PDB Short entry for 1HE7 HEADER TRANSFERASE 20-NOV-00 1HE7 TITLE HUMAN NERVE GROWTH FACTOR RECEPTOR TRKA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, SPANS RESIDUES 285-380; COMPND 5 SYNONYM: TRK1 TRANSFORMING TYROSINE KINASE PROTEIN, P140-TRKA, TRK-A; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSFERASE, TRK-RECEPTOR, STRAND-SWAPPING, NERVE GROWTH FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.BANFIELD,A.ROBERTSON,S.ALLEN,J.DANDO,S.TYLER,G.BENNETT,S.BRAIN, AUTHOR 2 G.MASON,P.HOLDEN,A.CLARKE,R.NAYLOR,G.WILCOCK,R.BRADY,D.DAWBARN REVDAT 5 13-DEC-23 1HE7 1 REMARK REVDAT 4 24-JUL-19 1HE7 1 REMARK REVDAT 3 18-MAR-15 1HE7 1 REMARK VERSN HETSYN FORMUL REVDAT 3 2 1 ATOM TER REVDAT 2 24-FEB-09 1HE7 1 VERSN REVDAT 1 02-APR-01 1HE7 0 JRNL AUTH A.G.S.ROBERTSON,M.J.BANFIELD,S.J.ALLEN,J.A.DANDO, JRNL AUTH 2 G.G.F.MASON,S.J.TYLER,G.S.BENNETT,S.D.BRAIN,A.R.CLARKE, JRNL AUTH 3 R.L.NAYLOR,G.K.WILCOCK,R.L.BRADY,D.DAWBARN JRNL TITL IDENTIFICATION AND STRUCTURE OF THE NERVE GROWTH FACTOR JRNL TITL 2 BINDING SITE ON TRKA. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 282 131 2001 JRNL REFN ISSN 0006-291X JRNL PMID 11263982 JRNL DOI 10.1006/BBRC.2001.4462 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.H.ULTSCH,C.WIESMANN,L.C.SIMMONS,J.HENRICH,M.YANG,D.REILLY, REMARK 1 AUTH 2 S.H.BASS,A.M.DE VOS REMARK 1 TITL CRYSTAL STRUCTURE OF THE NEUROTROPHIN-BINDING DOMAIN OF REMARK 1 TITL 2 TRKA, TRKB AND TRKC REMARK 1 REF J.MOL.BIOL. V. 290 149 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 10388563 REMARK 1 DOI 10.1006/JMBI.1999.2816 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.WIESMANN,M.H.ULTSCH,S.H.BASS,A.M.DE VOS REMARK 1 TITL CRYSTAL STRUCTURE OF NERVE GROWTH FACTOR IN COMPLEX WITH THE REMARK 1 TITL 2 LIGAND-BINDING DOMAIN OF THE TRKA RECEPTOR REMARK 1 REF NATURE V. 401 184 1999 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 10490030 REMARK 1 DOI 10.1038/43705 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1109 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 123 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.98700 REMARK 3 B22 (A**2) : -8.98700 REMARK 3 B33 (A**2) : 17.97400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.740 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.650 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.756 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.238 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.152 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 46.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : GOL.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING ATOMS WERE SET TO ZERO REMARK 3 OCCUPANCY AS THEY WERE NOT OBSERVED IN ELECTRON DENSITY, SER A: REMARK 3 304 ATOM: OG GLN A:308 ATOMS: CD OE1 NE2 GLU: THE C-TERMINAL REMARK 3 RESIDUE WAS NOT SEEN IN THE DENSITY MAPS REMARK 4 REMARK 4 1HE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1290005569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1WWA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN + 0.1-0.3M NACL, 0.1M REMARK 280 NA-CITRATE, PH 4.6 - 4.8, PH 4.70 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.90400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.85600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.95200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.90400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.95200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.85600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN DILUTE SOLUTION THE PROTEIN EXISTS AS A REMARK 300 MONOMER (NOSTRAND-SWAPPING) AND IS ACTIVE. THE REMARK 300 PROTEIN IS INACTIVE INTHE DIMERIC FORM SEEN IN REMARK 300 THE CRYSTAL. THE MATRICES FORCONTRUCTING THE DIMER REMARK 300 ARE GIVEN IN REMARK 350 BELOW REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 50.85400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.90400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2007 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 STRUCTURE PRESENTED IS OF A STRAND-SWAPPED DIMER. THE REMARK 400 SECOND MONOMER IS GENERATED THROUGH CRYSTALLOGRAPHIC REMARK 400 SYMMETRY. THIS IS NOT THE BIOLOGICALLY ACTIVE FORM OF THE REMARK 400 MOLECULE. IT IS ACTIVE ONLY IN THE NON-STRAND SWAPPED REMARK 400 STATE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 390 REMARK 465 ILE A 391 REMARK 465 PRO A 392 REMARK 465 ASP A 399 REMARK 465 THR A 400 REMARK 465 ASN A 401 REMARK 465 SER A 402 REMARK 465 THR A 403 REMARK 465 SER A 404 REMARK 465 GLY A 405 REMARK 465 ASP A 406 REMARK 465 PRO A 407 REMARK 465 VAL A 408 REMARK 465 GLU A 409 REMARK 465 LYS A 410 REMARK 465 LYS A 411 REMARK 465 ASP A 412 REMARK 465 GLU A 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 389 CA C O CB CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 304 OG REMARK 480 GLN A 308 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 346 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 334 131.87 -36.33 REMARK 500 ASN A 338 -31.14 70.23 REMARK 500 ASN A 381 106.32 -55.15 REMARK 500 ASN A 381 106.32 -52.14 REMARK 500 GLU A 388 34.85 -87.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1389 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WWA RELATED DB: PDB REMARK 900 NGF BINDING DOMAIN OF HUMAN TRKA RECEPTOR REMARK 900 RELATED ID: 1WWW RELATED DB: PDB REMARK 900 NGF IN COMPLEX WITH DOMAIN 5 OF THE TRKA RECEPTOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS ENTRY IS A SPLICE VARIANT OF THE TRKA_HUMAN (P04629) REMARK 999 SEQUENCE IN WHICH RESIDUES 393-398 ARE NOT PRESENT DBREF 1HE7 A 282 413 UNP P04629 TRKA_HUMAN 282 413 SEQADV 1HE7 SER A 282 UNP P04629 VAL 282 CLONING ARTIFACT SEQADV 1HE7 HIS A 283 UNP P04629 SER 283 CLONING ARTIFACT SEQADV 1HE7 MET A 284 UNP P04629 PHE 284 CLONING ARTIFACT SEQADV 1HE7 A UNP P04629 VAL 393 DELETION SEQADV 1HE7 A UNP P04629 SER 394 DELETION SEQADV 1HE7 A UNP P04629 PHE 395 DELETION SEQADV 1HE7 A UNP P04629 SER 396 DELETION SEQADV 1HE7 A UNP P04629 PRO 397 DELETION SEQADV 1HE7 A UNP P04629 VAL 398 DELETION SEQRES 1 A 126 SER HIS MET PRO ALA SER VAL GLN LEU HIS THR ALA VAL SEQRES 2 A 126 GLU MET HIS HIS TRP CYS ILE PRO PHE SER VAL ASP GLY SEQRES 3 A 126 GLN PRO ALA PRO SER LEU ARG TRP LEU PHE ASN GLY SER SEQRES 4 A 126 VAL LEU ASN GLU THR SER PHE ILE PHE THR GLU PHE LEU SEQRES 5 A 126 GLU PRO ALA ALA ASN GLU THR VAL ARG HIS GLY CYS LEU SEQRES 6 A 126 ARG LEU ASN GLN PRO THR HIS VAL ASN ASN GLY ASN TYR SEQRES 7 A 126 THR LEU LEU ALA ALA ASN PRO PHE GLY GLN ALA SER ALA SEQRES 8 A 126 SER ILE MET ALA ALA PHE MET ASP ASN PRO PHE GLU PHE SEQRES 9 A 126 ASN PRO GLU ASP PRO ILE PRO ASP THR ASN SER THR SER SEQRES 10 A 126 GLY ASP PRO VAL GLU LYS LYS ASP GLU HET GOL A1389 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *32(H2 O) HELIX 1 1 THR A 352 ASN A 356 5 5 SHEET 1 AA 3 HIS A 298 VAL A 305 0 SHEET 2 AA 3 ARG A 342 ASN A 349 -1 O ARG A 342 N VAL A 305 SHEET 3 AA 3 ILE A 328 LEU A 333 -1 O PHE A 329 N ARG A 347 SHEET 1 AB 4 SER A 320 VAL A 321 0 SHEET 2 AB 4 SER A 312 PHE A 317 -1 O PHE A 317 N SER A 320 SHEET 3 AB 4 GLY A 357 ASN A 365 -1 O THR A 360 N LEU A 316 SHEET 4 AB 4 GLY A 368 ALA A 376 -1 O GLY A 368 N ASN A 365 SSBOND 1 CYS A 300 CYS A 345 1555 1555 2.04 CISPEP 1 GLN A 308 PRO A 309 0 0.29 SITE 1 AC1 6 LEU A 313 ARG A 314 TRP A 315 LEU A 322 SITE 2 AC1 6 GLU A 324 HOH A2032 CRYST1 50.854 50.854 107.808 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009276 0.00000