PDB Short entry for 1H6E HEADER ENDOCYTOSIS/EXOCYTOSIS 12-JUN-01 1H6E TITLE MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED TITLE 2 WITH CTLA-4 INTERNALIZATION PEPTIDE TTGVYVKMPPT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN COAT ASSEMBLY PROTEIN AP50; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INTERNALIZATION SIGNAL BINDING DOMAIN; COMPND 5 SYNONYM: CLATHRIN COAT ASSOCIATED PROTEIN AP50, PLASMA MEMBRANE COMPND 6 ADAPTOR AP-2 50 KDA PROTEIN, HA2 50 KDA SUBUNIT, CLATHRIN ASSEMBLY COMPND 7 PROTEIN COMPLEX 2 MEDIUM CHAIN, AP-2 MU 2 CHAIN, AP50; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE FIRST 16 RESIDUES OF THE POLYMER MAKE UP A 6HIS- COMPND 10 CMYC-TAG (HHHHHHEQKLISEEDL); COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: CYTOTOXIC T-LYMPHOCYTE PROTEIN 4; COMPND 13 CHAIN: P; COMPND 14 SYNONYM: CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED ANTIGEN 4, CTLA-4, CD152 COMPND 15 ANTIGEN; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: 11-MER INTERNALISATION SIGNAL MOTIF FROM CTLA-4 (HOMO COMPND 18 SAPIENS), TTGVYVKMPPT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS/EXOCYTOSIS, ENDOCYTOSIS, ADAPTOR, PEPTIDE COMPLEX, KEYWDS 2 PHOSPHORYLATION, ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ROWSELL,R.A.PAUPTIT REVDAT 5 13-DEC-23 1H6E 1 REMARK REVDAT 4 29-MAY-19 1H6E 1 REMARK ATOM REVDAT 3 21-DEC-16 1H6E 1 SOURCE REMARK VERSN REVDAT 2 24-FEB-09 1H6E 1 VERSN REVDAT 1 28-NOV-01 1H6E 0 JRNL AUTH E.R.FOLLOWS,J.C.MCPHEAT,C.MINSHULL,N.C.MOORE,R.A.PAUPTIT, JRNL AUTH 2 S.ROWSELL,C.L.STACEY,J.J.STANWAY,I.W.TAYLOR,W.M.ABBOTT JRNL TITL STUDY OF THE INTERACTION OF THE MEDIUM CHAIN MU2 SUBUNIT OF JRNL TITL 2 THE CLATHRIN-ASSOCIATED ADAPTER PROTEIN COMPLEX 2 WITH JRNL TITL 3 CYTOTOXIC T-LYMPHOCYTE ANTIGEN 4 AND CD28 JRNL REF BIOCHEM.J. V. 359 427 2001 JRNL REFN ISSN 0264-6021 JRNL PMID 11583591 JRNL DOI 10.1042/0264-6021:3590427 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.J.OWEN,P.R.EVANS REMARK 1 TITL A STRUCTURAL EXPLANATION FOR THE RECOGNITION OF REMARK 1 TITL 2 TYROSINE-BASED ENDOCYTOTIC SIGNALS REMARK 1 REF SCIENCE V. 282 1327 1998 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 9812899 REMARK 1 DOI 10.1126/SCIENCE.282.5392.1327 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.4 REMARK 3 NUMBER OF REFLECTIONS : 5400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 11.200 REMARK 3 FREE R VALUE TEST SET COUNT : 603 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 619 REMARK 3 BIN R VALUE (WORKING SET) : 0.6260 REMARK 3 BIN FREE R VALUE : 0.5660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 72 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.067 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 1.44 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.14 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1290008179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : YES REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6681 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1BXX REMARK 200 REMARK 200 REMARK: ISOMORPHOUS TO 1BXX REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS CONTAINING A 1:1 MIXTURE REMARK 280 OF COMPLEX SOLUTION 6MG/ML PROTEIN AND 1MM 11MER PEPTIDE REMARK 280 SOLUTION IN 20MM HEPES PH7.5, 1MM DTT AND RESERVOIR BUFFER 1.4- REMARK 280 2.4M SODIUM CHLORIDE, 0.1M MES PH6.2-7.0, 0.4M NA/K PHOSPHATE, REMARK 280 15% GLYCEROL, PH 7.00, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.72033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.44067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.72033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.44067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 GLU A 154 REMARK 465 GLN A 155 REMARK 465 LYS A 156 REMARK 465 LEU A 157 REMARK 465 ILE A 158 REMARK 465 SER A 159 REMARK 465 GLU A 160 REMARK 465 GLU A 161 REMARK 465 ASP A 162 REMARK 465 LEU A 163 REMARK 465 GLU A 164 REMARK 465 GLY A 165 REMARK 465 LYS A 219 REMARK 465 ILE A 220 REMARK 465 VAL A 221 REMARK 465 ILE A 222 REMARK 465 GLU A 223 REMARK 465 LYS A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 GLY A 228 REMARK 465 THR A 229 REMARK 465 ALA A 230 REMARK 465 ASP A 231 REMARK 465 GLU A 232 REMARK 465 THR A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 SER A 236 REMARK 465 GLY A 237 REMARK 465 LYS A 238 REMARK 465 GLN A 239 REMARK 465 SER A 240 REMARK 465 ILE A 241 REMARK 465 ALA A 242 REMARK 465 ILE A 243 REMARK 465 ASP A 244 REMARK 465 ASP A 245 REMARK 465 CYS A 246 REMARK 465 THR A 247 REMARK 465 PHE A 248 REMARK 465 HIS A 249 REMARK 465 GLN A 250 REMARK 465 CYS A 251 REMARK 465 VAL A 252 REMARK 465 ARG A 253 REMARK 465 LEU A 254 REMARK 465 SER A 255 REMARK 465 LYS A 256 REMARK 465 PHE A 257 REMARK 465 ASP A 258 REMARK 465 SER A 259 REMARK 465 GLU A 260 REMARK 465 ARG A 261 REMARK 465 ASN A 376 REMARK 465 ASP A 377 REMARK 465 LYS A 378 REMARK 465 LYS A 379 REMARK 465 LYS A 380 REMARK 465 TRP A 381 REMARK 465 ALA A 382 REMARK 465 ARG A 383 REMARK 465 THR P 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 416 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 267 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 167 118.82 -163.53 REMARK 500 LEU A 184 95.84 -163.01 REMARK 500 LEU A 192 -32.39 -37.28 REMARK 500 HIS A 195 171.03 176.61 REMARK 500 TYR A 205 79.22 -151.81 REMARK 500 MET A 216 -165.98 170.96 REMARK 500 ASN A 217 -135.46 -111.65 REMARK 500 PHE A 265 -178.78 -179.05 REMARK 500 PRO A 268 63.88 -66.03 REMARK 500 ASP A 269 101.84 -5.91 REMARK 500 GLU A 273 99.90 -64.96 REMARK 500 LEU A 274 -83.11 -47.81 REMARK 500 MET A 275 -158.98 -117.90 REMARK 500 ARG A 276 97.30 -172.10 REMARK 500 ARG A 278 70.68 -164.53 REMARK 500 VAL A 296 -121.74 -146.35 REMARK 500 ARG A 298 8.61 -159.02 REMARK 500 ASN A 310 59.41 -101.30 REMARK 500 LYS A 312 114.76 -27.91 REMARK 500 PRO A 313 -19.38 -46.80 REMARK 500 ASN A 329 34.01 -92.89 REMARK 500 MET A 338 -18.22 -46.92 REMARK 500 LYS A 341 109.67 -174.72 REMARK 500 ASN A 349 71.60 77.46 REMARK 500 ILE A 351 72.46 -103.84 REMARK 500 LYS A 356 -70.14 -58.24 REMARK 500 SER A 364 115.35 -166.42 REMARK 500 LEU A 372 -175.51 -59.19 REMARK 500 PHE A 390 149.85 178.33 REMARK 500 ASN A 412 3.72 -68.37 REMARK 500 HIS A 416 32.33 -71.40 REMARK 500 TYR A 431 69.03 -114.28 REMARK 500 THR P 198 -26.05 -146.91 REMARK 500 PRO P 205 60.63 -102.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BW8 RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), REMARK 900 COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM REMARK 900 RELATED ID: 1BXX RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), REMARK 900 COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN REMARK 900 RELATED ID: 1HES RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), REMARK 900 COMPLEXED WITH P-SELECTIN INTERNALIZATION PEPTIDE SHLGTYGVFTNAA REMARK 900 RELATED ID: 1I31 RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR,COMPLEXED WITH REMARK 900 EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 ARESOLUTION DBREF 1H6E A 148 163 PDB 1H6E 1H6E 148 163 DBREF 1H6E A 164 435 UNP P20172 A2M1_HUMAN 164 435 DBREF 1H6E P 197 207 UNP P16410 CTL4_HUMAN 197 207 SEQRES 1 A 288 HIS HIS HIS HIS HIS HIS GLU GLN LYS LEU ILE SER GLU SEQRES 2 A 288 GLU ASP LEU GLU GLY ILE LYS TYR ARG ARG ASN GLU LEU SEQRES 3 A 288 PHE LEU ASP VAL LEU GLU SER VAL ASN LEU LEU MET SER SEQRES 4 A 288 PRO GLN GLY GLN VAL LEU SER ALA HIS VAL SER GLY ARG SEQRES 5 A 288 VAL VAL MET LYS SER TYR LEU SER GLY MET PRO GLU CYS SEQRES 6 A 288 LYS PHE GLY MET ASN ASP LYS ILE VAL ILE GLU LYS GLN SEQRES 7 A 288 GLY LYS GLY THR ALA ASP GLU THR SER LYS SER GLY LYS SEQRES 8 A 288 GLN SER ILE ALA ILE ASP ASP CYS THR PHE HIS GLN CYS SEQRES 9 A 288 VAL ARG LEU SER LYS PHE ASP SER GLU ARG SER ILE SER SEQRES 10 A 288 PHE ILE PRO PRO ASP GLY GLU PHE GLU LEU MET ARG TYR SEQRES 11 A 288 ARG THR THR LYS ASP ILE ILE LEU PRO PHE ARG VAL ILE SEQRES 12 A 288 PRO LEU VAL ARG GLU VAL GLY ARG THR LYS LEU GLU VAL SEQRES 13 A 288 LYS VAL VAL ILE LYS SER ASN PHE LYS PRO SER LEU LEU SEQRES 14 A 288 ALA GLN LYS ILE GLU VAL ARG ILE PRO THR PRO LEU ASN SEQRES 15 A 288 THR SER GLY VAL GLN VAL ILE CYS MET LYS GLY LYS ALA SEQRES 16 A 288 LYS TYR LYS ALA SER GLU ASN ALA ILE VAL TRP LYS ILE SEQRES 17 A 288 LYS ARG MET ALA GLY MET LYS GLU SER GLN ILE SER ALA SEQRES 18 A 288 GLU ILE GLU LEU LEU PRO THR ASN ASP LYS LYS LYS TRP SEQRES 19 A 288 ALA ARG PRO PRO ILE SER MET ASN PHE GLU VAL PRO PHE SEQRES 20 A 288 ALA PRO SER GLY LEU LYS VAL ARG TYR LEU LYS VAL PHE SEQRES 21 A 288 GLU PRO LYS LEU ASN TYR SER ASP HIS ASP VAL ILE LYS SEQRES 22 A 288 TRP VAL ARG TYR ILE GLY ARG SER GLY ILE TYR GLU THR SEQRES 23 A 288 ARG CYS SEQRES 1 P 11 THR THR GLY VAL TYR VAL LYS MET PRO PRO THR HELIX 1 1 SER A 414 VAL A 418 5 5 SHEET 1 AA 3 SER A 193 VAL A 196 0 SHEET 2 AA 3 GLU A 172 MET A 185 -1 O ASN A 182 N HIS A 195 SHEET 3 AA 3 ILE A 419 THR A 433 1 O ILE A 419 N LEU A 173 SHEET 1 AB 4 SER A 193 VAL A 196 0 SHEET 2 AB 4 GLU A 172 MET A 185 -1 O ASN A 182 N HIS A 195 SHEET 3 AB 4 ARG A 199 TYR A 205 -1 O ARG A 199 N LEU A 178 SHEET 4 AB 4 GLU A 271 MET A 275 -1 O PHE A 272 N MET A 202 SHEET 1 AC 3 SER A 264 PHE A 265 0 SHEET 2 AC 3 CYS A 212 PHE A 214 -1 O CYS A 212 N PHE A 265 SHEET 3 AC 3 LEU A 404 LYS A 405 -1 O LYS A 405 N LYS A 213 SHEET 1 AD 4 ILE A 290 ARG A 294 0 SHEET 2 AD 4 LYS A 300 LYS A 308 -1 O GLU A 302 N ARG A 294 SHEET 3 AD 4 GLU A 363 GLU A 371 -1 O SER A 364 N ILE A 307 SHEET 4 AD 4 GLY A 332 ILE A 336 -1 O GLY A 332 N GLU A 371 CRYST1 126.779 126.779 74.161 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007888 0.004554 0.000000 0.00000 SCALE2 0.000000 0.009108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013484 0.00000