PDB Short entry for 1H9T HEADER TRANSCRIPTIONAL REGULATION 19-MAR-01 1H9T TITLE FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN TITLE 2 COMPLEX WITH FADB OPERATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID METABOLISM REGULATOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*AP*TP*CP*TP*GP*GP*TP*AP*CP*GP*AP* COMPND 7 CP*CP*AP*GP*AP*TP*C)-3'; COMPND 8 CHAIN: X; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(*GP*AP*TP*CP*TP*GP*GP*TP*CP*GP*TP*AP* COMPND 12 CP*CP*AP*GP*AP*TP*G)-3'; COMPND 13 CHAIN: Y; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 MOL_ID: 3; SOURCE 9 SYNTHETIC: YES KEYWDS TRANSCRIPTIONAL REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR D.M.F.VAN AALTEN,C.C.DIRUSSO,J.KNUDSEN REVDAT 5 13-DEC-23 1H9T 1 ATOM REVDAT 4 24-FEB-09 1H9T 1 VERSN REVDAT 3 31-AUG-01 1H9T 1 REMARK SEQRES HELIX ATOM REVDAT 3 2 1 MASTER REVDAT 2 15-APR-01 1H9T 1 JRNL REVDAT 1 04-APR-01 1H9T 0 JRNL AUTH D.M.F.VAN AALTEN,C.C.DIRUSSO,J.KNUDSEN JRNL TITL THE STRUCTURAL BASIS OF ACYL COENZYME A-DEPENDENT REGULATION JRNL TITL 2 OF THE TRANSCRIPTION FACTOR FADR JRNL REF EMBO J. V. 20 2041 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11296236 JRNL DOI 10.1093/EMBOJ/20.8.2041 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.M.VAN AALTEN,C.C.DIRUSSO,J.KNUDSEN,R.K.WIERENGA REMARK 1 TITL CRYSTAL STRUCTURE OF FADR, A FATTY ACID-RESPONSIVE REMARK 1 TITL 2 TRANSCRIPTION FACTOR WITH A NOVEL ACYL COENZYME A-BINDING REMARK 1 TITL 3 FOLD REMARK 1 REF EMBO J. V. 19 5167 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 11013219 REMARK 1 DOI 10.1093/EMBOJ/19.19.5167 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.M.F.VAN AALTEN,J.KNUDSEN,C.C.DIRUSSO,T.KOKKO,R.K.WIERENGA REMARK 1 TITL CRYSTALLIZATION AND X-RAY DIFFRACTION STUDIES OF THE REMARK 1 TITL 2 FATTY-ACID RESPONSIVE TRANSCRIPTION FACTOR FADR FROM REMARK 1 TITL 3 ESCHERICHIA COLI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 469 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 10739923 REMARK 1 DOI 10.1107/S0907444900000937 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 13374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 391 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3631 REMARK 3 NUCLEIC ACID ATOMS : 773 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.37000 REMARK 3 B22 (A**2) : 5.37000 REMARK 3 B33 (A**2) : -8.05000 REMARK 3 B12 (A**2) : 2.68000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.000 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; NULL REMARK 3 ANGLE DISTANCE (A) : 1.700 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.220 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.310 ; 2.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1290006005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02467 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88082 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1E2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE PH 6.5, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.60867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 223.21733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 167.41300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 279.02167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.80433 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.60867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 223.21733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 279.02167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 167.41300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.80433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROTEIN AND THE TWO DNA CHAINS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -3 REMARK 465 ALA A -2 REMARK 465 ASP A -1 REMARK 465 ARG A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 231 REMARK 465 GLY A 232 REMARK 465 ASP A 233 REMARK 465 PHE B -3 REMARK 465 ALA B -2 REMARK 465 ASP B -1 REMARK 465 ARG B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ILE B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 231 REMARK 465 GLY B 232 REMARK 465 ASP B 233 REMARK 465 LEU B 234 REMARK 465 ALA B 235 REMARK 465 ILE B 236 REMARK 465 GLN B 237 REMARK 465 GLY B 238 REMARK 465 ARG B 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 227 CG CD OE1 NE2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 18 CG CD OE1 OE2 REMARK 480 ASP B 99 CG OD1 OD2 REMARK 480 GLU B 184 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 200 AU AU B 1231 1.36 REMARK 500 C CYS B 200 AU AU B 1231 1.63 REMARK 500 CA CYS B 200 AU AU B 1231 1.73 REMARK 500 O THR A 106 OG SER A 109 2.03 REMARK 500 O LEU A 152 N ALA A 155 2.04 REMARK 500 O ARG A 239 O HOH A 2013 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2009 O HOH B 2009 12566 0.39 REMARK 500 O HOH B 2010 O HOH B 2010 12566 0.79 REMARK 500 CB ASP A 206 CB ASP A 206 8676 1.95 REMARK 500 O HOH A 2011 O HOH A 2011 10665 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC X 4 O3' DC X 4 C3' -0.047 REMARK 500 DG X 7 O3' DG X 7 C3' -0.068 REMARK 500 DA X 15 O3' DA X 15 C3' -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC X 1 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT X 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT X 5 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT X 5 N3 - C4 - O4 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT X 5 C5 - C4 - O4 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT X 5 C4 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG X 6 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG X 6 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DA X 15 O4' - C1' - N9 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG X 16 O4' - C1' - N9 ANGL. DEV. = -8.2 DEGREES REMARK 500 DA X 17 O4' - C1' - N9 ANGL. DEV. = -9.6 DEGREES REMARK 500 DT Y 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC Y 4 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT Y 5 O4' - C1' - N1 ANGL. DEV. = 9.4 DEGREES REMARK 500 DT Y 5 N3 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT Y 5 N3 - C4 - O4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT Y 5 C5 - C4 - O4 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT Y 5 C4 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG Y 7 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG Y 7 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT Y 8 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT Y 8 C5 - C4 - O4 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT Y 11 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA Y 12 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA Y 15 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG Y 16 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DT Y 18 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT Y 18 N3 - C4 - O4 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT Y 18 C5 - C4 - O4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG Y 19 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 6 -140.32 76.73 REMARK 500 TYR A 15 -80.15 -68.92 REMARK 500 TRP A 21 -31.71 -38.35 REMARK 500 ASN A 22 40.97 -100.01 REMARK 500 ASN A 23 15.54 37.97 REMARK 500 PRO A 32 157.85 -36.51 REMARK 500 TRP A 60 -94.46 -66.52 REMARK 500 THR A 62 77.76 -153.64 REMARK 500 HIS A 65 -87.52 -60.00 REMARK 500 TRP A 75 3.82 -60.99 REMARK 500 SER A 78 133.81 174.18 REMARK 500 LEU A 80 -17.94 -44.59 REMARK 500 ASN A 81 14.36 -62.92 REMARK 500 LEU A 83 -71.35 -21.91 REMARK 500 GLU A 84 -70.41 -40.04 REMARK 500 SER A 93 75.88 -102.11 REMARK 500 SER A 103 37.90 -66.85 REMARK 500 VAL A 104 -58.90 -140.62 REMARK 500 THR A 106 -92.19 -82.87 REMARK 500 ASN A 107 -55.27 -26.87 REMARK 500 PHE A 117 -74.37 -75.88 REMARK 500 ALA A 124 -8.33 -57.99 REMARK 500 LEU A 128 -4.01 -49.60 REMARK 500 ALA A 131 9.04 -57.15 REMARK 500 ALA A 138 -67.70 -28.09 REMARK 500 ALA A 153 -78.53 -26.56 REMARK 500 LYS A 169 -77.24 -1.08 REMARK 500 ARG A 177 -18.62 -43.39 REMARK 500 HIS A 178 -65.57 -99.25 REMARK 500 ASN A 182 94.73 -65.74 REMARK 500 GLU A 202 31.55 -99.92 REMARK 500 ALA A 204 43.67 -105.38 REMARK 500 HIS A 205 -77.64 -14.48 REMARK 500 ASP A 206 -48.78 -18.19 REMARK 500 VAL A 208 -81.71 -129.84 REMARK 500 THR A 211 -84.08 -47.71 REMARK 500 GLU A 218 -74.45 -53.85 REMARK 500 LYS A 228 55.55 -64.81 REMARK 500 ASN A 229 -27.13 -147.43 REMARK 500 ILE A 236 147.13 74.55 REMARK 500 GLN A 237 -103.61 -137.37 REMARK 500 GLN B 6 -151.62 80.88 REMARK 500 PRO B 8 -72.27 -38.12 REMARK 500 TYR B 15 -79.02 -62.36 REMARK 500 ILE B 16 -31.96 -36.54 REMARK 500 ASN B 23 -1.55 50.48 REMARK 500 THR B 46 -73.92 -34.65 REMARK 500 TRP B 60 -99.10 -49.59 REMARK 500 LEU B 61 -166.82 -51.51 REMARK 500 THR B 62 77.61 -169.63 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2001 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B1231 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E2X RELATED DB: PDB REMARK 900 FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI REMARK 900 RELATED ID: 1H9G RELATED DB: PDB REMARK 900 FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI, IN REMARK 900 COMPLEX WITH MYRISTOYL-COA REMARK 900 RELATED ID: 1HW1 RELATED DB: PDB REMARK 900 THE FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY REMARK 900 ACIDMETABOLISM IN ESCHERICHIA COLI REMARK 900 RELATED ID: 1HW2 RELATED DB: PDB REMARK 900 FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACIDMETABOLISM REMARK 900 IN ECHERICHIA COLI DBREF 1H9T A -3 1 PDB 1H9T 1H9T -3 1 DBREF 1H9T A 2 239 UNP P09371 FADR_ECOLI 1 238 DBREF 1H9T B -3 1 PDB 1H9T 1H9T -3 1 DBREF 1H9T B 2 239 UNP P09371 FADR_ECOLI 1 238 DBREF 1H9T X 1 19 PDB 1H9T 1H9T 1 19 DBREF 1H9T Y 1 19 PDB 1H9T 1H9T 1 19 SEQRES 1 A 243 PHE ALA ASP ARG MET VAL ILE LYS ALA GLN SER PRO ALA SEQRES 2 A 243 GLY PHE ALA GLU GLU TYR ILE ILE GLU SER ILE TRP ASN SEQRES 3 A 243 ASN ARG PHE PRO PRO GLY THR ILE LEU PRO ALA GLU ARG SEQRES 4 A 243 GLU LEU SER GLU LEU ILE GLY VAL THR ARG THR THR LEU SEQRES 5 A 243 ARG GLU VAL LEU GLN ARG LEU ALA ARG ASP GLY TRP LEU SEQRES 6 A 243 THR ILE GLN HIS GLY LYS PRO THR LYS VAL ASN ASN PHE SEQRES 7 A 243 TRP GLU THR SER GLY LEU ASN ILE LEU GLU THR LEU ALA SEQRES 8 A 243 ARG LEU ASP HIS GLU SER VAL PRO GLN LEU ILE ASP ASN SEQRES 9 A 243 LEU LEU SER VAL ARG THR ASN ILE SER THR ILE PHE ILE SEQRES 10 A 243 ARG THR ALA PHE ARG GLN HIS PRO ASP LYS ALA GLN GLU SEQRES 11 A 243 VAL LEU ALA THR ALA ASN GLU VAL ALA ASP HIS ALA ASP SEQRES 12 A 243 ALA PHE ALA GLU LEU ASP TYR ASN ILE PHE ARG GLY LEU SEQRES 13 A 243 ALA PHE ALA SER GLY ASN PRO ILE TYR GLY LEU ILE LEU SEQRES 14 A 243 ASN GLY MET LYS GLY LEU TYR THR ARG ILE GLY ARG HIS SEQRES 15 A 243 TYR PHE ALA ASN PRO GLU ALA ARG SER LEU ALA LEU GLY SEQRES 16 A 243 PHE TYR HIS LYS LEU SER ALA LEU CYS SER GLU GLY ALA SEQRES 17 A 243 HIS ASP GLN VAL TYR GLU THR VAL ARG ARG TYR GLY HIS SEQRES 18 A 243 GLU SER GLY GLU ILE TRP HIS ARG MET GLN LYS ASN LEU SEQRES 19 A 243 PRO GLY ASP LEU ALA ILE GLN GLY ARG SEQRES 1 B 243 PHE ALA ASP ARG MET VAL ILE LYS ALA GLN SER PRO ALA SEQRES 2 B 243 GLY PHE ALA GLU GLU TYR ILE ILE GLU SER ILE TRP ASN SEQRES 3 B 243 ASN ARG PHE PRO PRO GLY THR ILE LEU PRO ALA GLU ARG SEQRES 4 B 243 GLU LEU SER GLU LEU ILE GLY VAL THR ARG THR THR LEU SEQRES 5 B 243 ARG GLU VAL LEU GLN ARG LEU ALA ARG ASP GLY TRP LEU SEQRES 6 B 243 THR ILE GLN HIS GLY LYS PRO THR LYS VAL ASN ASN PHE SEQRES 7 B 243 TRP GLU THR SER GLY LEU ASN ILE LEU GLU THR LEU ALA SEQRES 8 B 243 ARG LEU ASP HIS GLU SER VAL PRO GLN LEU ILE ASP ASN SEQRES 9 B 243 LEU LEU SER VAL ARG THR ASN ILE SER THR ILE PHE ILE SEQRES 10 B 243 ARG THR ALA PHE ARG GLN HIS PRO ASP LYS ALA GLN GLU SEQRES 11 B 243 VAL LEU ALA THR ALA ASN GLU VAL ALA ASP HIS ALA ASP SEQRES 12 B 243 ALA PHE ALA GLU LEU ASP TYR ASN ILE PHE ARG GLY LEU SEQRES 13 B 243 ALA PHE ALA SER GLY ASN PRO ILE TYR GLY LEU ILE LEU SEQRES 14 B 243 ASN GLY MET LYS GLY LEU TYR THR ARG ILE GLY ARG HIS SEQRES 15 B 243 TYR PHE ALA ASN PRO GLU ALA ARG SER LEU ALA LEU GLY SEQRES 16 B 243 PHE TYR HIS LYS LEU SER ALA LEU CYS SER GLU GLY ALA SEQRES 17 B 243 HIS ASP GLN VAL TYR GLU THR VAL ARG ARG TYR GLY HIS SEQRES 18 B 243 GLU SER GLY GLU ILE TRP HIS ARG MET GLN LYS ASN LEU SEQRES 19 B 243 PRO GLY ASP LEU ALA ILE GLN GLY ARG SEQRES 1 X 19 DC DA DT DC DT DG DG DT DA DC DG DA DC SEQRES 2 X 19 DC DA DG DA DT DC SEQRES 1 Y 19 DG DA DT DC DT DG DG DT DC DG DT DA DC SEQRES 2 Y 19 DC DA DG DA DT DG HET AU A1240 1 HET CL A1241 1 HET CL A1242 1 HET AU B1231 1 HET CL B1232 1 HETNAM AU GOLD ION HETNAM CL CHLORIDE ION FORMUL 5 AU 2(AU 1+) FORMUL 6 CL 3(CL 1-) FORMUL 10 HOH *25(H2 O) HELIX 1 1 SER A 7 ASN A 22 1 16 HELIX 2 2 ALA A 33 GLY A 42 1 10 HELIX 3 3 THR A 44 GLY A 59 1 16 HELIX 4 4 ASN A 73 THR A 77 5 5 HELIX 5 5 GLY A 79 ASN A 81 5 3 HELIX 6 6 ILE A 82 ARG A 88 1 7 HELIX 7 7 VAL A 94 THR A 106 1 13 HELIX 8 8 THR A 106 GLN A 119 1 14 HELIX 9 9 ASP A 122 ALA A 129 1 8 HELIX 10 10 THR A 130 GLU A 133 5 4 HELIX 11 11 HIS A 137 GLY A 157 1 21 HELIX 12 12 PRO A 159 PHE A 180 1 22 HELIX 13 13 ASN A 182 GLU A 202 1 21 HELIX 14 14 VAL A 208 LYS A 228 1 21 HELIX 15 15 SER B 7 ASN B 22 1 16 HELIX 16 16 ALA B 33 GLY B 42 1 10 HELIX 17 17 THR B 44 GLY B 59 1 16 HELIX 18 18 GLY B 79 ILE B 82 5 4 HELIX 19 19 LEU B 83 ARG B 88 1 6 HELIX 20 20 SER B 93 GLN B 119 1 27 HELIX 21 21 HIS B 120 ALA B 129 1 10 HELIX 22 22 HIS B 137 SER B 156 1 20 HELIX 23 23 PRO B 159 LYS B 169 1 11 HELIX 24 24 MET B 168 PHE B 180 1 13 HELIX 25 25 PRO B 183 GLY B 203 1 21 HELIX 26 26 VAL B 208 LYS B 228 1 21 SITE 1 AC1 1 GLN A 53 SITE 1 AC2 1 ARG A 174 SITE 1 AC3 4 PRO A 121 GLN A 125 CYS A 200 SER A 201 SITE 1 AC4 3 LEU B 199 CYS B 200 SER B 201 CRYST1 92.992 92.992 334.826 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010754 0.006209 0.000000 0.00000 SCALE2 0.000000 0.012417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002987 0.00000 MTRIX1 1 0.998860 -0.044300 -0.008090 -9.64100 1 MTRIX2 1 -0.043850 0.937880 0.345860 -54.39200 1 MTRIX3 1 -0.007680 0.345110 -0.938030 303.78799 1