PDB Short entry for 1H8O HEADER ANTIBODY 14-FEB-01 1H8O TITLE THREE-DIMENSIONAL STRUCTURE OF ANTI-AMPICILLIN SINGLE CHAIN FV TITLE 2 FRAGMENT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTANT AL2 6E7P9G; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FV FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SINGLE CHAIN FV ANTIBODY IN WHICH THE VL AND VH COMPND 7 FRAGMENTS ARE JOINED BY A GGGGSGGGGSGGGGSGGGGS LINKER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: RV308; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAK3000 KEYWDS ANTIBODY, FV FRAGMENT, ANTI-AMPICILLIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BURMESTER,S.SPINELLI,L.PUGLIESE,A.KREBBER,A.HONEGGER,S.JUNG, AUTHOR 2 B.SCHIMMELE,C.CAMBILLAU,A.PLUCKTHUN REVDAT 5 29-MAR-17 1H8O 1 SOURCE REVDAT 4 24-FEB-09 1H8O 1 VERSN REVDAT 3 01-AUG-03 1H8O 1 HELIX CRYST1 REVDAT 2 27-NOV-01 1H8O 1 JRNL REVDAT 1 02-AUG-01 1H8O 0 JRNL AUTH J.BURMESTER,S.SPINELLI,L.PUGLIESE,A.KREBBER,A.HONEGGER, JRNL AUTH 2 S.JUNG,B.SCHIMMELE,C.CAMBILLAU,A.PLUCKTHUN JRNL TITL SELECTION, CHARACTERIZATION AND X-RAY STRUCTURE OF JRNL TITL 2 ANTI-AMPICILLIN SINGLE-CHAIN FV FRAGMENTS FROM JRNL TITL 3 PHAGE-DISPLAYED MURINE ANTIBODY LIBRARIES JRNL REF J.MOL.BIOL. V. 309 671 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11397088 JRNL DOI 10.1006/JMBI.2001.4663 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1342809.820 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 13604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2014 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 175 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 31.05 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-01. REMARK 100 THE PDBE ID CODE IS EBI-5896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14189 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.84500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.63000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.63000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 TYR A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 GLY A 115 REMARK 465 SER A 116 REMARK 465 GLY A 117 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 SER A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 SER A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ALA A 244 REMARK 465 SER A 245 REMARK 465 GLY A 246 REMARK 465 ALA A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 ASP B 1 REMARK 465 TYR B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 GLY B 115 REMARK 465 SER B 116 REMARK 465 GLY B 117 REMARK 465 GLY B 118 REMARK 465 GLY B 119 REMARK 465 GLY B 120 REMARK 465 SER B 121 REMARK 465 GLY B 122 REMARK 465 GLY B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 SER B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 GLY B 129 REMARK 465 GLY B 130 REMARK 465 SER B 131 REMARK 465 GLN B 132 REMARK 465 ALA B 244 REMARK 465 SER B 245 REMARK 465 GLY B 246 REMARK 465 ALA B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ARG A 111 CA C O CB CG CD NE REMARK 470 ARG A 111 CZ NH1 NH2 REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 ALA A 243 CA C O CB REMARK 470 GLY B 112 CA C O REMARK 470 ALA B 243 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 87 C ASP B 88 N 0.244 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 26 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 ALA B 87 CA - C - N ANGL. DEV. = -20.2 DEGREES REMARK 500 ALA B 87 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -70.26 -27.98 REMARK 500 ALA A 54 -31.55 63.92 REMARK 500 ARG A 64 -33.85 -28.85 REMARK 500 SER A 79 -74.19 -53.76 REMARK 500 ASN A 80 78.17 -107.53 REMARK 500 GLU A 84 -3.05 -59.66 REMARK 500 ALA A 87 -171.50 -177.28 REMARK 500 LYS A 110 -47.52 -152.82 REMARK 500 ALA A 223 -179.37 175.34 REMARK 500 TRP A 230 109.56 -46.04 REMARK 500 ALA B 54 -51.31 45.66 REMARK 500 PRO B 62 156.70 -48.51 REMARK 500 THR B 72 -25.22 -140.63 REMARK 500 ASN B 80 71.01 44.07 REMARK 500 ALA B 223 -177.71 -176.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA B 87 12.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H8N RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF ANTI-AMPICILLIN SINGLE CHAIN FV REMARK 900 FRAGMENT FROM PHAGE-DISPLAYED MURINE ANTIBODY LIBRARIES REMARK 900 RELATED ID: 1H8S RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF ANTI-AMPICILLIN SINGLE CHAIN FV REMARK 900 FRAGMENT COMPLEXED WITH THE HAPTEN. DBREF 1H8O A 1 252 PDB 1H8O 1H8O 1 252 DBREF 1H8O B 1 252 PDB 1H8O 1H8O 1 252 SEQRES 1 A 252 ASP TYR LYS ASP ILE VAL LEU THR GLN SER HIS LYS PHE SEQRES 2 A 252 MET SER THR SER VAL GLY ASP ARG VAL SER ILE THR CYS SEQRES 3 A 252 LYS ALA SER GLN ASP VAL GLY THR ALA VAL ALA TRP TYR SEQRES 4 A 252 GLN GLN LYS PRO GLY GLN SER PRO LYS LEU LEU ILE TYR SEQRES 5 A 252 TRP ALA SER THR ARG HIS THR GLY VAL PRO ASP ARG PHE SEQRES 6 A 252 THR GLY SER GLY SER GLY THR ASP PHE THR LEU THR ILE SEQRES 7 A 252 SER ASN VAL GLN SER GLU ASP LEU ALA ASP TYR PHE CYS SEQRES 8 A 252 GLN GLN TYR SER SER TYR PRO LEU THR PHE GLY ALA GLY SEQRES 9 A 252 THR LYS LEU GLU LEU LYS ARG GLY GLY GLY GLY SER GLY SEQRES 10 A 252 GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 11 A 252 SER GLN VAL GLN LEU GLN GLU PRO GLY GLY GLU LEU VAL SEQRES 12 A 252 ARG PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER SEQRES 13 A 252 GLY TYR THR PHE THR SER TYR TRP ILE ASN TRP VAL LYS SEQRES 14 A 252 GLN ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASN ILE SEQRES 15 A 252 TYR PRO SER ASP SER TYR THR ASN TYR ASN GLN LYS PHE SEQRES 16 A 252 LYS ASP LYS ALA THR LEU THR VAL ASP LYS SER SER SER SEQRES 17 A 252 THR ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SEQRES 18 A 252 SER ALA VAL TYR PHE CYS ALA ARG TRP GLY TYR TRP GLY SEQRES 19 A 252 GLN GLY THR LEU VAL THR VAL SER ALA ALA SER GLY ALA SEQRES 20 A 252 HIS HIS HIS HIS HIS SEQRES 1 B 252 ASP TYR LYS ASP ILE VAL LEU THR GLN SER HIS LYS PHE SEQRES 2 B 252 MET SER THR SER VAL GLY ASP ARG VAL SER ILE THR CYS SEQRES 3 B 252 LYS ALA SER GLN ASP VAL GLY THR ALA VAL ALA TRP TYR SEQRES 4 B 252 GLN GLN LYS PRO GLY GLN SER PRO LYS LEU LEU ILE TYR SEQRES 5 B 252 TRP ALA SER THR ARG HIS THR GLY VAL PRO ASP ARG PHE SEQRES 6 B 252 THR GLY SER GLY SER GLY THR ASP PHE THR LEU THR ILE SEQRES 7 B 252 SER ASN VAL GLN SER GLU ASP LEU ALA ASP TYR PHE CYS SEQRES 8 B 252 GLN GLN TYR SER SER TYR PRO LEU THR PHE GLY ALA GLY SEQRES 9 B 252 THR LYS LEU GLU LEU LYS ARG GLY GLY GLY GLY SER GLY SEQRES 10 B 252 GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 11 B 252 SER GLN VAL GLN LEU GLN GLU PRO GLY GLY GLU LEU VAL SEQRES 12 B 252 ARG PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER SEQRES 13 B 252 GLY TYR THR PHE THR SER TYR TRP ILE ASN TRP VAL LYS SEQRES 14 B 252 GLN ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASN ILE SEQRES 15 B 252 TYR PRO SER ASP SER TYR THR ASN TYR ASN GLN LYS PHE SEQRES 16 B 252 LYS ASP LYS ALA THR LEU THR VAL ASP LYS SER SER SER SEQRES 17 B 252 THR ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SEQRES 18 B 252 SER ALA VAL TYR PHE CYS ALA ARG TRP GLY TYR TRP GLY SEQRES 19 B 252 GLN GLY THR LEU VAL THR VAL SER ALA ALA SER GLY ALA SEQRES 20 B 252 HIS HIS HIS HIS HIS HET SO4 A1000 5 HET SO4 A1001 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *110(H2 O) HELIX 1 1 GLN A 82 LEU A 86 5 5 HELIX 2 2 THR A 159 TYR A 163 5 5 HELIX 3 3 GLN A 193 LYS A 196 5 4 HELIX 4 4 THR A 218 SER A 222 5 5 HELIX 5 5 GLN B 82 LEU B 86 5 5 HELIX 6 6 THR B 159 TYR B 163 5 5 HELIX 7 7 GLN B 193 LYS B 196 5 4 HELIX 8 8 LYS B 205 SER B 207 5 3 HELIX 9 9 THR B 218 SER B 222 5 5 SHEET 1 AA 4 LEU A 7 GLN A 9 0 SHEET 2 AA 4 VAL A 22 ALA A 28 -1 O LYS A 27 N THR A 8 SHEET 3 AA 4 ASP A 73 ILE A 78 -1 O PHE A 74 N CYS A 26 SHEET 4 AA 4 PHE A 65 SER A 70 -1 O THR A 66 N THR A 77 SHEET 1 AB 6 PHE A 13 THR A 16 0 SHEET 2 AB 6 THR A 105 LEU A 109 1 O LYS A 106 N MET A 14 SHEET 3 AB 6 ASP A 88 GLN A 93 -1 O TYR A 89 N THR A 105 SHEET 4 AB 6 VAL A 36 GLN A 41 -1 O ALA A 37 N GLN A 92 SHEET 5 AB 6 LYS A 48 TYR A 52 -1 O LYS A 48 N GLN A 40 SHEET 6 AB 6 THR A 56 ARG A 57 -1 O THR A 56 N TYR A 52 SHEET 1 AC 4 PHE A 13 THR A 16 0 SHEET 2 AC 4 THR A 105 LEU A 109 1 O LYS A 106 N MET A 14 SHEET 3 AC 4 ASP A 88 GLN A 93 -1 O TYR A 89 N THR A 105 SHEET 4 AC 4 THR A 100 PHE A 101 -1 O THR A 100 N GLN A 93 SHEET 1 AD 6 GLY A 140 VAL A 143 0 SHEET 2 AD 6 THR A 237 VAL A 241 1 O LEU A 238 N GLU A 141 SHEET 3 AD 6 ALA A 223 ARG A 229 -1 O ALA A 223 N VAL A 239 SHEET 4 AD 6 ILE A 165 GLN A 170 -1 O ASN A 166 N ALA A 228 SHEET 5 AD 6 LEU A 176 ILE A 182 -1 O GLU A 177 N LYS A 169 SHEET 6 AD 6 THR A 189 TYR A 191 -1 O ASN A 190 N ASN A 181 SHEET 1 AE 4 GLY A 140 VAL A 143 0 SHEET 2 AE 4 THR A 237 VAL A 241 1 O LEU A 238 N GLU A 141 SHEET 3 AE 4 ALA A 223 ARG A 229 -1 O ALA A 223 N VAL A 239 SHEET 4 AE 4 TYR A 232 TRP A 233 -1 O TYR A 232 N ARG A 229 SHEET 1 AF 3 VAL A 149 LYS A 154 0 SHEET 2 AF 3 THR A 209 LEU A 214 -1 O ALA A 210 N CYS A 153 SHEET 3 AF 3 LEU A 201 ASP A 204 -1 O THR A 202 N TYR A 211 SHEET 1 BA 4 LEU B 7 GLN B 9 0 SHEET 2 BA 4 VAL B 22 ALA B 28 -1 O LYS B 27 N THR B 8 SHEET 3 BA 4 ASP B 73 ILE B 78 -1 O PHE B 74 N CYS B 26 SHEET 4 BA 4 PHE B 65 SER B 70 -1 O THR B 66 N THR B 77 SHEET 1 BB 6 PHE B 13 THR B 16 0 SHEET 2 BB 6 THR B 105 LEU B 109 1 O LYS B 106 N MET B 14 SHEET 3 BB 6 ASP B 88 GLN B 93 -1 O TYR B 89 N THR B 105 SHEET 4 BB 6 VAL B 36 GLN B 41 -1 O ALA B 37 N GLN B 92 SHEET 5 BB 6 LYS B 48 TYR B 52 -1 O LYS B 48 N GLN B 40 SHEET 6 BB 6 THR B 56 ARG B 57 -1 O THR B 56 N TYR B 52 SHEET 1 BC 4 PHE B 13 THR B 16 0 SHEET 2 BC 4 THR B 105 LEU B 109 1 O LYS B 106 N MET B 14 SHEET 3 BC 4 ASP B 88 GLN B 93 -1 O TYR B 89 N THR B 105 SHEET 4 BC 4 THR B 100 PHE B 101 -1 O THR B 100 N GLN B 93 SHEET 1 BD 6 GLY B 140 VAL B 143 0 SHEET 2 BD 6 THR B 237 VAL B 241 1 O LEU B 238 N GLU B 141 SHEET 3 BD 6 ALA B 223 ARG B 229 -1 O ALA B 223 N VAL B 239 SHEET 4 BD 6 ILE B 165 GLN B 170 -1 O ASN B 166 N ALA B 228 SHEET 5 BD 6 LEU B 176 ILE B 182 -1 O GLU B 177 N LYS B 169 SHEET 6 BD 6 THR B 189 TYR B 191 -1 O ASN B 190 N ASN B 181 SHEET 1 BE 4 GLY B 140 VAL B 143 0 SHEET 2 BE 4 THR B 237 VAL B 241 1 O LEU B 238 N GLU B 141 SHEET 3 BE 4 ALA B 223 ARG B 229 -1 O ALA B 223 N VAL B 239 SHEET 4 BE 4 TYR B 232 TRP B 233 -1 O TYR B 232 N ARG B 229 SHEET 1 BF 3 VAL B 149 LYS B 154 0 SHEET 2 BF 3 THR B 209 LEU B 214 -1 O ALA B 210 N CYS B 153 SHEET 3 BF 3 ALA B 199 ASP B 204 -1 O THR B 200 N GLN B 213 SSBOND 1 CYS A 26 CYS A 91 1555 1555 2.01 SSBOND 2 CYS A 153 CYS A 227 1555 1555 2.02 SSBOND 3 CYS B 26 CYS B 91 1555 1555 2.02 SSBOND 4 CYS B 153 CYS B 227 1555 1555 2.03 CISPEP 1 TYR A 97 PRO A 98 0 0.00 CISPEP 2 GLU A 137 PRO A 138 0 -0.52 CISPEP 3 TYR B 97 PRO B 98 0 -0.42 CISPEP 4 GLU B 137 PRO B 138 0 0.46 SITE 1 AC1 4 HIS A 11 LYS A 12 PHE A 13 ARG B 111 SITE 1 AC2 2 LYS A 12 ARG B 111 CRYST1 59.690 89.850 97.260 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010282 0.00000