PDB Short entry for 1GTR HEADER COMPLEX (LIGASE/TRNA) 15-SEP-93 1GTR TITLE STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA TITLE 2 SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (74-MER); COMPND 3 CHAIN: B; COMPND 4 EC: 6.1.1.18; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GLUTAMINYL-TRNA SYNTHETASE; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 562 KEYWDS COMPLEX (LIGASE-TRNA), COMPLEX (LIGASE-TRNA) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ROULD,J.J.PERONA,T.A.STEITZ REVDAT 3 16-NOV-11 1GTR 1 VERSN HETATM REVDAT 2 24-FEB-09 1GTR 1 VERSN REVDAT 1 07-FEB-95 1GTR 0 JRNL AUTH M.A.ROULD,J.J.PERONA,T.A.STEITZ JRNL TITL STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY JRNL TITL 2 GLUTAMINYL-TRNA SYNTHETASE. JRNL REF NATURE V. 352 213 1991 JRNL REFN ISSN 0028-0836 JRNL PMID 1857417 JRNL DOI 10.1038/352213A0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4279 REMARK 3 NUCLEIC ACID ATOMS : 1573 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 3.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GTR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37820 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 121.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.15000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 121.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.90000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 121.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.15000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.90000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 121.40000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.15000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 573 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 720 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ASP A 445 REMARK 465 PRO A 446 REMARK 465 ALA A 447 REMARK 465 ASP A 448 REMARK 465 GLY A 449 REMARK 465 ARG A 450 REMARK 465 LYS A 451 REMARK 465 VAL A 452 REMARK 465 LYS A 453 REMARK 465 TRP A 548 REMARK 465 ALA A 549 REMARK 465 LYS A 550 REMARK 465 VAL A 551 REMARK 465 GLY A 552 REMARK 465 GLU A 553 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 24 NE2 HIS A 24 CD2 -0.071 REMARK 500 HIS A 28 NE2 HIS A 28 CD2 -0.071 REMARK 500 HIS A 40 NE2 HIS A 40 CD2 -0.070 REMARK 500 HIS A 43 NE2 HIS A 43 CD2 -0.069 REMARK 500 HIS A 107 NE2 HIS A 107 CD2 -0.068 REMARK 500 HIS A 198 NE2 HIS A 198 CD2 -0.076 REMARK 500 HIS A 215 NE2 HIS A 215 CD2 -0.071 REMARK 500 HIS A 226 NE2 HIS A 226 CD2 -0.071 REMARK 500 HIS A 252 NE2 HIS A 252 CD2 -0.078 REMARK 500 HIS A 281 NE2 HIS A 281 CD2 -0.071 REMARK 500 HIS A 368 NE2 HIS A 368 CD2 -0.072 REMARK 500 HIS A 457 NE2 HIS A 457 CD2 -0.072 REMARK 500 HIS A 463 NE2 HIS A 463 CD2 -0.067 REMARK 500 HIS A 530 NE2 HIS A 530 CD2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 5 O3' - P - OP2 ANGL. DEV. = 14.3 DEGREES REMARK 500 G B 5 O3' - P - OP1 ANGL. DEV. = -14.3 DEGREES REMARK 500 U B 8 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 U B 8 O3' - P - OP2 ANGL. DEV. = 28.3 DEGREES REMARK 500 U B 8 O3' - P - OP1 ANGL. DEV. = -25.6 DEGREES REMARK 500 C B 9 O3' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 C B 9 O3' - P - OP1 ANGL. DEV. = -17.0 DEGREES REMARK 500 C B 12 C4' - C3' - C2' ANGL. DEV. = -7.2 DEGREES REMARK 500 C B 12 O3' - P - OP2 ANGL. DEV. = 10.4 DEGREES REMARK 500 C B 12 O3' - P - OP1 ANGL. DEV. = -20.1 DEGREES REMARK 500 A B 13 O3' - P - O5' ANGL. DEV. = 13.2 DEGREES REMARK 500 A B 14 C1' - O4' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 A B 14 O3' - P - O5' ANGL. DEV. = 18.9 DEGREES REMARK 500 A B 14 O3' - P - OP1 ANGL. DEV. = -15.6 DEGREES REMARK 500 G B 15 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 C B 16 N1 - C2 - O2 ANGL. DEV. = 5.3 DEGREES REMARK 500 G B 15 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 C B 16 O3' - P - O5' ANGL. DEV. = -25.9 DEGREES REMARK 500 C B 16 O3' - P - OP2 ANGL. DEV. = -16.7 DEGREES REMARK 500 C B 16 O3' - P - OP1 ANGL. DEV. = 33.6 DEGREES REMARK 500 C B 16 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 G B 18 O3' - P - OP2 ANGL. DEV. = 24.1 DEGREES REMARK 500 G B 18 O3' - P - OP1 ANGL. DEV. = -27.0 DEGREES REMARK 500 U B 20 C3' - O3' - P ANGL. DEV. = 12.1 DEGREES REMARK 500 A B 21 O3' - P - O5' ANGL. DEV. = -21.3 DEGREES REMARK 500 A B 21 O3' - P - OP2 ANGL. DEV. = 37.2 DEGREES REMARK 500 A B 21 O3' - P - OP1 ANGL. DEV. = -22.0 DEGREES REMARK 500 A B 22 O3' - P - O5' ANGL. DEV. = 21.7 DEGREES REMARK 500 A B 22 O3' - P - OP1 ANGL. DEV. = -30.2 DEGREES REMARK 500 G B 23 O3' - P - OP2 ANGL. DEV. = 9.3 DEGREES REMARK 500 C B 25 O3' - P - OP1 ANGL. DEV. = -14.7 DEGREES REMARK 500 C B 28 O3' - P - OP2 ANGL. DEV. = 12.1 DEGREES REMARK 500 C B 28 O3' - P - OP1 ANGL. DEV. = -19.5 DEGREES REMARK 500 G B 29 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 G B 29 O3' - P - OP1 ANGL. DEV. = -18.1 DEGREES REMARK 500 G B 30 C1' - O4' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 G B 30 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 G B 30 O3' - P - O5' ANGL. DEV. = 18.2 DEGREES REMARK 500 G B 30 O3' - P - OP2 ANGL. DEV. = 11.9 DEGREES REMARK 500 G B 30 O3' - P - OP1 ANGL. DEV. = -30.1 DEGREES REMARK 500 U B 32 C5' - C4' - O4' ANGL. DEV. = 6.5 DEGREES REMARK 500 U B 32 N1 - C1' - C2' ANGL. DEV. = -7.4 DEGREES REMARK 500 U B 32 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 U B 32 O3' - P - O5' ANGL. DEV. = -36.6 DEGREES REMARK 500 U B 32 O3' - P - OP2 ANGL. DEV. = 45.2 DEGREES REMARK 500 U B 32 O3' - P - OP1 ANGL. DEV. = -23.6 DEGREES REMARK 500 U B 33 O3' - P - O5' ANGL. DEV. = 16.6 DEGREES REMARK 500 U B 33 O3' - P - OP2 ANGL. DEV. = 6.7 DEGREES REMARK 500 U B 33 O3' - P - OP1 ANGL. DEV. = -29.3 DEGREES REMARK 500 C B 34 O3' - P - O5' ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 140 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 32 74.28 -114.47 REMARK 500 THR A 135 -167.43 -127.08 REMARK 500 ILE A 176 -98.64 -111.42 REMARK 500 ASN A 397 -176.14 -68.80 REMARK 500 ALA A 414 -132.18 -133.16 REMARK 500 GLU A 420 -50.11 -130.65 REMARK 500 ASP A 425 -53.32 -122.73 REMARK 500 ALA A 426 -40.74 173.13 REMARK 500 THR A 441 46.74 -165.86 REMARK 500 GLU A 521 -55.56 -121.80 REMARK 500 ARG A 529 -38.98 -170.46 REMARK 500 THR A 532 -157.46 -118.72 REMARK 500 LYS A 535 107.18 -168.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 999 DBREF 1GTR A 1 553 UNP P00962 SYQ_ECOLI 1 553 DBREF 1GTR B 2 76 PDB 1GTR 1GTR 2 76 SEQRES 1 B 74 G G G G U A U C G C C A A SEQRES 2 B 74 G C G G U A A G G C A C C SEQRES 3 B 74 G G A U U C U G A U U C C SEQRES 4 B 74 G G C A U U C C G A G G U SEQRES 5 B 74 U C G A A U C C U C G U A SEQRES 6 B 74 C C C C A G C C A SEQRES 1 A 553 SER GLU ALA GLU ALA ARG PRO THR ASN PHE ILE ARG GLN SEQRES 2 A 553 ILE ILE ASP GLU ASP LEU ALA SER GLY LYS HIS THR THR SEQRES 3 A 553 VAL HIS THR ARG PHE PRO PRO GLU PRO ASN GLY TYR LEU SEQRES 4 A 553 HIS ILE GLY HIS ALA LYS SER ILE CYS LEU ASN PHE GLY SEQRES 5 A 553 ILE ALA GLN ASP TYR LYS GLY GLN CYS ASN LEU ARG PHE SEQRES 6 A 553 ASP ASP THR ASN PRO VAL LYS GLU ASP ILE GLU TYR VAL SEQRES 7 A 553 GLU SER ILE LYS ASN ASP VAL GLU TRP LEU GLY PHE HIS SEQRES 8 A 553 TRP SER GLY ASN VAL ARG TYR SER SER ASP TYR PHE ASP SEQRES 9 A 553 GLN LEU HIS ALA TYR ALA ILE GLU LEU ILE ASN LYS GLY SEQRES 10 A 553 LEU ALA TYR VAL ASP GLU LEU THR PRO GLU GLN ILE ARG SEQRES 11 A 553 GLU TYR ARG GLY THR LEU THR GLN PRO GLY LYS ASN SER SEQRES 12 A 553 PRO TYR ARG ASP ARG SER VAL GLU GLU ASN LEU ALA LEU SEQRES 13 A 553 PHE GLU LYS MET ARG ALA GLY GLY PHE GLU GLU GLY LYS SEQRES 14 A 553 ALA CYS LEU ARG ALA LYS ILE ASP MET ALA SER PRO PHE SEQRES 15 A 553 ILE VAL MET ARG ASP PRO VAL LEU TYR ARG ILE LYS PHE SEQRES 16 A 553 ALA GLU HIS HIS GLN THR GLY ASN LYS TRP CYS ILE TYR SEQRES 17 A 553 PRO MET TYR ASP PHE THR HIS CYS ILE SER ASP ALA LEU SEQRES 18 A 553 GLU GLY ILE THR HIS SER LEU CYS THR LEU GLU PHE GLN SEQRES 19 A 553 ASP ASN ARG ARG LEU TYR ASP TRP VAL LEU ASP ASN ILE SEQRES 20 A 553 THR ILE PRO VAL HIS PRO ARG GLN TYR GLU PHE SER ARG SEQRES 21 A 553 LEU ASN LEU GLU TYR THR VAL MET SER LYS ARG LYS LEU SEQRES 22 A 553 ASN LEU LEU VAL THR ASP LYS HIS VAL GLU GLY TRP ASP SEQRES 23 A 553 ASP PRO ARG MET PRO THR ILE SER GLY LEU ARG ARG ARG SEQRES 24 A 553 GLY TYR THR ALA ALA SER ILE ARG GLU PHE CYS LYS ARG SEQRES 25 A 553 ILE GLY VAL THR LYS GLN ASP ASN THR ILE GLU MET ALA SEQRES 26 A 553 SER LEU GLU SER CYS ILE ARG GLU ASP LEU ASN GLU ASN SEQRES 27 A 553 ALA PRO ARG ALA MET ALA VAL ILE ASP PRO VAL LYS LEU SEQRES 28 A 553 VAL ILE GLU ASN TYR GLN GLY GLU GLY GLU MET VAL THR SEQRES 29 A 553 MET PRO ASN HIS PRO ASN LYS PRO GLU MET GLY SER ARG SEQRES 30 A 553 GLN VAL PRO PHE SER GLY GLU ILE TRP ILE ASP ARG ALA SEQRES 31 A 553 ASP PHE ARG GLU GLU ALA ASN LYS GLN TYR LYS ARG LEU SEQRES 32 A 553 VAL LEU GLY LYS GLU VAL ARG LEU ARG ASN ALA TYR VAL SEQRES 33 A 553 ILE LYS ALA GLU ARG VAL GLU LYS ASP ALA GLU GLY ASN SEQRES 34 A 553 ILE THR THR ILE PHE CYS THR TYR ASP ALA ASP THR LEU SEQRES 35 A 553 SER LYS ASP PRO ALA ASP GLY ARG LYS VAL LYS GLY VAL SEQRES 36 A 553 ILE HIS TRP VAL SER ALA ALA HIS ALA LEU PRO VAL GLU SEQRES 37 A 553 ILE ARG LEU TYR ASP ARG LEU PHE SER VAL PRO ASN PRO SEQRES 38 A 553 GLY ALA ALA ASP ASP PHE LEU SER VAL ILE ASN PRO GLU SEQRES 39 A 553 SER LEU VAL ILE LYS GLN GLY PHE ALA GLU PRO SER LEU SEQRES 40 A 553 LYS ASP ALA VAL ALA GLY LYS ALA PHE GLN PHE GLU ARG SEQRES 41 A 553 GLU GLY TYR PHE CYS LEU ASP SER ARG HIS SER THR ALA SEQRES 42 A 553 GLU LYS PRO VAL PHE ASN ARG THR VAL GLY LEU ARG ASP SEQRES 43 A 553 THR TRP ALA LYS VAL GLY GLU HET ATP A 999 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 HOH *231(H2 O) HELIX 1 1 PHE A 10 SER A 21 1 12 HELIX 2 2 ILE A 41 ASP A 56 1 16 HELIX 3 3 PRO A 70 LYS A 72 5 3 HELIX 4 4 ILE A 75 TRP A 87 1 13 HELIX 5 5 SER A 99 ASN A 115 5 17 HELIX 6 6 PRO A 126 ARG A 133 1 8 HELIX 7 7 VAL A 150 ALA A 162 1 13 HELIX 8 8 ILE A 183 MET A 185 5 3 HELIX 9 9 TYR A 211 GLU A 222 1 12 HELIX 10 10 LEU A 231 PHE A 233 5 3 HELIX 11 11 ASN A 236 ASN A 246 5 11 HELIX 12 12 LYS A 270 THR A 278 1 9 HELIX 13 13 ILE A 293 ARG A 299 1 7 HELIX 14 14 ALA A 303 ILE A 313 1 11 HELIX 15 15 MET A 324 ASN A 338 1 15 HELIX 16 16 PRO A 372 MET A 374 5 3 HELIX 17 17 ARG A 389 ASP A 391 5 3 HELIX 18 18 PRO A 481 ALA A 483 5 3 HELIX 19 19 LEU A 488 VAL A 490 5 3 HELIX 20 20 PRO A 505 ASP A 509 5 5 SHEET 1 A 2 HIS A 28 PHE A 31 0 SHEET 2 A 2 GLN A 60 LEU A 63 1 N GLN A 60 O THR A 29 SHEET 1 B 4 ALA A 119 ASP A 122 0 SHEET 2 B 4 CYS A 171 ALA A 174 -1 N ARG A 173 O TYR A 120 SHEET 3 B 4 VAL A 189 ILE A 193 -1 N TYR A 191 O LEU A 172 SHEET 4 B 4 ILE A 207 PRO A 209 -1 N TYR A 208 O ARG A 192 SHEET 1 C 2 HIS A 226 THR A 230 0 SHEET 2 C 2 ARG A 254 PHE A 258 1 N ARG A 254 O SER A 227 SHEET 1 D 6 PRO A 340 ALA A 342 0 SHEET 2 D 6 ALA A 515 PHE A 518 1 N GLN A 517 O PRO A 340 SHEET 3 D 6 GLY A 522 LEU A 526 -1 N PHE A 524 O PHE A 516 SHEET 4 D 6 PRO A 536 GLY A 543 -1 N VAL A 542 O TYR A 523 SHEET 5 D 6 LEU A 465 TYR A 472 1 N GLU A 468 O PRO A 536 SHEET 6 D 6 LEU A 496 ALA A 503 -1 N ALA A 503 O LEU A 465 SHEET 1 E 4 GLU A 384 ASP A 388 0 SHEET 2 E 4 PRO A 348 ILE A 353 -1 N LEU A 351 O ILE A 385 SHEET 3 E 4 THR A 432 CYS A 435 1 N ILE A 433 O LYS A 350 SHEET 4 E 4 ALA A 419 GLU A 423 -1 N GLU A 423 O THR A 432 SHEET 1 F 2 GLU A 361 PRO A 366 0 SHEET 2 F 2 SER A 376 PHE A 381 -1 N PHE A 381 O GLU A 361 SHEET 1 G 2 GLU A 408 ARG A 410 0 SHEET 2 G 2 VAL A 416 LYS A 418 -1 N ILE A 417 O VAL A 409 SITE 1 AC1 16 PHE A 31 PRO A 33 GLU A 34 ASN A 36 SITE 2 AC1 16 GLY A 42 HIS A 43 THR A 230 ARG A 260 SITE 3 AC1 16 LEU A 261 LYS A 270 HOH A 602 HOH A 619 SITE 4 AC1 16 HOH A 628 HOH A 784 A B 76 HOH B 792 CRYST1 242.800 94.300 115.800 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008636 0.00000