK 480 HIS B 381I CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 383 CG CD CE NZ REMARK 480 LYS B 384 CG CD CE NZ REMARK 480 GLN B 402 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 206 CB CYS B 206 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 149 C - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG A 269 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 142 84.81 56.05 REMARK 500 ARG A 145 82.93 -162.55 REMARK 500 ASN A 156 84.15 -66.18 REMARK 500 VAL A 175A -3.99 -54.66 REMARK 500 ASP A 185 -70.45 -50.49 REMARK 500 ASP A 205 48.21 39.48 REMARK 500 ASN A 226 42.11 -104.77 REMARK 500 CYS A 229 -176.42 -171.28 REMARK 500 GLU A 239 -138.39 -123.45 REMARK 500 ASP A 247 -80.40 -85.58 REMARK 500 CYS A 270 72.96 57.94 REMARK 500 GLU A 275 -10.88 65.90 REMARK 500 GLU A 289 -168.31 57.54 REMARK 500 ASP A 292 -97.79 56.55 REMARK 500 ASP A 312 103.74 -164.46 REMARK 500 ALA A 315 86.60 56.02 REMARK 500 ASN A 316 66.58 -160.28 REMARK 500 LYS A 320 -36.39 -135.58 REMARK 500 ILE A 321 59.40 33.41 REMARK 500 PRO A 322 141.23 -35.92 REMARK 500 PRO A 335 -159.56 -75.92 REMARK 500 TYR A 337 25.80 -162.92 REMARK 500 TRP A 340 -71.38 -65.67 REMARK 500 GLU A 359 -19.44 -169.90 REMARK 500 ASP A 381D 154.72 64.13 REMARK 500 ASP A 381E 119.92 63.10 REMARK 500 HIS A 381G 37.05 35.87 REMARK 500 PHE A 400 37.31 -80.89 REMARK 500 GLN A 402 -70.32 -130.23 REMARK 500 GLU A 402B -162.68 58.57 REMARK 500 ILE B 141 -28.72 -159.02 REMARK 500 THR B 144 -25.84 -153.11 REMARK 500 ARG B 145 91.54 57.34 REMARK 500 THR B 150 41.98 -80.88 REMARK 500 ASP B 205 56.51 39.43 REMARK 500 SER B 236 -169.62 -167.53 REMARK 500 GLU B 240 -118.16 38.61 REMARK 500 ASP B 268 28.68 -63.86 REMARK 500 ARG B 269 -13.91 -146.15 REMARK 500 ASP B 292 113.00 -160.33 REMARK 500 PRO B 317 88.51 -52.70 REMARK 500 ARG B 318 -45.80 -155.13 REMARK 500 VAL B 323 87.23 -26.71 REMARK 500 PRO B 335 -149.85 -65.55 REMARK 500 TYR B 337 -154.94 54.95 REMARK 500 TYR B 338 39.15 38.06 REMARK 500 SER B 339 44.28 -103.62 REMARK 500 ARG B 341 -32.67 -162.57 REMARK 500 ASP B 363 -3.70 -151.17 REMARK 500 PHE B 380 41.44 -142.19 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CASPASE-7 IN COMPLEX WITH ACETYL-ASP-GLU-VAL- REMARK 900 ASP-CHO REMARK 900 RELATED ID: 1I4O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE XIAP/CASPASE-7 COMPLEX DBREF 1GQF A 140 402 UNP P55210 CASP7_HUMAN 47 303 DBREF 1GQF B 140 402 UNP P55210 CASP7_HUMAN 47 303 SEQADV 1GQF ALA A 285 UNP P55210 CYS 186 ENGINEERED MUTATION SEQADV 1GQF LEU A 402A UNP P55210 EXPRESSION TAG SEQADV 1GQF GLU A 402B UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS A 402C UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS A 402D UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS A 402E UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS A 402F UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS A 402G UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS A 402H UNP P55210 EXPRESSION TAG SEQADV 1GQF ALA B 285 UNP P55210 CYS 186 ENGINEERED MUTATION SEQADV 1GQF LEU B 402A UNP P55210 EXPRESSION TAG SEQADV 1GQF GLU B 402B UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS B 402C UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS B 402D UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS B 402E UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS B 402F UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS B 402G UNP P55210 EXPRESSION TAG SEQADV 1GQF HIS B 402H UNP P55210 EXPRESSION TAG SEQRES 1 A 265 SER ILE LYS THR THR ARG ASP ARG VAL PRO THR TYR GLN SEQRES 2 A 265 TYR ASN MET ASN PHE GLU LYS LEU GLY LYS CYS ILE ILE SEQRES 3 A 265 ILE ASN ASN LYS ASN PHE ASP LYS VAL THR GLY MET GLY SEQRES 4 A 265 VAL ARG ASN GLY THR ASP LYS ASP ALA GLU ALA LEU PHE SEQRES 5 A 265 LYS CYS PHE ARG SER LEU GLY PHE ASP VAL ILE VAL TYR SEQRES 6 A 265 ASN ASP CYS SER CYS ALA LYS MET GLN ASP LEU LEU LYS SEQRES 7 A 265 LYS ALA SER GLU GLU ASP HIS THR ASN ALA ALA CYS PHE SEQRES 8 A 265 ALA CYS ILE LEU LEU SER HIS GLY GLU GLU ASN VAL ILE SEQRES 9 A 265 TYR GLY LYS ASP GLY VAL THR PRO ILE LYS ASP LEU THR SEQRES 10 A 265 ALA HIS PHE ARG GLY ASP ARG CYS LYS THR LEU LEU GLU SEQRES 11 A 265 LYS PRO LYS LEU PHE PHE ILE GLN ALA ALA ARG GLY THR SEQRES 12 A 265 GLU LEU ASP ASP GLY ILE GLN ALA ASP SER GLY PRO ILE SEQRES 13 A 265 ASN ASP THR ASP ALA ASN PRO ARG TYR LYS ILE PRO VAL SEQRES 14 A 265 GLU ALA ASP PHE LEU PHE ALA TYR SER THR VAL PRO GLY SEQRES 15 A 265 TYR TYR SER TRP ARG SER PRO GLY ARG GLY SER TRP PHE SEQRES 16 A 265 VAL GLN ALA LEU CYS SER ILE LEU GLU GLU HIS GLY LYS SEQRES 17 A 265 ASP LEU GLU ILE MET GLN ILE LEU THR ARG VAL ASN ASP SEQRES 18 A 265 ARG VAL ALA ARG HIS PHE GLU SER GLN SER ASP ASP PRO SEQRES 19 A 265 HIS PHE HIS GLU LYS LYS GLN ILE PRO CYS VAL VAL SER SEQRES 20 A 265 MET LEU THR LYS GLU LEU TYR PHE SER GLN LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 SER ILE LYS THR THR ARG ASP ARG VAL PRO THR TYR GLN SEQRES 2 B 265 TYR ASN MET ASN PHE GLU LYS LEU GLY LYS CYS ILE ILE SEQRES 3 B 265 ILE ASN ASN LYS ASN PHE ASP LYS VAL THR GLY MET GLY SEQRES 4 B 265 VAL ARG ASN GLY THR ASP LYS ASP ALA GLU ALA LEU PHE SEQRES 5 B 265 LYS CYS PHE ARG SER LEU GLY PHE ASP VAL ILE VAL TYR SEQRES 6 B 265 ASN ASP CYS SER CYS ALA LYS MET GLN ASP LEU LEU LYS SEQRES 7 B 265 LYS ALA SER GLU GLU ASP HIS THR ASN ALA ALA CYS PHE SEQRES 8 B 265 ALA CYS ILE LEU LEU SER HIS GLY GLU GLU ASN VAL ILE SEQRES 9 B 265 TYR GLY LYS ASP GLY VAL THR PRO ILE LYS ASP LEU THR SEQRES 10 B 265 ALA HIS PHE ARG GLY ASP ARG CYS LYS THR LEU LEU GLU SEQRES 11 B 265 LYS PRO LYS LEU PHE PHE ILE GLN ALA ALA ARG GLY THR SEQRES 12 B 265 GLU LEU ASP ASP GLY ILE GLN ALA ASP SER GLY PRO ILE SEQRES 13 B 265 ASN ASP THR ASP ALA ASN PRO ARG TYR LYS ILE PRO VAL SEQRES 14 B 265 GLU ALA ASP PHE LEU PHE ALA TYR SER THR VAL PRO GLY SEQRES 15 B 265 TYR TYR SER TRP ARG SER PRO GLY ARG GLY SER TRP PHE SEQRES 16 B 265 VAL GLN ALA LEU CYS SER ILE LEU GLU GLU HIS GLY LYS SEQRES 17 B 265 ASP LEU GLU ILE MET GLN ILE LEU THR ARG VAL ASN ASP SEQRES 18 B 265 ARG VAL ALA ARG HIS PHE GLU SER GLN SER ASP ASP PRO SEQRES 19 B 265 HIS PHE HIS GLU LYS LYS GLN ILE PRO CYS VAL VAL SER SEQRES 20 B 265 MET LEU THR LYS GLU LEU TYR PHE SER GLN LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS HET SO4 A1403 5 HET SO4 B1403 5 HET SO4 B1404 5 HET SO4 B1405 5 HET SO4 B1406 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *20(H2 O) HELIX 1 1 ASP A 174 GLY A 175C 5 5 HELIX 2 2 GLY A 181 GLY A 197 1 17 HELIX 3 3 SER A 207 GLU A 221 1 15 HELIX 4 4 ILE A 258 HIS A 264 1 7 HELIX 5 5 CYS A 270 LEU A 274 5 5 HELIX 6 6 SER A 347 GLY A 361 1 15 HELIX 7 7 GLU A 365 HIS A 379A 1 16 HELIX 8 8 ASP B 174 GLY B 175C 5 5 HELIX 9 9 GLY B 181 GLY B 197 1 17 HELIX 10 10 SER B 207 GLU B 221 1 15 HELIX 11 11 ILE B 258 HIS B 264 1 7 HELIX 12 12 PHE B 265 LEU B 274 5 10 HELIX 13 13 SER B 347 GLY B 361 1 15 HELIX 14 14 GLU B 365 ARG B 379 1 15 HELIX 15 15 HIS B 379A GLU B 381 5 3 SHEET 1 AA12 ASP A 199 ASN A 204 0 SHEET 2 AA12 LYS A 164 ASN A 169 1 O CYS A 165 N ILE A 201 SHEET 3 AA12 PHE A 230 HIS A 237 1 O ALA A 231 N ILE A 166 SHEET 4 AA12 LYS A 278 ALA A 285 1 O LEU A 279 N CYS A 232 SHEET 5 AA12 PHE A 327 SER A 332 1 O LEU A 328 N PHE A 280 SHEET 6 AA12 CYS A 388 SER A 392 -1 O CYS A 388 N TYR A 331 SHEET 7 AA12 CYS B 388 SER B 392 -1 O VAL B 389 N SER A 392 SHEET 8 AA12 PHE B 327 SER B 332 -1 O PHE B 329 N VAL B 390 SHEET 9 AA12 LYS B 278 GLN B 283 1 O LYS B 278 N LEU B 328 SHEET 10 AA12 PHE B 230 LEU B 235 1 O PHE B 230 N LEU B 279 SHEET 11 AA12 LYS B 164 ASN B 169 1 O LYS B 164 N ALA B 231 SHEET 12 AA12 ASP B 199 ASN B 204 1 O ASP B 199 N CYS B 165 SHEET 1 AB 2 VAL A 242 TYR A 244 0 SHEET 2 AB 2 VAL A 255 PRO A 257 -1 O THR A 256 N ILE A 243 SHEET 1 BA 3 GLY B 238 GLU B 239 0 SHEET 2 BA 3 VAL B 242 TYR B 244 -1 O VAL B 242 N GLU B 239 SHEET 3 BA 3 VAL B 255 PRO B 257 -1 O THR B 256 N ILE B 243 CISPEP 1 VAL A 148 PRO A 149 0 -1.59 CISPEP 2 VAL B 148 PRO B 149 0 -0.13 SITE 1 AC1 2 ARG A 179 PRO A 335 SITE 1 AC2 2 PRO B 335 GLY B 336 SITE 1 AC3 6 LYS B 171 GLY B 181 THR B 182 ASP B 183 SITE 2 AC3 6 LYS B 184 LYS B 191 SITE 1 AC4 2 ARG B 345 TRP B 348 SITE 1 AC5 4 LYS B 171 ASP B 183 LYS B 191 ARG B 194 CRYST1 90.210 90.210 183.020 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011085 0.006400 0.000000 0.00000 SCALE2 0.000000 0.012800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005464 0.00000