PDB Short entry for 1H0Z HEADER SERINE PROTEINASE INHIBITOR 01-JUL-02 1H0Z TITLE LEKTI DOMAIN SIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE INHIBITOR KAZAL-TYPE 5, CONTAINS COMPND 3 HEMOFILTRATE PEPTIDE HF6478, HEMOFILTRATE PEPTIDE HF7665; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: LEKTI DOMAIN SIX (HF7665), RESIDUES 356-423; COMPND 6 SYNONYM: HF7665, LYMPHO-EPITHELIAL KAZAL-TYPE RELATED INHIBITOR, COMPND 7 LEKTI; COMPND 8 OTHER_DETAILS: DISULFIDE LINKAGE BETWEEN CYS A12 AND CYS A48, AND COMPND 9 BETWEEN CYS A26 AND CYS A45 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BLOOD; SOURCE 6 CELL: LYMPHO EPITHELIAL CELLS KEYWDS SERINE PROTEINASE INHIBITOR EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR T.LAUBER,P.ROESCH,U.C.MARX REVDAT 4 14-JUN-23 1H0Z 1 SHEET REVDAT 3 15-JAN-20 1H0Z 1 REMARK REVDAT 2 24-FEB-09 1H0Z 1 VERSN REVDAT 1 26-JUN-03 1H0Z 0 JRNL AUTH T.LAUBER,A.SCHULZ,K.SCHWEIMER,K.ADERMANN,U.C.MARX JRNL TITL HOMOLOGOUS PROTEINS WITH DIFFERENT FOLDS: THE JRNL TITL 2 THREE-DIMENSIONAL STRUCTURES OF DOMAINS 1 AND 6 OF THE JRNL TITL 3 MULTIPLE KAZAL-TYPE INHIBITOR LEKTI JRNL REF J.MOL.BIOL. V. 328 205 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12684009 JRNL DOI 10.1016/S0022-2836(03)00245-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H0Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1290011052. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; DQF-COSY; CLEAN-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST ENERGY AND LEAST RESTRAINT REMARK 210 VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD 2D NMR REMARK 210 EXPERIMENTS ON A NATIVE PROTEIN SAMPLE ISOLATED FROM HUMAN BLOOD REMARK 210 FILTRATE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 12 H TYR A 15 1.57 REMARK 500 O SER A 7 H LEU A 11 1.60 REMARK 500 O ASN A 13 H ARG A 16 1.60 REMARK 500 O GLU A 57 H LYS A 60 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 6 169.86 54.57 REMARK 500 1 ARG A 20 -89.14 -82.20 REMARK 500 1 ASN A 21 44.15 -102.54 REMARK 500 1 THR A 27 -170.26 -58.45 REMARK 500 1 ARG A 28 63.24 -103.76 REMARK 500 1 ASN A 30 63.10 -102.73 REMARK 500 1 ASP A 31 83.31 -152.41 REMARK 500 1 ASN A 43 -167.62 -127.55 REMARK 500 2 ASN A 21 49.22 -140.08 REMARK 500 2 GLU A 29 -170.37 47.31 REMARK 500 2 ASN A 30 58.35 -146.72 REMARK 500 2 ASP A 31 83.25 -165.38 REMARK 500 3 THR A 6 -169.43 -60.84 REMARK 500 3 ARG A 20 -90.93 -102.40 REMARK 500 3 ASN A 21 58.12 -116.06 REMARK 500 3 ARG A 28 47.56 -84.08 REMARK 500 3 ASN A 30 55.54 -94.94 REMARK 500 4 ARG A 20 -90.77 -104.19 REMARK 500 4 ASN A 21 54.28 -119.87 REMARK 500 4 ASN A 30 60.97 -104.81 REMARK 500 4 ASN A 43 -167.89 -129.95 REMARK 500 5 ARG A 20 -81.97 -87.70 REMARK 500 5 THR A 27 -167.19 -100.24 REMARK 500 5 ASN A 30 60.20 -155.45 REMARK 500 5 ASP A 31 89.76 66.23 REMARK 500 6 THR A 6 -164.57 -71.81 REMARK 500 6 ARG A 20 -90.18 -89.88 REMARK 500 6 ARG A 28 47.03 -95.81 REMARK 500 6 GLU A 29 155.65 -48.74 REMARK 500 6 ASN A 30 58.45 -95.18 REMARK 500 7 THR A 6 -164.21 -108.65 REMARK 500 7 ASN A 21 31.11 -159.58 REMARK 500 7 LYS A 23 65.18 -100.76 REMARK 500 7 ASN A 30 58.16 -97.82 REMARK 500 8 ARG A 20 -90.08 -82.50 REMARK 500 8 ASN A 21 55.85 -116.69 REMARK 500 8 ASN A 30 59.02 -100.05 REMARK 500 8 GLU A 63 96.51 47.15 REMARK 500 9 ARG A 20 -92.02 -80.49 REMARK 500 9 ASN A 21 57.49 -119.15 REMARK 500 9 ASN A 30 61.14 -106.42 REMARK 500 10 ARG A 20 -86.82 -126.70 REMARK 500 10 ASN A 21 32.45 -98.58 REMARK 500 10 THR A 27 -167.59 -100.25 REMARK 500 10 ASN A 30 85.83 -157.28 REMARK 500 10 ASP A 31 95.92 61.35 REMARK 500 11 ARG A 20 -98.44 -110.90 REMARK 500 11 ASN A 21 51.15 -105.46 REMARK 500 11 GLU A 29 148.89 59.02 REMARK 500 11 ASN A 30 55.40 -106.40 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.20 SIDE CHAIN REMARK 500 1 ARG A 20 0.31 SIDE CHAIN REMARK 500 1 ARG A 28 0.27 SIDE CHAIN REMARK 500 1 ARG A 67 0.30 SIDE CHAIN REMARK 500 2 ARG A 16 0.12 SIDE CHAIN REMARK 500 2 ARG A 20 0.23 SIDE CHAIN REMARK 500 2 ARG A 28 0.30 SIDE CHAIN REMARK 500 2 ARG A 67 0.26 SIDE CHAIN REMARK 500 3 ARG A 16 0.31 SIDE CHAIN REMARK 500 3 ARG A 20 0.31 SIDE CHAIN REMARK 500 3 ARG A 28 0.31 SIDE CHAIN REMARK 500 3 ARG A 67 0.08 SIDE CHAIN REMARK 500 4 ARG A 16 0.29 SIDE CHAIN REMARK 500 4 ARG A 20 0.30 SIDE CHAIN REMARK 500 4 ARG A 28 0.22 SIDE CHAIN REMARK 500 4 ARG A 67 0.29 SIDE CHAIN REMARK 500 5 ARG A 16 0.28 SIDE CHAIN REMARK 500 5 ARG A 20 0.17 SIDE CHAIN REMARK 500 5 ARG A 28 0.30 SIDE CHAIN REMARK 500 5 ARG A 67 0.25 SIDE CHAIN REMARK 500 6 ARG A 16 0.27 SIDE CHAIN REMARK 500 6 ARG A 20 0.30 SIDE CHAIN REMARK 500 6 ARG A 28 0.32 SIDE CHAIN REMARK 500 6 ARG A 67 0.20 SIDE CHAIN REMARK 500 7 ARG A 16 0.27 SIDE CHAIN REMARK 500 7 ARG A 20 0.25 SIDE CHAIN REMARK 500 7 ARG A 28 0.27 SIDE CHAIN REMARK 500 7 ARG A 67 0.20 SIDE CHAIN REMARK 500 8 ARG A 16 0.15 SIDE CHAIN REMARK 500 8 ARG A 20 0.18 SIDE CHAIN REMARK 500 8 ARG A 28 0.32 SIDE CHAIN REMARK 500 8 ARG A 67 0.29 SIDE CHAIN REMARK 500 9 ARG A 16 0.32 SIDE CHAIN REMARK 500 9 ARG A 20 0.28 SIDE CHAIN REMARK 500 9 ARG A 28 0.21 SIDE CHAIN REMARK 500 9 ARG A 67 0.29 SIDE CHAIN REMARK 500 10 ARG A 16 0.20 SIDE CHAIN REMARK 500 10 ARG A 20 0.24 SIDE CHAIN REMARK 500 10 ARG A 28 0.26 SIDE CHAIN REMARK 500 11 ARG A 16 0.32 SIDE CHAIN REMARK 500 11 ARG A 20 0.20 SIDE CHAIN REMARK 500 11 ARG A 28 0.28 SIDE CHAIN REMARK 500 11 ARG A 67 0.27 SIDE CHAIN REMARK 500 12 ARG A 16 0.23 SIDE CHAIN REMARK 500 12 ARG A 20 0.32 SIDE CHAIN REMARK 500 12 ARG A 28 0.29 SIDE CHAIN REMARK 500 12 ARG A 67 0.31 SIDE CHAIN REMARK 500 13 ARG A 16 0.19 SIDE CHAIN REMARK 500 13 ARG A 20 0.31 SIDE CHAIN REMARK 500 13 ARG A 28 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 83 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5551 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN USED IN THE NMR STUDY DIFFERS REMARK 999 FROM THAT OF THE MATCHING SWISS-PROT ENTRY AT POSITION REMARK 999 420. RESIDUE 420 IS A GLU, NOT LYS AS IN THE SWISS-PROT REMARK 999 ENTRY DBREF 1H0Z A 1 68 UNP Q9NQ38 ISK5_HUMAN 356 423 SEQADV 1H0Z GLU A 65 UNP Q9NQ38 LYS 420 CONFLICT SEQRES 1 A 68 GLU SER GLY LYS ALA THR SER TYR ALA GLU LEU CYS ASN SEQRES 2 A 68 GLU TYR ARG LYS LEU VAL ARG ASN GLY LYS LEU ALA CYS SEQRES 3 A 68 THR ARG GLU ASN ASP PRO ILE GLN GLY PRO ASP GLY LYS SEQRES 4 A 68 VAL HIS GLY ASN THR CYS SER MET CYS GLU VAL PHE PHE SEQRES 5 A 68 GLN ALA GLU GLU GLU GLU LYS LYS LYS LYS GLU GLY GLU SEQRES 6 A 68 SER ARG ASN HELIX 1 1 SER A 7 CYS A 12 1 6 HELIX 2 2 ASN A 13 ARG A 16 5 4 HELIX 3 3 ASN A 43 LYS A 62 1 20 SHEET 1 AA 2 ILE A 33 GLN A 34 0 SHEET 2 AA 2 VAL A 40 HIS A 41 -1 N HIS A 41 O ILE A 33 SSBOND 1 CYS A 12 CYS A 48 1555 1555 2.02 SSBOND 2 CYS A 26 CYS A 45 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000