PDB Short entry for 1HJW HEADER SUGAR BINDING PROTEIN 28-FEB-03 1HJW TITLE CRYSTAL STRUCTURE OF HCGP-39 IN COMPLEX WITH CHITIN OCTAMER CAVEAT 1HJW NAG D 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE-3 LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARTILAGE GLYCOPROTEIN-39,GP-39,39 KDA SYNOVIAL PROTEIN, COMPND 5 YKL-40 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: CHONDROCYTE KEYWDS SUGAR BINDING PROTEIN, LECTIN, CHI-LECTIN, CHITINASE, CHONDROCYTE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.HOUSTON,A.D.RECKLIES,J.C.KRUPA,D.M.F.VAN AALTEN REVDAT 5 29-JUL-20 1HJW 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 27-MAR-13 1HJW 1 HEADER CAVEAT KEYWDS REMARK REVDAT 4 2 1 VERSN SEQADV HET HETNAM REVDAT 4 3 1 HETSYN FORMUL LINK SITE REVDAT 4 4 1 HETATM REVDAT 3 24-FEB-09 1HJW 1 VERSN REVDAT 2 26-MAR-04 1HJW 1 JRNL REVDAT 1 11-MAR-03 1HJW 0 JRNL AUTH D.R.HOUSTON,A.D.RECKLIES,J.C.KRUPA,D.M.F.VAN AALTEN JRNL TITL STRUCTURE AND LIGAND-INDUCED CONFORMATIONAL CHANGE OF THE JRNL TITL 2 39-KDA GLYCOPROTEIN FROM HUMAN ARTICULAR CHONDROCYTES JRNL REF J.BIOL.CHEM. V. 278 30206 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12775711 JRNL DOI 10.1074/JBC.M303371200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3159752.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 39382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.600 REMARK 3 FREE R VALUE TEST SET COUNT : 611 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5976 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 93 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.041 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 260 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71000 REMARK 3 B22 (A**2) : -1.47000 REMARK 3 B33 (A**2) : 3.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.670 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.790 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.220 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 51.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : GLYCEROL.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : GLYCEROL.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00639 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HCGP-39 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MAMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE PH 4.6, 25% PEG 4000, 100 MM DTT, PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.74250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.10850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.81450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.10850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.74250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.81450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.74250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.81450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.10850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.81450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.74250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.10850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2149 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2129 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2064 O HOH A 2066 1.93 REMARK 500 OD1 ASP B 301 O HOH B 2106 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 SO4 A 1394 O2 SO4 A 1394 8565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 166 -45.41 -24.07 REMARK 500 PRO A 167 -89.40 -75.65 REMARK 500 SER A 235 59.41 -94.01 REMARK 500 LYS A 289 55.87 33.79 REMARK 500 CYS A 364 -139.66 -100.16 REMARK 500 GLN A 366 -155.52 -63.00 REMARK 500 ALA A 382 145.38 -32.73 REMARK 500 GLU B 36 153.20 -48.84 REMARK 500 LEU B 50 -73.37 -61.13 REMARK 500 SER B 62 -83.59 -83.58 REMARK 500 ASN B 63 -71.94 -36.65 REMARK 500 ASP B 64 1.57 166.12 REMARK 500 TRP B 71 -57.76 -22.64 REMARK 500 MET B 79 -39.76 -38.17 REMARK 500 LEU B 80 -76.38 -64.24 REMARK 500 PHE B 101 -22.29 -176.02 REMARK 500 ARG B 105 -83.51 -48.55 REMARK 500 PRO B 142 109.93 -48.39 REMARK 500 GLU B 164 -27.93 -39.69 REMARK 500 SER B 187 36.75 -76.01 REMARK 500 SER B 188 -28.85 -154.71 REMARK 500 ALA B 211 21.28 -60.98 REMARK 500 SER B 220 56.13 -141.75 REMARK 500 PRO B 231 -79.01 -61.76 REMARK 500 ALA B 251 -36.90 -39.35 REMARK 500 LYS B 289 83.52 33.44 REMARK 500 GLU B 290 97.66 -171.80 REMARK 500 CYS B 364 -124.70 -86.45 REMARK 500 GLN B 366 -155.80 -64.09 REMARK 500 ALA B 382 168.98 -49.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 239 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B2023 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH B2036 DISTANCE = 6.41 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HCGP-39 IN COMPLEX WITH CHITIN TETRAMER REMARK 900 RELATED ID: 1HJX RELATED DB: PDB REMARK 900 LIGAND-INDUCED SIGNALLING AND CONFORMATIONAL CHANGE OF THE 39 KD REMARK 900 GLYCOPROTEIN FROM HUMAN ARTICULAR CHONDROCYTES REMARK 900 RELATED ID: 1LA7 RELATED DB: PDB REMARK 900 A THEORETICAL MODEL OF HUMAN CHITINASE-3 LIKE PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 POLYMORPHISM AT RESIDE 311 DBREF 1HJW A 22 383 UNP P36222 C3L1_HUMAN 22 383 DBREF 1HJW B 22 383 UNP P36222 C3L1_HUMAN 22 383 SEQADV 1HJW ILE A 311 UNP P36222 THR 311 VARIANT SEQADV 1HJW ILE B 311 UNP P36222 THR 311 VARIANT SEQRES 1 A 362 TYR LYS LEU VAL CYS TYR TYR THR SER TRP SER GLN TYR SEQRES 2 A 362 ARG GLU GLY ASP GLY SER CYS PHE PRO ASP ALA LEU ASP SEQRES 3 A 362 ARG PHE LEU CYS THR HIS ILE ILE TYR SER PHE ALA ASN SEQRES 4 A 362 ILE SER ASN ASP HIS ILE ASP THR TRP GLU TRP ASN ASP SEQRES 5 A 362 VAL THR LEU TYR GLY MET LEU ASN THR LEU LYS ASN ARG SEQRES 6 A 362 ASN PRO ASN LEU LYS THR LEU LEU SER VAL GLY GLY TRP SEQRES 7 A 362 ASN PHE GLY SER GLN ARG PHE SER LYS ILE ALA SER ASN SEQRES 8 A 362 THR GLN SER ARG ARG THR PHE ILE LYS SER VAL PRO PRO SEQRES 9 A 362 PHE LEU ARG THR HIS GLY PHE ASP GLY LEU ASP LEU ALA SEQRES 10 A 362 TRP LEU TYR PRO GLY ARG ARG ASP LYS GLN HIS PHE THR SEQRES 11 A 362 THR LEU ILE LYS GLU MET LYS ALA GLU PHE ILE LYS GLU SEQRES 12 A 362 ALA GLN PRO GLY LYS LYS GLN LEU LEU LEU SER ALA ALA SEQRES 13 A 362 LEU SER ALA GLY LYS VAL THR ILE ASP SER SER TYR ASP SEQRES 14 A 362 ILE ALA LYS ILE SER GLN HIS LEU ASP PHE ILE SER ILE SEQRES 15 A 362 MET THR TYR ASP PHE HIS GLY ALA TRP ARG GLY THR THR SEQRES 16 A 362 GLY HIS HIS SER PRO LEU PHE ARG GLY GLN GLU ASP ALA SEQRES 17 A 362 SER PRO ASP ARG PHE SER ASN THR ASP TYR ALA VAL GLY SEQRES 18 A 362 TYR MET LEU ARG LEU GLY ALA PRO ALA SER LYS LEU VAL SEQRES 19 A 362 MET GLY ILE PRO THR PHE GLY ARG SER PHE THR LEU ALA SEQRES 20 A 362 SER SER GLU THR GLY VAL GLY ALA PRO ILE SER GLY PRO SEQRES 21 A 362 GLY ILE PRO GLY ARG PHE THR LYS GLU ALA GLY THR LEU SEQRES 22 A 362 ALA TYR TYR GLU ILE CYS ASP PHE LEU ARG GLY ALA THR SEQRES 23 A 362 VAL HIS ARG ILE LEU GLY GLN GLN VAL PRO TYR ALA THR SEQRES 24 A 362 LYS GLY ASN GLN TRP VAL GLY TYR ASP ASP GLN GLU SER SEQRES 25 A 362 VAL LYS SER LYS VAL GLN TYR LEU LYS ASP ARG GLN LEU SEQRES 26 A 362 ALA GLY ALA MET VAL TRP ALA LEU ASP LEU ASP ASP PHE SEQRES 27 A 362 GLN GLY SER PHE CYS GLY GLN ASP LEU ARG PHE PRO LEU SEQRES 28 A 362 THR ASN ALA ILE LYS ASP ALA LEU ALA ALA THR SEQRES 1 B 362 TYR LYS LEU VAL CYS TYR TYR THR SER TRP SER GLN TYR SEQRES 2 B 362 ARG GLU GLY ASP GLY SER CYS PHE PRO ASP ALA LEU ASP SEQRES 3 B 362 ARG PHE LEU CYS THR HIS ILE ILE TYR SER PHE ALA ASN SEQRES 4 B 362 ILE SER ASN ASP HIS ILE ASP THR TRP GLU TRP ASN ASP SEQRES 5 B 362 VAL THR LEU TYR GLY MET LEU ASN THR LEU LYS ASN ARG SEQRES 6 B 362 ASN PRO ASN LEU LYS THR LEU LEU SER VAL GLY GLY TRP SEQRES 7 B 362 ASN PHE GLY SER GLN ARG PHE SER LYS ILE ALA SER ASN SEQRES 8 B 362 THR GLN SER ARG ARG THR PHE ILE LYS SER VAL PRO PRO SEQRES 9 B 362 PHE LEU ARG THR HIS GLY PHE ASP GLY LEU ASP LEU ALA SEQRES 10 B 362 TRP LEU TYR PRO GLY ARG ARG ASP LYS GLN HIS PHE THR SEQRES 11 B 362 THR LEU ILE LYS GLU MET LYS ALA GLU PHE ILE LYS GLU SEQRES 12 B 362 ALA GLN PRO GLY LYS LYS GLN LEU LEU LEU SER ALA ALA SEQRES 13 B 362 LEU SER ALA GLY LYS VAL THR ILE ASP SER SER TYR ASP SEQRES 14 B 362 ILE ALA LYS ILE SER GLN HIS LEU ASP PHE ILE SER ILE SEQRES 15 B 362 MET THR TYR ASP PHE HIS GLY ALA TRP ARG GLY THR THR SEQRES 16 B 362 GLY HIS HIS SER PRO LEU PHE ARG GLY GLN GLU ASP ALA SEQRES 17 B 362 SER PRO ASP ARG PHE SER ASN THR ASP TYR ALA VAL GLY SEQRES 18 B 362 TYR MET LEU ARG LEU GLY ALA PRO ALA SER LYS LEU VAL SEQRES 19 B 362 MET GLY ILE PRO THR PHE GLY ARG SER PHE THR LEU ALA SEQRES 20 B 362 SER SER GLU THR GLY VAL GLY ALA PRO ILE SER GLY PRO SEQRES 21 B 362 GLY ILE PRO GLY ARG PHE THR LYS GLU ALA GLY THR LEU SEQRES 22 B 362 ALA TYR TYR GLU ILE CYS ASP PHE LEU ARG GLY ALA THR SEQRES 23 B 362 VAL HIS ARG ILE LEU GLY GLN GLN VAL PRO TYR ALA THR SEQRES 24 B 362 LYS GLY ASN GLN TRP VAL GLY TYR ASP ASP GLN GLU SER SEQRES 25 B 362 VAL LYS SER LYS VAL GLN TYR LEU LYS ASP ARG GLN LEU SEQRES 26 B 362 ALA GLY ALA MET VAL TRP ALA LEU ASP LEU ASP ASP PHE SEQRES 27 B 362 GLN GLY SER PHE CYS GLY GLN ASP LEU ARG PHE PRO LEU SEQRES 28 B 362 THR ASN ALA ILE LYS ASP ALA LEU ALA ALA THR MODRES 1HJW ASN A 60 ASN GLYCOSYLATION SITE MODRES 1HJW ASN B 60 ASN GLYCOSYLATION SITE HET NAG C 1 15 HET NAG C 2 14 HET NAG C 3 14 HET NAG C 4 14 HET NAG C 5 14 HET NAG C 6 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 15 HET NAG E 2 14 HET NAG E 3 14 HET NAG E 4 14 HET NAG E 5 14 HET GOL A1386 6 HET GOL A1387 6 HET GOL A1388 6 HET GOL A1389 6 HET SO4 A1392 5 HET SO4 A1394 5 HET SO4 A1396 5 HET GOL A1399 6 HET NAG B1383 14 HET GOL B1384 6 HET GOL B1385 6 HET SO4 B1386 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 14(C8 H15 N O6) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 10 SO4 4(O4 S 2-) FORMUL 18 HOH *337(H2 O) HELIX 1 1 TRP A 31 ARG A 35 5 5 HELIX 2 2 GLU A 36 SER A 40 5 5 HELIX 3 3 PHE A 42 LEU A 46 5 5 HELIX 4 4 ASN A 72 LEU A 83 1 12 HELIX 5 5 GLY A 102 ASN A 112 1 11 HELIX 6 6 ASN A 112 HIS A 130 1 19 HELIX 7 7 GLY A 143 ARG A 145 5 3 HELIX 8 8 ASP A 146 GLN A 166 1 21 HELIX 9 9 GLY A 181 TYR A 189 1 9 HELIX 10 10 ASP A 190 LEU A 198 1 9 HELIX 11 11 GLY A 210 GLY A 214 5 5 HELIX 12 12 GLN A 226 SER A 230 5 5 HELIX 13 13 ASN A 236 GLY A 248 1 13 HELIX 14 14 PRO A 250 SER A 252 5 3 HELIX 15 15 TYR A 296 LEU A 303 1 8 HELIX 16 16 ASP A 330 ARG A 344 1 15 HELIX 17 17 ALA A 353 ASP A 357 5 5 HELIX 18 18 PHE A 370 ALA A 382 1 13 HELIX 19 19 TRP B 31 ARG B 35 5 5 HELIX 20 20 GLU B 36 SER B 40 5 5 HELIX 21 21 PHE B 42 LEU B 46 5 5 HELIX 22 22 ASN B 72 THR B 82 1 11 HELIX 23 23 LEU B 83 ARG B 86 5 4 HELIX 24 24 PHE B 101 ASN B 112 1 12 HELIX 25 25 ASN B 112 GLY B 131 1 20 HELIX 26 26 GLY B 143 ARG B 145 5 3 HELIX 27 27 ASP B 146 ALA B 165 1 20 HELIX 28 28 GLY B 181 SER B 187 1 7 HELIX 29 29 ASP B 190 LEU B 198 1 9 HELIX 30 30 GLN B 226 SER B 230 5 5 HELIX 31 31 ASN B 236 LEU B 247 1 12 HELIX 32 32 PRO B 250 SER B 252 5 3 HELIX 33 33 TYR B 296 LEU B 303 1 8 HELIX 34 34 ASP B 330 ARG B 344 1 15 HELIX 35 35 ALA B 353 ASP B 357 5 5 HELIX 36 36 PHE B 370 ALA B 382 1 13 SHEET 1 AA11 LYS A 23 THR A 29 0 SHEET 2 AA11 GLY A 348 TRP A 352 1 O ALA A 349 N VAL A 25 SHEET 3 AA11 LEU A 254 PRO A 259 1 O MET A 256 N MET A 350 SHEET 4 AA11 PHE A 200 MET A 204 1 O ILE A 201 N VAL A 255 SHEET 5 AA11 LEU A 173 SER A 179 1 O ALA A 176 N SER A 202 SHEET 6 AA11 GLY A 134 ALA A 138 1 O LEU A 135 N SER A 175 SHEET 7 AA11 LYS A 91 GLY A 97 1 O LEU A 94 N ASP A 136 SHEET 8 AA11 HIS A 53 SER A 62 1 O ILE A 54 N LEU A 93 SHEET 9 AA11 LYS A 23 THR A 29 1 O LEU A 24 N HIS A 53 SHEET 10 AA11 GLY A 348 TRP A 352 1 O ALA A 349 N VAL A 25 SHEET 11 AA11 LYS A 23 THR A 29 1 O LYS A 23 N ALA A 349 SHEET 1 AB 8 ILE A 278 PRO A 281 0 SHEET 2 AB 8 PHE A 261 LEU A 267 -1 O THR A 266 N SER A 279 SHEET 3 AB 8 THR A 293 ALA A 295 -1 O LEU A 294 N GLY A 262 SHEET 4 AB 8 PHE A 261 LEU A 267 -1 O GLY A 262 N LEU A 294 SHEET 5 AB 8 THR A 307 ARG A 310 0 SHEET 6 AB 8 PRO A 317 LYS A 321 -1 O TYR A 318 N HIS A 309 SHEET 7 AB 8 GLN A 324 GLY A 327 -1 O GLN A 324 N LYS A 321 SHEET 8 AB 8 PHE A 261 LEU A 267 -1 O ARG A 263 N GLY A 327 SHEET 1 BA10 LYS B 23 THR B 29 0 SHEET 2 BA10 GLY B 348 TRP B 352 1 O ALA B 349 N VAL B 25 SHEET 3 BA10 LEU B 254 PRO B 259 1 O MET B 256 N MET B 350 SHEET 4 BA10 PHE B 200 MET B 204 1 O ILE B 201 N VAL B 255 SHEET 5 BA10 LEU B 173 SER B 179 1 O ALA B 176 N SER B 202 SHEET 6 BA10 GLY B 134 ALA B 138 1 O LEU B 135 N SER B 175 SHEET 7 BA10 LYS B 91 GLY B 97 1 O LEU B 94 N ASP B 136 SHEET 8 BA10 HIS B 53 ILE B 61 1 O ILE B 54 N LEU B 93 SHEET 9 BA10 LYS B 23 THR B 29 1 O CYS B 26 N ILE B 55 SHEET 10 BA10 LYS B 23 THR B 29 0 SHEET 1 BB 8 ILE B 278 PRO B 281 0 SHEET 2 BB 8 PHE B 261 LEU B 267 -1 O THR B 266 N SER B 279 SHEET 3 BB 8 THR B 293 ALA B 295 -1 O LEU B 294 N GLY B 262 SHEET 4 BB 8 PHE B 261 LEU B 267 -1 O GLY B 262 N LEU B 294 SHEET 5 BB 8 THR B 307 ILE B 311 0 SHEET 6 BB 8 VAL B 316 LYS B 321 -1 O VAL B 316 N ILE B 311 SHEET 7 BB 8 GLN B 324 GLY B 327 -1 O GLN B 324 N LYS B 321 SHEET 8 BB 8 PHE B 261 LEU B 267 -1 O ARG B 263 N GLY B 327 SSBOND 1 CYS A 26 CYS A 51 1555 1555 2.06 SSBOND 2 CYS A 300 CYS A 364 1555 1555 2.05 SSBOND 3 CYS B 26 CYS B 51 1555 1555 2.04 SSBOND 4 CYS B 300 CYS B 364 1555 1555 2.05 LINK ND2 ASN A 60 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN B 60 C1 NAG B1383 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.41 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.39 LINK O4 NAG C 4 C1 NAG C 5 1555 1555 1.39 LINK O4 NAG C 5 C1 NAG C 6 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.40 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 LINK O4 NAG E 2 C1 NAG E 3 1555 1555 1.39 LINK O4 NAG E 3 C1 NAG E 4 1555 1555 1.39 LINK O4 NAG E 4 C1 NAG E 5 1555 1555 1.39 CISPEP 1 SER A 57 PHE A 58 0 0.23 CISPEP 2 LEU A 140 TYR A 141 0 -2.67 CISPEP 3 TRP A 352 ALA A 353 0 1.12 CISPEP 4 SER B 57 PHE B 58 0 1.20 CISPEP 5 LEU B 140 TYR B 141 0 -1.88 CISPEP 6 TRP B 352 ALA B 353 0 0.60 CRYST1 109.485 123.629 136.217 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007341 0.00000