PDB Short entry for 1H6F HEADER TRANSCRIPTION FACTOR 13-JUN-01 1H6F TITLE HUMAN TBX3, A TRANSCRIPTION FACTOR RESPONSIBLE FOR ULNAR-MAMMARY TITLE 2 SYNDROME, BOUND TO A PALINDROMIC DNA SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-BOX TRANSCRIPTION FACTOR TBX3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: T-DOMAIN RESIDUES 101-291; COMPND 5 SYNONYM: TBX3 TRANSCRIPTION FACTOR, T-BOX PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*TP*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP* COMPND 9 AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*T)-3'; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: PALINDROMIC BINDING SITE; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7-7; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, TBX3, T-BOX TRANSCRIPTION FACTOR, ULNAR-MAMMARY KEYWDS 2 SYNDROME, HOLT-ORAM-SYNDROME, IG-FOLD, DNA-BINDING, REPRESSOR, KEYWDS 3 NUCLEAR PROTEIN, DEVELOPMENTAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.COLL,C.W.MULLER REVDAT 4 13-DEC-23 1H6F 1 REMARK LINK REVDAT 3 28-MAR-18 1H6F 1 TITLE SOURCE REMARK REVDAT 2 24-FEB-09 1H6F 1 VERSN REVDAT 1 19-APR-02 1H6F 0 JRNL AUTH M.COLL,J.G.SEIDMAN,C.W.MULLER JRNL TITL STRUCTURE OF THE DNA-BOUND T-BOX DOMAIN OF HUMAN TBX3, A JRNL TITL 2 TRANSCRIPTION FACTOR RESPONSIBLE FOR ULNAR- MAMMARY SYNDROME JRNL REF STRUCTURE V. 10 343 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12005433 JRNL DOI 10.1016/S0969-2126(02)00722-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.W.MULLER,B.HERMANN REMARK 1 TITL CRYSTALLOGRAPHIC STRUCTURE OF THE T DOMAIN-DNA COMPLEX OF REMARK 1 TITL 2 THE BRACHYURY TRANSCRIPTION FACTOR REMARK 1 REF NATURE V. 389 880 1997 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 9349824 REMARK 1 DOI 10.1038/39929 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 55690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4626 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : 0.2974 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 491 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3065 REMARK 3 NUCLEIC ACID ATOMS : 978 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.858 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.026 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.936 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.720 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1290008181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55690 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, CNS REMARK 200 STARTING MODEL: 1XBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.52000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.65500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.65500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 TRANSCRIPTIONAL REPRESSOR INVOLVED IN DEVELOPMENTAL REMARK 400 PROCESSES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 99 REMARK 465 LYS A 100 REMARK 465 ASP A 101 REMARK 465 THR A 286 REMARK 465 GLY A 287 REMARK 465 ASN A 288 REMARK 465 GLY A 289 REMARK 465 ARG A 290 REMARK 465 ARG A 291 REMARK 465 MET B 99 REMARK 465 THR B 286 REMARK 465 GLY B 287 REMARK 465 ASN B 288 REMARK 465 GLY B 289 REMARK 465 ARG B 290 REMARK 465 ARG B 291 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 104 CD CE NZ REMARK 480 GLN A 115 CD REMARK 480 LYS A 118 CD CE NZ REMARK 480 LYS A 127 CD CE NZ REMARK 480 LYS A 145 CE NZ REMARK 480 LYS A 148 NZ REMARK 480 ASP A 160 CG OD1 OD2 REMARK 480 LYS A 164 CD CE NZ REMARK 480 LYS A 175 NZ REMARK 480 GLU A 195 OE1 OE2 REMARK 480 LYS A 206 CD CE NZ REMARK 480 LYS A 216 CE NZ REMARK 480 ASP A 239 CG OD1 OD2 REMARK 480 LYS A 242 CD CE NZ REMARK 480 TYR A 245 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ASP A 267 OD1 OD2 REMARK 480 LYS A 268 CE NZ REMARK 480 ASP A 285 C CG OD1 OD2 REMARK 480 LYS B 100 CE NZ REMARK 480 LYS B 104 CG CD CE NZ REMARK 480 GLN B 115 CD OE1 NE2 REMARK 480 LYS B 118 CG CD CE NZ REMARK 480 ARG B 119 CD NE CZ NH1 NH2 REMARK 480 LYS B 127 CE NZ REMARK 480 LYS B 145 NZ REMARK 480 LYS B 146 CD CE NZ REMARK 480 LYS B 148 NZ REMARK 480 ASP B 160 CG OD1 OD2 REMARK 480 LYS B 164 CE NZ REMARK 480 HIS B 166 O CG ND1 CD2 CE1 NE2 REMARK 480 ASN B 167 OD1 ND2 REMARK 480 SER B 168 OG REMARK 480 ARG B 169 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 175 CD CE NZ REMARK 480 GLU B 195 CD OE1 OE2 REMARK 480 LYS B 200 CD CE NZ REMARK 480 LYS B 206 CG CD CE NZ REMARK 480 LYS B 216 CE NZ REMARK 480 LEU B 241 CB CG CD1 CD2 REMARK 480 LYS B 242 CB CG CD CE NZ REMARK 480 PRO B 244 CB CG REMARK 480 TYR B 245 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ASP B 267 OD1 OD2 REMARK 480 LYS B 268 CD CE NZ REMARK 480 ASP B 285 OD1 OD2 REMARK 480 DT C 1 O5' C5' C4' O4' O3' REMARK 480 DA C 2 P OP1 OP2 O5' C5' REMARK 480 DA C 3 P REMARK 480 DT D 1 O5' C5' C4' O4' C3' O3' C2' REMARK 480 DT D 1 C1' REMARK 480 DA D 2 P OP1 OP2 O5' C5' C4' C3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 160 45.13 -109.32 REMARK 500 ASP B 102 69.75 -160.33 REMARK 500 ASP B 159 -177.58 -176.72 REMARK 500 ARG B 183 122.91 -37.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 17 0.11 SIDE CHAIN REMARK 500 DT D 17 0.10 SIDE CHAIN REMARK 500 DT D 19 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2068 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1286 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2015 O REMARK 620 2 HOH A2016 O 89.6 REMARK 620 3 HOH A2049 O 90.0 90.1 REMARK 620 4 HOH A2107 O 90.7 88.9 178.8 REMARK 620 5 HOH A2108 O 90.0 179.0 90.8 90.2 REMARK 620 6 HOH A2109 O 179.1 91.3 89.8 89.5 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1286 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST TWO RESIDUES, MET AND LYS, WERE REMARK 999 ADDED AT THE N-TERMINUS FOR CLONING AND EXPRESSION REMARK 999 THE PROTEIN IS THE SPLICE ISOFORM I DBREF 1H6F A 99 100 PDB 1H6F 1H6F 99 100 DBREF 1H6F A 101 291 UNP O15119 TBX3_HUMAN 101 291 DBREF 1H6F B 99 100 PDB 1H6F 1H6F 99 100 DBREF 1H6F B 101 291 UNP O15119 TBX3_HUMAN 101 291 DBREF 1H6F C 1 24 PDB 1H6F 1H6F 1 24 DBREF 1H6F D 1 24 PDB 1H6F 1H6F 1 24 SEQRES 1 A 193 MET LYS ASP ASP PRO LYS VAL HIS LEU GLU ALA LYS GLU SEQRES 2 A 193 LEU TRP ASP GLN PHE HIS LYS ARG GLY THR GLU MET VAL SEQRES 3 A 193 ILE THR LYS SER GLY ARG ARG MET PHE PRO PRO PHE LYS SEQRES 4 A 193 VAL ARG CYS SER GLY LEU ASP LYS LYS ALA LYS TYR ILE SEQRES 5 A 193 LEU LEU MET ASP ILE ILE ALA ALA ASP ASP CYS ARG TYR SEQRES 6 A 193 LYS PHE HIS ASN SER ARG TRP MET VAL ALA GLY LYS ALA SEQRES 7 A 193 ASP PRO GLU MET PRO LYS ARG MET TYR ILE HIS PRO ASP SEQRES 8 A 193 SER PRO ALA THR GLY GLU GLN TRP MET SER LYS VAL VAL SEQRES 9 A 193 THR PHE HIS LYS LEU LYS LEU THR ASN ASN ILE SER ASP SEQRES 10 A 193 LYS HIS GLY PHE THR ILE LEU ASN SER MET HIS LYS TYR SEQRES 11 A 193 GLN PRO ARG PHE HIS ILE VAL ARG ALA ASN ASP ILE LEU SEQRES 12 A 193 LYS LEU PRO TYR SER THR PHE ARG THR TYR LEU PHE PRO SEQRES 13 A 193 GLU THR GLU PHE ILE ALA VAL THR ALA TYR GLN ASN ASP SEQRES 14 A 193 LYS ILE THR GLN LEU LYS ILE ASP ASN ASN PRO PHE ALA SEQRES 15 A 193 LYS GLY PHE ARG ASP THR GLY ASN GLY ARG ARG SEQRES 1 B 193 MET LYS ASP ASP PRO LYS VAL HIS LEU GLU ALA LYS GLU SEQRES 2 B 193 LEU TRP ASP GLN PHE HIS LYS ARG GLY THR GLU MET VAL SEQRES 3 B 193 ILE THR LYS SER GLY ARG ARG MET PHE PRO PRO PHE LYS SEQRES 4 B 193 VAL ARG CYS SER GLY LEU ASP LYS LYS ALA LYS TYR ILE SEQRES 5 B 193 LEU LEU MET ASP ILE ILE ALA ALA ASP ASP CYS ARG TYR SEQRES 6 B 193 LYS PHE HIS ASN SER ARG TRP MET VAL ALA GLY LYS ALA SEQRES 7 B 193 ASP PRO GLU MET PRO LYS ARG MET TYR ILE HIS PRO ASP SEQRES 8 B 193 SER PRO ALA THR GLY GLU GLN TRP MET SER LYS VAL VAL SEQRES 9 B 193 THR PHE HIS LYS LEU LYS LEU THR ASN ASN ILE SER ASP SEQRES 10 B 193 LYS HIS GLY PHE THR ILE LEU ASN SER MET HIS LYS TYR SEQRES 11 B 193 GLN PRO ARG PHE HIS ILE VAL ARG ALA ASN ASP ILE LEU SEQRES 12 B 193 LYS LEU PRO TYR SER THR PHE ARG THR TYR LEU PHE PRO SEQRES 13 B 193 GLU THR GLU PHE ILE ALA VAL THR ALA TYR GLN ASN ASP SEQRES 14 B 193 LYS ILE THR GLN LEU LYS ILE ASP ASN ASN PRO PHE ALA SEQRES 15 B 193 LYS GLY PHE ARG ASP THR GLY ASN GLY ARG ARG SEQRES 1 C 24 DT DA DA DT DT DT DC DA DC DA DC DC DT SEQRES 2 C 24 DA DG DG DT DG DT DG DA DA DA DT SEQRES 1 D 24 DT DA DA DT DT DT DC DA DC DA DC DC DT SEQRES 2 D 24 DA DG DG DT DG DT DG DA DA DA DT HET MG A1286 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG MG 2+ FORMUL 6 HOH *611(H2 O) HELIX 1 1 ALA A 109 GLY A 120 1 12 HELIX 2 2 GLY A 194 MET A 198 1 5 HELIX 3 3 ASP A 239 SER A 246 5 8 HELIX 4 4 PRO A 254 GLU A 257 5 4 HELIX 5 5 ASN A 266 ASN A 277 1 12 HELIX 6 6 PRO A 278 ARG A 284 5 7 HELIX 7 7 ALA B 109 GLY B 120 1 12 HELIX 8 8 GLY B 194 SER B 199 1 6 HELIX 9 9 ASP B 239 LEU B 243 5 5 HELIX 10 10 PRO B 254 GLU B 257 5 4 HELIX 11 11 ASN B 266 ASN B 277 1 12 HELIX 12 12 PRO B 278 ARG B 284 5 7 SHEET 1 AA 3 LYS A 104 LEU A 107 0 SHEET 2 AA 3 LYS A 137 SER A 141 -1 O ARG A 139 N HIS A 106 SHEET 3 AA 3 VAL A 202 THR A 203 -1 O VAL A 202 N VAL A 138 SHEET 1 AB 4 GLU A 122 VAL A 124 0 SHEET 2 AB 4 PHE A 258 VAL A 261 1 O ILE A 259 N MET A 123 SHEET 3 AB 4 HIS A 226 VAL A 235 -1 O HIS A 226 N ALA A 260 SHEET 4 AB 4 LYS A 148 HIS A 166 -1 O ILE A 150 N VAL A 235 SHEET 1 AC 4 GLU A 122 VAL A 124 0 SHEET 2 AC 4 PHE A 258 VAL A 261 1 O ILE A 259 N MET A 123 SHEET 3 AC 4 HIS A 226 VAL A 235 -1 O HIS A 226 N ALA A 260 SHEET 4 AC 4 ARG A 249 LEU A 252 -1 O ARG A 249 N ILE A 234 SHEET 1 AD 2 LEU A 209 THR A 210 0 SHEET 2 AD 2 THR A 220 ILE A 221 1 O THR A 220 N THR A 210 SHEET 1 BA 3 LYS B 104 LEU B 107 0 SHEET 2 BA 3 LYS B 137 SER B 141 -1 O ARG B 139 N HIS B 106 SHEET 3 BA 3 VAL B 202 THR B 203 -1 O VAL B 202 N VAL B 138 SHEET 1 BB 4 GLU B 122 VAL B 124 0 SHEET 2 BB 4 PHE B 258 VAL B 261 1 O ILE B 259 N MET B 123 SHEET 3 BB 4 HIS B 226 VAL B 235 -1 O HIS B 226 N ALA B 260 SHEET 4 BB 4 LYS B 148 HIS B 166 -1 O ILE B 150 N VAL B 235 SHEET 1 BC 4 GLU B 122 VAL B 124 0 SHEET 2 BC 4 PHE B 258 VAL B 261 1 O ILE B 259 N MET B 123 SHEET 3 BC 4 HIS B 226 VAL B 235 -1 O HIS B 226 N ALA B 260 SHEET 4 BC 4 ARG B 249 LEU B 252 -1 O ARG B 249 N ILE B 234 SHEET 1 BD 2 LEU B 209 THR B 210 0 SHEET 2 BD 2 THR B 220 ILE B 221 1 O THR B 220 N THR B 210 LINK MG MG A1286 O HOH A2015 1555 1555 2.00 LINK MG MG A1286 O HOH A2016 1555 1555 2.01 LINK MG MG A1286 O HOH A2049 1555 1555 2.01 LINK MG MG A1286 O HOH A2107 1555 1655 2.02 LINK MG MG A1286 O HOH A2108 1555 1655 2.02 LINK MG MG A1286 O HOH A2109 1555 1655 2.02 CISPEP 1 PHE A 133 PRO A 134 0 -0.28 CISPEP 2 SER A 190 PRO A 191 0 -0.61 CISPEP 3 PHE B 133 PRO B 134 0 0.10 CISPEP 4 SER B 190 PRO B 191 0 -0.65 SITE 1 AC1 6 HOH A2015 HOH A2016 HOH A2049 HOH A2107 SITE 2 AC1 6 HOH A2108 HOH A2109 CRYST1 39.040 104.910 125.310 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007980 0.00000 MTRIX1 1 -0.999960 0.003650 0.007780 14.47800 1 MTRIX2 1 0.003590 0.999960 -0.008130 0.52063 1 MTRIX3 1 -0.007810 -0.008100 -0.999940 63.14726 1