PDB Short entry for 1HE1 HEADER SIGNALING PROTEIN 18-NOV-00 1HE1 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE GAP DOMAIN OF THE TITLE 2 PSEUDOMONAS AERUGINOSA EXOS TOXIN AND HUMAN RAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOENZYME S; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: 96-234, GTPASE-ACTIVATING PROTEIN (GAP-DOMAIN); COMPND 5 SYNONYM: EXOS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: 2-184; COMPND 11 SYNONYM: P21-RAC1, RAS-LIKE PROTEIN TC25; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: EXOS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS SIGNALING PROTEIN, SIGNALLING COMPLEX, EXOS, RAC, PSEUDOMONAS KEYWDS 2 AERUGINOSA, GAP, TOXIN, VIRULENCE FACTOR, TRANSITION STATE, PROTEIN- KEYWDS 3 PROTEIN COMPLEX, GTPASE, SIGNAL TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.WURTELE,E.WOLF,K.J.PEDERSON,G.BUCHWALD,M.R.AHMADIAN,J.T.BARBIERI, AUTHOR 2 A.WITTINGHOFER REVDAT 4 13-DEC-23 1HE1 1 REMARK LINK REVDAT 3 24-FEB-09 1HE1 1 VERSN REVDAT 2 24-JUL-07 1HE1 1 COMPND REVDAT 1 02-JAN-01 1HE1 0 JRNL AUTH M.WURTELE,E.WOLF,K.J.PEDERSON,G.BUCHWALD,M.R.AHMADIAN, JRNL AUTH 2 J.T.BARBIERI,A.WITTINGHOFER JRNL TITL HOW THE PSEUDOMONAS AERUGINOSA EXOS TOXIN DOWNREGULATES RAC JRNL REF NAT.STRUCT.BIOL. V. 8 23 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11135665 JRNL DOI 10.1038/83007 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2288865.960 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 53886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2739 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8396 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 439 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 712 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.430 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 53.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GDP.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : GDP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1290005475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 527331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DS6 CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 6000, 3MM NICL2, 100 MM REMARK 280 TRIS/HCL PH8.5, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.01250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.14200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.54350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.14200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.01250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.54350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 19 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU D 19 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 96 -55.98 -129.00 REMARK 500 LYS D 96 -59.85 -125.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2189 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH C2197 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 230 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 211 ND1 REMARK 620 2 HOH A2067 O 176.3 REMARK 620 3 HOH A2115 O 99.8 77.6 REMARK 620 4 HOH A2117 O 85.0 97.8 93.6 REMARK 620 5 HOH C2023 O 105.4 71.5 78.0 167.5 REMARK 620 6 HOH C2025 O 92.8 89.7 167.3 88.9 97.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 17 OG1 REMARK 620 2 THR C 35 OG1 79.6 REMARK 620 3 GDP C 200 O2B 97.6 176.5 REMARK 620 4 AF3 C 201 F3 168.7 89.1 93.8 REMARK 620 5 HOH C2047 O 89.4 93.6 88.4 90.6 REMARK 620 6 HOH C2224 O 90.0 88.2 89.8 90.4 178.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 103 NE2 REMARK 620 2 HOH C2092 O 85.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AF3 C 201 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP C 200 O3B REMARK 620 2 AF3 C 201 F1 88.5 REMARK 620 3 AF3 C 201 F2 96.1 110.6 REMARK 620 4 AF3 C 201 F3 93.1 123.8 125.0 REMARK 620 5 GDP C 200 O2B 41.5 123.7 100.7 56.5 REMARK 620 6 MG C 202 MG 73.8 134.6 112.6 23.7 33.9 REMARK 620 7 HOH C2026 O 106.8 52.3 150.0 73.9 109.3 92.7 REMARK 620 8 HOH C2050 O 171.7 83.3 88.4 90.1 144.4 111.0 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 17 OG1 REMARK 620 2 THR D 35 OG1 80.3 REMARK 620 3 GDP D 200 O2B 95.1 174.2 REMARK 620 4 AF3 D 201 F1 170.3 90.3 94.0 REMARK 620 5 HOH D2046 O 89.4 89.9 86.4 87.9 REMARK 620 6 HOH D2224 O 91.8 94.3 89.5 91.6 175.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 103 NE2 REMARK 620 2 HOH D2091 O 94.9 REMARK 620 3 HOH D2092 O 84.7 117.4 REMARK 620 4 HOH D2093 O 87.5 167.6 74.9 REMARK 620 5 HOH D2143 O 162.7 71.9 91.5 107.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AF3 D 201 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP D 200 O3B REMARK 620 2 AF3 D 201 F1 91.9 REMARK 620 3 AF3 D 201 F2 91.0 120.6 REMARK 620 4 AF3 D 201 F3 97.0 125.3 113.1 REMARK 620 5 GDP D 200 O2B 41.5 55.3 124.6 101.7 REMARK 620 6 MG D 202 MG 73.3 22.0 130.7 115.0 33.8 REMARK 620 7 HOH D2025 O 106.9 76.2 46.6 147.6 110.7 93.0 REMARK 620 8 HOH D2049 O 173.1 89.5 82.5 87.6 142.4 109.4 66.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF3 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF3 D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E96 RELATED DB: PDB REMARK 900 STRUCTURE OF THE RAC/P67PHOX COMPLEX REMARK 900 RELATED ID: 1MH1 RELATED DB: PDB REMARK 900 SMALL G-PROTEIN REMARK 900 RELATED ID: 1HE9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GAP DOMAIN OF THE PSEUDOMONAS AERUGINOSA REMARK 900 EXOS TOXIN DBREF 1HE1 A 95 229 UNP Q51451 Q51451 95 229 DBREF 1HE1 B 95 229 UNP Q51451 Q51451 95 229 DBREF 1HE1 C 1 176 UNP P15154 RAC1_HUMAN 1 176 DBREF 1HE1 D 1 176 UNP P15154 RAC1_HUMAN 1 176 SEQADV 1HE1 ALA A 95 UNP Q51451 MET 1 CLONING ARTIFACT SEQADV 1HE1 ALA B 95 UNP Q51451 MET 1 CLONING ARTIFACT SEQADV 1HE1 PRO C 1 UNP P15154 MET 1 CLONING ARTIFACT SEQADV 1HE1 PRO D 1 UNP P15154 MET 1 CLONING ARTIFACT SEQRES 1 A 135 ALA SER SER ALA VAL VAL PHE LYS GLN MET VAL LEU GLN SEQRES 2 A 135 GLN ALA LEU PRO MET THR LEU LYS GLY LEU ASP LYS ALA SEQRES 3 A 135 SER GLU LEU ALA THR LEU THR PRO GLU GLY LEU ALA ARG SEQRES 4 A 135 GLU HIS SER ARG LEU ALA SER GLY ASP GLY ALA LEU ARG SEQRES 5 A 135 SER LEU SER THR ALA LEU ALA GLY ILE ARG ALA GLY SER SEQRES 6 A 135 GLN VAL GLU GLU SER ARG ILE GLN ALA GLY ARG LEU LEU SEQRES 7 A 135 GLU ARG SER ILE GLY GLY ILE ALA LEU GLN GLN TRP GLY SEQRES 8 A 135 THR THR GLY GLY ALA ALA SER GLN LEU VAL LEU ASP ALA SEQRES 9 A 135 SER PRO GLU LEU ARG ARG GLU ILE THR ASP GLN LEU HIS SEQRES 10 A 135 GLN VAL MET SER GLU VAL ALA LEU LEU ARG GLN ALA VAL SEQRES 11 A 135 GLU SER GLU VAL SER SEQRES 1 B 135 ALA SER SER ALA VAL VAL PHE LYS GLN MET VAL LEU GLN SEQRES 2 B 135 GLN ALA LEU PRO MET THR LEU LYS GLY LEU ASP LYS ALA SEQRES 3 B 135 SER GLU LEU ALA THR LEU THR PRO GLU GLY LEU ALA ARG SEQRES 4 B 135 GLU HIS SER ARG LEU ALA SER GLY ASP GLY ALA LEU ARG SEQRES 5 B 135 SER LEU SER THR ALA LEU ALA GLY ILE ARG ALA GLY SER SEQRES 6 B 135 GLN VAL GLU GLU SER ARG ILE GLN ALA GLY ARG LEU LEU SEQRES 7 B 135 GLU ARG SER ILE GLY GLY ILE ALA LEU GLN GLN TRP GLY SEQRES 8 B 135 THR THR GLY GLY ALA ALA SER GLN LEU VAL LEU ASP ALA SEQRES 9 B 135 SER PRO GLU LEU ARG ARG GLU ILE THR ASP GLN LEU HIS SEQRES 10 B 135 GLN VAL MET SER GLU VAL ALA LEU LEU ARG GLN ALA VAL SEQRES 11 B 135 GLU SER GLU VAL SER SEQRES 1 C 176 PRO GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 C 176 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 C 176 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 C 176 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 C 176 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 C 176 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 C 176 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 C 176 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 C 176 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 C 176 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 C 176 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 C 176 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 C 176 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 C 176 ASP GLU ALA ILE ARG ALA VAL SEQRES 1 D 176 PRO GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 D 176 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 D 176 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 D 176 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 D 176 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 D 176 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 D 176 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 D 176 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 D 176 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 D 176 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 D 176 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 D 176 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 D 176 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 D 176 ASP GLU ALA ILE ARG ALA VAL HET NI A 230 1 HET GDP C 200 28 HET AF3 C 201 4 HET MG C 202 1 HET NI C 203 1 HET NI C 204 2 HET GDP D 200 28 HET AF3 D 201 4 HET MG D 202 1 HET NI D 203 1 HETNAM NI NICKEL (II) ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM AF3 ALUMINUM FLUORIDE HETNAM MG MAGNESIUM ION FORMUL 5 NI 4(NI 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 AF3 2(AL F3) FORMUL 8 MG 2(MG 2+) FORMUL 15 HOH *712(H2 O) HELIX 1 1 SER A 96 ALA A 109 1 14 HELIX 2 2 ALA A 109 ALA A 120 1 12 HELIX 3 3 SER A 121 LEU A 126 5 6 HELIX 4 4 THR A 127 HIS A 135 1 9 HELIX 5 5 GLU A 134 ALA A 139 1 6 HELIX 6 6 GLY A 143 SER A 159 1 17 HELIX 7 7 VAL A 161 GLU A 173 1 13 HELIX 8 8 LEU A 181 GLY A 185 1 5 HELIX 9 9 GLY A 189 ALA A 198 1 10 HELIX 10 10 SER A 199 SER A 229 1 31 HELIX 11 11 ALA B 95 ALA B 109 1 15 HELIX 12 12 ALA B 109 ALA B 120 1 12 HELIX 13 13 SER B 121 LEU B 126 5 6 HELIX 14 14 THR B 127 HIS B 135 1 9 HELIX 15 15 GLU B 134 ALA B 139 1 6 HELIX 16 16 GLY B 143 SER B 159 1 17 HELIX 17 17 VAL B 161 ARG B 174 1 14 HELIX 18 18 LEU B 181 GLY B 185 1 5 HELIX 19 19 GLY B 189 ALA B 198 1 10 HELIX 20 20 SER B 199 SER B 229 1 31 HELIX 21 21 GLY C 15 ASN C 26 1 12 HELIX 22 22 GLN C 61 ASP C 65 5 5 HELIX 23 23 LEU C 67 TYR C 72 5 6 HELIX 24 24 SER C 86 LYS C 96 1 11 HELIX 25 25 LYS C 96 CYS C 105 1 10 HELIX 26 26 LYS C 116 ASP C 121 5 6 HELIX 27 27 ASP C 122 LYS C 132 1 11 HELIX 28 28 THR C 138 ILE C 149 1 12 HELIX 29 29 GLY C 164 ALA C 175 1 12 HELIX 30 30 GLY D 15 ASN D 26 1 12 HELIX 31 31 GLN D 61 ASP D 65 5 5 HELIX 32 32 LEU D 67 TYR D 72 5 6 HELIX 33 33 SER D 86 LYS D 96 1 11 HELIX 34 34 LYS D 96 CYS D 105 1 10 HELIX 35 35 LYS D 116 ARG D 120 5 5 HELIX 36 36 ASP D 122 GLU D 131 1 10 HELIX 37 37 THR D 138 GLY D 150 1 13 HELIX 38 38 GLY D 164 ALA D 175 1 12 SHEET 1 AA 2 SER A 175 ILE A 176 0 SHEET 2 AA 2 ILE A 179 ALA A 180 -1 O ILE A 179 N ILE A 176 SHEET 1 BA 2 SER B 175 ILE B 176 0 SHEET 2 BA 2 ILE B 179 ALA B 180 -1 O ILE B 179 N ILE B 176 SHEET 1 CA 6 PHE C 37 VAL C 46 0 SHEET 2 CA 6 LYS C 49 THR C 58 -1 O LYS C 49 N VAL C 46 SHEET 3 CA 6 GLN C 2 GLY C 10 1 O GLN C 2 N ASN C 52 SHEET 4 CA 6 VAL C 77 SER C 83 1 O VAL C 77 N VAL C 7 SHEET 5 CA 6 ILE C 110 THR C 115 1 O ILE C 111 N ILE C 80 SHEET 6 CA 6 LYS C 153 GLU C 156 1 O LYS C 153 N LEU C 112 SHEET 1 DA 6 PHE D 37 VAL D 46 0 SHEET 2 DA 6 LYS D 49 THR D 58 -1 O LYS D 49 N VAL D 46 SHEET 3 DA 6 GLN D 2 VAL D 9 1 O GLN D 2 N ASN D 52 SHEET 4 DA 6 VAL D 77 SER D 83 1 O VAL D 77 N VAL D 7 SHEET 5 DA 6 ILE D 110 THR D 115 1 O ILE D 111 N ILE D 80 SHEET 6 DA 6 LYS D 153 GLU D 156 1 O LYS D 153 N LEU D 112 LINK ND1 HIS A 211 NI NI A 230 1555 1555 2.14 LINK NI NI A 230 O HOH A2067 1555 1555 2.36 LINK NI NI A 230 O HOH A2115 1555 1555 2.11 LINK NI NI A 230 O HOH A2117 1555 1555 2.09 LINK NI NI A 230 O HOH C2023 1555 4455 2.11 LINK NI NI A 230 O HOH C2025 1555 4455 1.87 LINK OG1 THR C 17 MG MG C 202 1555 1555 2.03 LINK OG1 THR C 35 MG MG C 202 1555 1555 2.14 LINK OD1 ASP C 76 NI A NI C 204 1555 1555 2.08 LINK NE2 HIS C 103 NI NI C 203 1555 1555 2.17 LINK O3B GDP C 200 AL AF3 C 201 1555 1555 2.03 LINK O2B GDP C 200 AL AF3 C 201 1555 1555 3.51 LINK O2B GDP C 200 MG MG C 202 1555 1555 2.03 LINK F3 AF3 C 201 MG MG C 202 1555 1555 1.99 LINK AL AF3 C 201 MG MG C 202 1555 1555 3.46 LINK AL AF3 C 201 O HOH C2026 1555 1555 3.55 LINK AL AF3 C 201 O HOH C2050 1555 1555 2.23 LINK MG MG C 202 O HOH C2047 1555 1555 2.05 LINK MG MG C 202 O HOH C2224 1555 1555 2.22 LINK NI NI C 203 O HOH C2092 1555 1555 2.04 LINK NI B NI C 204 OD1 ASP D 76 1555 1555 2.12 LINK OG1 THR D 17 MG MG D 202 1555 1555 2.06 LINK OG1 THR D 35 MG MG D 202 1555 1555 2.12 LINK NE2 HIS D 103 NI NI D 203 1555 1555 2.07 LINK O3B GDP D 200 AL AF3 D 201 1555 1555 2.04 LINK O2B GDP D 200 AL AF3 D 201 1555 1555 3.51 LINK O2B GDP D 200 MG MG D 202 1555 1555 2.04 LINK F1 AF3 D 201 MG MG D 202 1555 1555 1.91 LINK AL AF3 D 201 MG MG D 202 1555 1555 3.49 LINK AL AF3 D 201 O HOH D2025 1555 1555 3.50 LINK AL AF3 D 201 O HOH D2049 1555 1555 2.21 LINK MG MG D 202 O HOH D2046 1555 1555 2.13 LINK MG MG D 202 O HOH D2224 1555 1555 2.06 LINK NI NI D 203 O HOH D2091 1555 1555 1.99 LINK NI NI D 203 O HOH D2092 1555 1555 1.83 LINK NI NI D 203 O HOH D2093 1555 1555 2.30 LINK NI NI D 203 O HOH D2143 1555 1555 2.21 SITE 1 AC1 6 HIS A 211 HOH A2067 HOH A2115 HOH A2117 SITE 2 AC1 6 HOH C2023 HOH C2025 SITE 1 AC2 6 THR C 17 THR C 35 GDP C 200 AF3 C 201 SITE 2 AC2 6 HOH C2047 HOH C2224 SITE 1 AC3 2 HIS C 103 HOH C2092 SITE 1 AC4 2 ASP C 76 ASP D 76 SITE 1 AC5 6 THR D 17 THR D 35 GDP D 200 AF3 D 201 SITE 2 AC5 6 HOH D2046 HOH D2224 SITE 1 AC6 5 HIS D 103 HOH D2091 HOH D2092 HOH D2093 SITE 2 AC6 5 HOH D2143 SITE 1 AC7 27 ARG A 146 THR A 186 THR A 187 GLY A 188 SITE 2 AC7 27 HOH A2094 ALA C 13 VAL C 14 GLY C 15 SITE 3 AC7 27 LYS C 16 THR C 17 CYS C 18 TYR C 32 SITE 4 AC7 27 LYS C 116 ASP C 118 LEU C 119 SER C 158 SITE 5 AC7 27 ALA C 159 LEU C 160 AF3 C 201 MG C 202 SITE 6 AC7 27 HOH C2006 HOH C2047 HOH C2224 HOH C2225 SITE 7 AC7 27 HOH C2226 HOH C2227 HOH C2228 SITE 1 AC8 15 ARG A 146 GLY C 12 ALA C 13 LYS C 16 SITE 2 AC8 15 THR C 35 THR C 58 ALA C 59 GLY C 60 SITE 3 AC8 15 GLN C 61 GDP C 200 MG C 202 HOH C2026 SITE 4 AC8 15 HOH C2047 HOH C2050 HOH C2224 SITE 1 AC9 25 ARG B 146 THR B 186 THR B 187 GLY B 188 SITE 2 AC9 25 ALA D 13 VAL D 14 GLY D 15 LYS D 16 SITE 3 AC9 25 THR D 17 CYS D 18 TYR D 32 LYS D 116 SITE 4 AC9 25 ASP D 118 LEU D 119 SER D 158 ALA D 159 SITE 5 AC9 25 LEU D 160 AF3 D 201 MG D 202 HOH D2046 SITE 6 AC9 25 HOH D2221 HOH D2223 HOH D2224 HOH D2225 SITE 7 AC9 25 HOH D2226 SITE 1 BC1 13 ARG B 146 GLY D 12 ALA D 13 LYS D 16 SITE 2 BC1 13 THR D 35 GLY D 60 GLN D 61 GDP D 200 SITE 3 BC1 13 MG D 202 HOH D2025 HOH D2046 HOH D2049 SITE 4 BC1 13 HOH D2224 CRYST1 46.025 125.087 136.284 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007338 0.00000 MTRIX1 1 -0.117000 0.849200 0.514900 -49.90880 1 MTRIX2 1 0.860200 -0.172500 0.480000 25.66220 1 MTRIX3 1 0.496400 0.499000 -0.710300 43.16680 1