PDB Short entry for 1HKV HEADER LYASE 11-MAR-03 1HKV TITLE MYCOBACTERIUM DIAMINOPIMELATE DICARBOXYLASE (LYSA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAP DECARBOXYLASE, MESO-DIAMINOPIMELATE COMPND 5 DECARBOXYLASE, LYSA; COMPND 6 EC: 4.1.1.20; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: COMPLEXED WITH COFACTOR PLP AND PRODUCT COMPND 9 LYSINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3) MET-; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET30B/HIS; SOURCE 9 OTHER_DETAILS: C-TERM 6-HIS TAG KEYWDS LYASE, DECARBOXYLASE, DIAMINOPIMELATE, DAPDC, PLP, LYSINE KEYWDS 2 PATHWAY, MYCBACTERIUM TUBERCULOSIS, LYSINE SYNTHETIC KEYWDS 3 PATHWAY, PYRIDOXAL PHOSPHATE, PSI, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TB, TBSGC EXPDTA X-RAY DIFFRACTION AUTHOR K.GOKULAN,B.RUPP,M.S.PAVELKA JUNIOR,W.R.JACOBS JUNIOR, AUTHOR 2 J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TB) REVDAT 7 24-FEB-09 1HKV 1 VERSN REVDAT 6 03-FEB-05 1HKV 1 KEYWDS REVDAT 5 24-JAN-05 1HKV 1 KEYWDS AUTHOR REMARK REVDAT 4 07-SEP-04 1HKV 1 REMARK REVDAT 3 16-MAY-03 1HKV 1 JRNL REVDAT 2 04-APR-03 1HKV 1 AUTHOR REVDAT 1 20-MAR-03 1HKV 0 JRNL AUTH K.GOKULAN,B.RUPP,M.PAVELKA,W.JACOBS,J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 DIAMINOPIMELATE DECARBOXYLASE, AN ESSENTIAL ENZYME JRNL TITL 3 IN BACTERIAL LYSINE BIOSYNTHESIS JRNL REF J.BIOL.CHEM. V. 278 18588 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12637582 JRNL DOI 10.1074/JBC.M301549200 REMARK 2 REMARK 2 RESOLUTION. 2.6 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6660 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.385 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6838 ; 0.030 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 6377 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9318 ; 1.552 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14706 ; 0.858 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 890 ; 6.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1098 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7731 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1359 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1559 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7919 ; 0.259 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4447 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 1.348 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4428 ; 1.132 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7120 ; 2.042 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2410 ; 2.805 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2198 ; 4.474 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 445 4 REMARK 3 1 B 3 B 445 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. ATOM OXT OF A 447 AND B 447 WERE REMOVED IN REMARK 3 ORDER TO INDICATE THAT THE CHAINS CONTINUE BEYOND RESIDUE 447. REMARK 4 REMARK 4 1HKV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-03. REMARK 100 THE PDBE ID CODE IS EBI-12004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : DOUBLE MONO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 65.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1HKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.9 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 UL HANGING DROPS (2 UL OF REMARK 280 DAPDC 10 MG/ML CONTAINING 5MM OF LYSINE COMBINED REMARK 280 WITH 2 UL OF WELL SOLUTION) WERE EQUILIBRATED AGAINST REMARK 280 500 UL OF WELL SOLUTION (24% PEG-MME 5K, 0.1M MES REMARK 280 BUFFER PH6.3 AND 60 MM AMMONIUM SULFATE). THESE CRYSTALS REMARK 280 WERE SOAKED FOR 3 HRS IN IN MOTHER LIQUOR CONTAINING 0.2 REMARK 280 MM PLP. THE CRYSTALS ARE DISTINCTLY YELLOW. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.12650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.72600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.72600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.56325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.72600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.72600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 178.68975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.72600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.72600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.56325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.72600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.72600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 178.68975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 119.12650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CONVERTS MESOO-2,6-DIAMINOHEPTANEDIOATE TO L-LYSINE AND REMARK 400 CO(2). REQUIRES PYRIDOXAL PHOSPHATE AS A COFACTOR. REMARK 400 MEMBER OF THE LYSINE BIOSYNTHESIS PATHWAY AT THE LAST STEP REMARK 400 OF LYSINE SYNTHESIS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 MET B 1 REMARK 465 HIS B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 20 CD GLU A 20 OE1 0.070 REMARK 500 ASP A 203 CB ASP A 203 CG 0.142 REMARK 500 VAL A 324 CB VAL A 324 CG1 -0.126 REMARK 500 ASP A 336 CB ASP A 336 CG -0.161 REMARK 500 TRP A 386 CG TRP A 386 CD1 0.095 REMARK 500 GLU B 143 CD GLU B 143 OE1 0.076 REMARK 500 GLU B 241 CD GLU B 241 OE1 -0.068 REMARK 500 GLU B 245 CB GLU B 245 CG 0.122 REMARK 500 GLU B 245 CG GLU B 245 CD 0.114 REMARK 500 GLU B 274 CD GLU B 274 OE2 0.073 REMARK 500 ASP B 336 CB ASP B 336 CG -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 203 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 LEU A 259 O - C - N ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 369 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 389 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 46 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 137 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 146 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 180 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 220 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 389 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 440 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -30.95 -146.17 REMARK 500 PRO A 13 150.83 -49.38 REMARK 500 ASN A 15 45.39 -99.45 REMARK 500 ASP A 19 152.43 -43.42 REMARK 500 PHE A 74 131.33 -177.84 REMARK 500 ASN A 117 49.12 -147.20 REMARK 500 THR A 170 -111.19 38.20 REMARK 500 ARG A 206 118.27 -161.43 REMARK 500 PRO A 244 84.71 -61.45 REMARK 500 GLU A 245 -52.06 -166.24 REMARK 500 ALA A 289 12.93 -57.38 REMARK 500 ASN A 342 83.97 -159.43 REMARK 500 ASP A 379 74.90 -68.66 REMARK 500 TYR A 405 -15.27 84.56 REMARK 500 LEU B 4 20.14 -74.02 REMARK 500 ASN B 15 41.15 -101.17 REMARK 500 ASP B 19 161.51 -38.59 REMARK 500 PHE B 74 130.72 -174.32 REMARK 500 SER B 105 60.71 23.15 REMARK 500 ASN B 117 53.81 -155.32 REMARK 500 THR B 170 -98.44 53.37 REMARK 500 ASP B 180 77.10 -106.99 REMARK 500 GLU B 245 -40.19 158.43 REMARK 500 ALA B 248 28.43 -69.78 REMARK 500 ASP B 268 67.38 -117.86 REMARK 500 ALA B 289 -26.83 -38.66 REMARK 500 THR B 327 -37.20 -135.42 REMARK 500 THR B 385 -152.97 -132.53 REMARK 500 VAL B 446 -101.17 -112.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 132 HIS A 133 148.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 259 15.77 REMARK 500 ALA A 289 -10.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 259 24.5 L L OUTSIDE RANGE REMARK 500 THR A 288 24.3 L L OUTSIDE RANGE REMARK 500 ALA A 289 22.2 L L OUTSIDE RANGE REMARK 500 ARG B 447 17.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HKW RELATED DB: PDB REMARK 900 MYCOBACTERIUM DIAMINOPIMELATE DICARBOXYLASE (LYSA) REMARK 900 RELATED ID: RV1293 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RV1293, INITIAL METHIONINE FROM EXPRESSION CONSTRUCT DBREF 1HKV A 1 1 PDB 1HKV 1HKV 1 1 DBREF 1HKV A 2 447 UNP P31848 DCDA_MYCTU 2 447 DBREF 1HKV A 448 453 PDB 1HKV 1HKV 448 453 DBREF 1HKV B 1 1 PDB 1HKV 1HKV 1 1 DBREF 1HKV B 2 447 UNP P31848 DCDA_MYCTU 2 447 DBREF 1HKV B 448 453 PDB 1HKV 1HKV 448 453 SEQRES 1 A 453 MET ASN GLU LEU LEU HIS LEU ALA PRO ASN VAL TRP PRO SEQRES 2 A 453 ARG ASN THR THR ARG ASP GLU VAL GLY VAL VAL CYS ILE SEQRES 3 A 453 ALA GLY ILE PRO LEU THR GLN LEU ALA GLN GLU TYR GLY SEQRES 4 A 453 THR PRO LEU PHE VAL ILE ASP GLU ASP ASP PHE ARG SER SEQRES 5 A 453 ARG CYS ARG GLU THR ALA ALA ALA PHE GLY SER GLY ALA SEQRES 6 A 453 ASN VAL HIS TYR ALA ALA LYS ALA PHE LEU CYS SER GLU SEQRES 7 A 453 VAL ALA ARG TRP ILE SER GLU GLU GLY LEU CYS LEU ASP SEQRES 8 A 453 VAL CYS THR GLY GLY GLU LEU ALA VAL ALA LEU HIS ALA SEQRES 9 A 453 SER PHE PRO PRO GLU ARG ILE THR LEU HIS GLY ASN ASN SEQRES 10 A 453 LYS SER VAL SER GLU LEU THR ALA ALA VAL LYS ALA GLY SEQRES 11 A 453 VAL GLY HIS ILE VAL VAL ASP SER MET THR GLU ILE GLU SEQRES 12 A 453 ARG LEU ASP ALA ILE ALA GLY GLU ALA GLY ILE VAL GLN SEQRES 13 A 453 ASP VAL LEU VAL ARG LEU THR VAL GLY VAL GLU ALA HIS SEQRES 14 A 453 THR HIS GLU PHE ILE SER THR ALA HIS GLU ASP GLN LYS SEQRES 15 A 453 PHE GLY LEU SER VAL ALA SER GLY ALA ALA MET ALA ALA SEQRES 16 A 453 VAL ARG ARG VAL PHE ALA THR ASP HIS LEU ARG LEU VAL SEQRES 17 A 453 GLY LEU HIS SER HIS ILE GLY SER GLN ILE PHE ASP VAL SEQRES 18 A 453 ASP GLY PHE GLU LEU ALA ALA HIS ARG VAL ILE GLY LEU SEQRES 19 A 453 LEU ARG ASP VAL VAL GLY GLU PHE GLY PRO GLU LYS THR SEQRES 20 A 453 ALA GLN ILE ALA THR VAL ASP LEU GLY GLY GLY LEU GLY SEQRES 21 A 453 ILE SER TYR LEU PRO SER ASP ASP PRO PRO PRO ILE ALA SEQRES 22 A 453 GLU LEU ALA ALA LYS LEU GLY THR ILE VAL SER ASP GLU SEQRES 23 A 453 SER THR ALA VAL GLY LEU PRO THR PRO LYS LEU VAL VAL SEQRES 24 A 453 GLU PRO GLY ARG ALA ILE ALA GLY PRO GLY THR ILE THR SEQRES 25 A 453 LEU TYR GLU VAL GLY THR VAL LYS ASP VAL ASP VAL SER SEQRES 26 A 453 ALA THR ALA HIS ARG ARG TYR VAL SER VAL ASP GLY GLY SEQRES 27 A 453 MET SER ASP ASN ILE ARG THR ALA LEU TYR GLY ALA GLN SEQRES 28 A 453 TYR ASP VAL ARG LEU VAL SER ARG VAL SER ASP ALA PRO SEQRES 29 A 453 PRO VAL PRO ALA ARG LEU VAL GLY LYS HIS CYS GLU SER SEQRES 30 A 453 GLY ASP ILE ILE VAL ARG ASP THR TRP VAL PRO ASP ASP SEQRES 31 A 453 ILE ARG PRO GLY ASP LEU VAL ALA VAL ALA ALA THR GLY SEQRES 32 A 453 ALA TYR CYS TYR SER LEU SER SER ARG TYR ASN MET VAL SEQRES 33 A 453 GLY ARG PRO ALA VAL VAL ALA VAL HIS ALA GLY ASN ALA SEQRES 34 A 453 ARG LEU VAL LEU ARG ARG GLU THR VAL ASP ASP LEU LEU SEQRES 35 A 453 SER LEU GLU VAL ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 453 MET ASN GLU LEU LEU HIS LEU ALA PRO ASN VAL TRP PRO SEQRES 2 B 453 ARG ASN THR THR ARG ASP GLU VAL GLY VAL VAL CYS ILE SEQRES 3 B 453 ALA GLY ILE PRO LEU THR GLN LEU ALA GLN GLU TYR GLY SEQRES 4 B 453 THR PRO LEU PHE VAL ILE ASP GLU ASP ASP PHE ARG SER SEQRES 5 B 453 ARG CYS ARG GLU THR ALA ALA ALA PHE GLY SER GLY ALA SEQRES 6 B 453 ASN VAL HIS TYR ALA ALA LYS ALA PHE LEU CYS SER GLU SEQRES 7 B 453 VAL ALA ARG TRP ILE SER GLU GLU GLY LEU CYS LEU ASP SEQRES 8 B 453 VAL CYS THR GLY GLY GLU LEU ALA VAL ALA LEU HIS ALA SEQRES 9 B 453 SER PHE PRO PRO GLU ARG ILE THR LEU HIS GLY ASN ASN SEQRES 10 B 453 LYS SER VAL SER GLU LEU THR ALA ALA VAL LYS ALA GLY SEQRES 11 B 453 VAL GLY HIS ILE VAL VAL ASP SER MET THR GLU ILE GLU SEQRES 12 B 453 ARG LEU ASP ALA ILE ALA GLY GLU ALA GLY ILE VAL GLN SEQRES 13 B 453 ASP VAL LEU VAL ARG LEU THR VAL GLY VAL GLU ALA HIS SEQRES 14 B 453 THR HIS GLU PHE ILE SER THR ALA HIS GLU ASP GLN LYS SEQRES 15 B 453 PHE GLY LEU SER VAL ALA SER GLY ALA ALA MET ALA ALA SEQRES 16 B 453 VAL ARG ARG VAL PHE ALA THR ASP HIS LEU ARG LEU VAL SEQRES 17 B 453 GLY LEU HIS SER HIS ILE GLY SER GLN ILE PHE ASP VAL SEQRES 18 B 453 ASP GLY PHE GLU LEU ALA ALA HIS ARG VAL ILE GLY LEU SEQRES 19 B 453 LEU ARG ASP VAL VAL GLY GLU PHE GLY PRO GLU LYS THR SEQRES 20 B 453 ALA GLN ILE ALA THR VAL ASP LEU GLY GLY GLY LEU GLY SEQRES 21 B 453 ILE SER TYR LEU PRO SER ASP ASP PRO PRO PRO ILE ALA SEQRES 22 B 453 GLU LEU ALA ALA LYS LEU GLY THR ILE VAL SER ASP GLU SEQRES 23 B 453 SER THR ALA VAL GLY LEU PRO THR PRO LYS LEU VAL VAL SEQRES 24 B 453 GLU PRO GLY ARG ALA ILE ALA GLY PRO GLY THR ILE THR SEQRES 25 B 453 LEU TYR GLU VAL GLY THR VAL LYS ASP VAL ASP VAL SER SEQRES 26 B 453 ALA THR ALA HIS ARG ARG TYR VAL SER VAL ASP GLY GLY SEQRES 27 B 453 MET SER ASP ASN ILE ARG THR ALA LEU TYR GLY ALA GLN SEQRES 28 B 453 TYR ASP VAL ARG LEU VAL SER ARG VAL SER ASP ALA PRO SEQRES 29 B 453 PRO VAL PRO ALA ARG LEU VAL GLY LYS HIS CYS GLU SER SEQRES 30 B 453 GLY ASP ILE ILE VAL ARG ASP THR TRP VAL PRO ASP ASP SEQRES 31 B 453 ILE ARG PRO GLY ASP LEU VAL ALA VAL ALA ALA THR GLY SEQRES 32 B 453 ALA TYR CYS TYR SER LEU SER SER ARG TYR ASN MET VAL SEQRES 33 B 453 GLY ARG PRO ALA VAL VAL ALA VAL HIS ALA GLY ASN ALA SEQRES 34 B 453 ARG LEU VAL LEU ARG ARG GLU THR VAL ASP ASP LEU LEU SEQRES 35 B 453 SER LEU GLU VAL ARG HIS HIS HIS HIS HIS HIS HET LYS A 501 10 HET LYS B 501 10 HET PLP A 500 15 HET PLP B 500 15 HETNAM LYS LYSINE HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 COMPLEX FORMUL 3 LYS 2(C6 H15 N2 O2 1+) FORMUL 5 PLP 2(C8 H10 N O6 P) FORMUL 7 HOH *236(H2 O1) HELIX 1 1 LEU A 31 GLY A 39 1 9 HELIX 2 2 GLU A 47 PHE A 61 1 15 HELIX 3 3 SER A 63 ASN A 66 5 4 HELIX 4 4 LYS A 72 PHE A 74 5 3 HELIX 5 5 CYS A 76 GLY A 87 1 12 HELIX 6 6 THR A 94 ALA A 104 1 11 HELIX 7 7 PRO A 107 GLU A 109 5 3 HELIX 8 8 SER A 119 GLY A 130 1 12 HELIX 9 9 SER A 138 GLY A 153 1 16 HELIX 10 10 GLY A 190 THR A 202 1 13 HELIX 11 11 VAL A 221 GLY A 243 1 23 HELIX 12 12 PRO A 271 ALA A 289 1 19 HELIX 13 13 GLY A 302 GLY A 307 1 6 HELIX 14 14 ILE A 343 GLY A 349 1 7 HELIX 15 15 CYS A 406 SER A 410 5 5 HELIX 16 16 ARG A 412 VAL A 416 5 5 HELIX 17 17 THR A 437 SER A 443 1 7 HELIX 18 18 LEU B 31 GLY B 39 1 9 HELIX 19 19 GLU B 47 PHE B 61 1 15 HELIX 20 20 SER B 63 ASN B 66 5 4 HELIX 21 21 LYS B 72 PHE B 74 5 3 HELIX 22 22 CYS B 76 GLY B 87 1 12 HELIX 23 23 THR B 94 ALA B 104 1 11 HELIX 24 24 PRO B 107 GLU B 109 5 3 HELIX 25 25 SER B 119 GLY B 130 1 12 HELIX 26 26 SER B 138 ALA B 152 1 15 HELIX 27 27 GLY B 190 THR B 202 1 13 HELIX 28 28 VAL B 221 GLY B 243 1 23 HELIX 29 29 PRO B 271 ALA B 289 1 19 HELIX 30 30 GLY B 302 GLY B 307 1 6 HELIX 31 31 ILE B 343 GLY B 349 1 7 HELIX 32 32 ARG B 412 VAL B 416 5 5 HELIX 33 33 THR B 437 SER B 443 1 7 SHEET 1 AA 3 THR A 16 ARG A 18 0 SHEET 2 AA 3 VAL A 24 ILE A 26 -1 O CYS A 25 N THR A 17 SHEET 3 AA 3 ILE A 29 PRO A 30 -1 O ILE A 29 N ILE A 26 SHEET 1 AB 6 VAL A 354 LEU A 356 0 SHEET 2 AB 6 LEU A 396 VAL A 399 -1 O ALA A 398 N ARG A 355 SHEET 3 AB 6 THR A 310 GLU A 315 -1 O THR A 312 N VAL A 399 SHEET 4 AB 6 LEU A 42 ASP A 46 -1 O LEU A 42 N LEU A 313 SHEET 5 AB 6 ALA A 420 HIS A 425 1 O ALA A 420 N PHE A 43 SHEET 6 AB 6 ASN A 428 LEU A 433 -1 O ASN A 428 N HIS A 425 SHEET 1 AC 3 HIS A 68 ALA A 70 0 SHEET 2 AC 3 CYS A 89 VAL A 92 1 O CYS A 89 N TYR A 69 SHEET 3 AC 3 ILE A 111 LEU A 113 1 O THR A 112 N VAL A 92 SHEET 1 AD 5 ILE A 134 VAL A 136 0 SHEET 2 AD 5 GLN A 156 THR A 163 1 O ASP A 157 N ILE A 134 SHEET 3 AD 5 LEU A 205 HIS A 211 1 O ARG A 206 N VAL A 158 SHEET 4 AD 5 THR A 252 ASP A 254 1 O THR A 252 N LEU A 210 SHEET 5 AD 5 LYS A 296 VAL A 298 1 O LYS A 296 N VAL A 253 SHEET 1 AE 3 ILE A 134 VAL A 136 0 SHEET 2 AE 3 GLN A 156 THR A 163 1 O ASP A 157 N ILE A 134 SHEET 3 AE 3 LEU A 185 SER A 186 1 O LEU A 185 N THR A 163 SHEET 1 AF 3 GLU A 172 SER A 175 0 SHEET 2 AF 3 VAL A 166 THR A 170 -1 O GLU A 167 N ILE A 174 SHEET 3 AF 3 GLY A 215 ILE A 218 1 N SER A 216 O ALA A 168 SHEET 1 AG 4 THR A 318 ASP A 323 0 SHEET 2 AG 4 HIS A 329 SER A 334 -1 O ARG A 330 N VAL A 322 SHEET 3 AG 4 PRO A 365 VAL A 371 1 O PRO A 367 N ARG A 331 SHEET 4 AG 4 ILE A 380 PRO A 388 -1 N ILE A 381 O LEU A 370 SHEET 1 BA 3 THR B 16 ARG B 18 0 SHEET 2 BA 3 VAL B 24 ILE B 26 -1 O CYS B 25 N THR B 17 SHEET 3 BA 3 ILE B 29 PRO B 30 -1 O ILE B 29 N ILE B 26 SHEET 1 BB 6 VAL B 354 LEU B 356 0 SHEET 2 BB 6 LEU B 396 ALA B 400 -1 O ALA B 398 N ARG B 355 SHEET 3 BB 6 THR B 310 GLU B 315 -1 O THR B 312 N VAL B 399 SHEET 4 BB 6 LEU B 42 ASP B 46 -1 O LEU B 42 N LEU B 313 SHEET 5 BB 6 ALA B 420 HIS B 425 1 O ALA B 420 N PHE B 43 SHEET 6 BB 6 ASN B 428 LEU B 433 -1 O ASN B 428 N HIS B 425 SHEET 1 BC 8 HIS B 68 ALA B 70 0 SHEET 2 BC 8 CYS B 89 VAL B 92 1 O CYS B 89 N TYR B 69 SHEET 3 BC 8 ILE B 111 LEU B 113 1 O THR B 112 N VAL B 92 SHEET 4 BC 8 GLY B 132 VAL B 136 1 O HIS B 133 N LEU B 113 SHEET 5 BC 8 GLN B 156 THR B 163 1 O ASP B 157 N ILE B 134 SHEET 6 BC 8 LEU B 205 HIS B 211 1 O ARG B 206 N VAL B 158 SHEET 7 BC 8 THR B 252 ASP B 254 1 O THR B 252 N LEU B 210 SHEET 8 BC 8 LYS B 296 VAL B 298 1 O LYS B 296 N VAL B 253 SHEET 1 BD 6 HIS B 68 ALA B 70 0 SHEET 2 BD 6 CYS B 89 VAL B 92 1 O CYS B 89 N TYR B 69 SHEET 3 BD 6 ILE B 111 LEU B 113 1 O THR B 112 N VAL B 92 SHEET 4 BD 6 GLY B 132 VAL B 136 1 O HIS B 133 N LEU B 113 SHEET 5 BD 6 GLN B 156 THR B 163 1 O ASP B 157 N ILE B 134 SHEET 6 BD 6 LEU B 185 SER B 186 1 O LEU B 185 N THR B 163 SHEET 1 BE 3 GLU B 172 SER B 175 0 SHEET 2 BE 3 VAL B 166 THR B 170 -1 O GLU B 167 N ILE B 174 SHEET 3 BE 3 GLY B 215 ILE B 218 1 N SER B 216 O ALA B 168 SHEET 1 BF 4 THR B 318 ASP B 323 0 SHEET 2 BF 4 HIS B 329 SER B 334 -1 O ARG B 330 N VAL B 322 SHEET 3 BF 4 PRO B 365 VAL B 371 1 O PRO B 367 N ARG B 331 SHEET 4 BF 4 ILE B 380 PRO B 388 -1 N ILE B 381 O LEU B 370 SSBOND 1 CYS A 93 CYS B 375 1555 1555 2.09 SSBOND 2 CYS A 375 CYS B 93 1555 1555 2.08 LINK NZ LYS A 72 C4A PLP A 500 1555 1555 1.30 LINK NZ LYS B 72 C4A PLP B 500 1555 1555 1.27 CISPEP 1 THR A 40 PRO A 41 0 -1.93 CISPEP 2 THR B 40 PRO B 41 0 -2.38 SITE 1 AC1 5 LYS A 72 SER A 216 ARG A 303 ARG A 344 SITE 2 AC1 5 GLU B 376 SITE 1 AC2 9 GLU A 376 SER A 377 TYR A 413 LYS B 72 SITE 2 AC2 9 HIS B 213 SER B 216 ARG B 303 TYR B 348 SITE 3 AC2 9 TYR B 405 SITE 1 AC3 13 ALA A 70 LYS A 72 ARG A 161 HIS A 213 SITE 2 AC3 13 GLY A 257 GLY A 258 GLU A 300 GLY A 302 SITE 3 AC3 13 ARG A 303 TYR A 405 HOH A2064 HOH A2109 SITE 4 AC3 13 CYS B 375 SITE 1 AC4 12 CYS A 375 LYS B 72 HIS B 213 SER B 216 SITE 2 AC4 12 GLY B 257 GLY B 258 GLU B 300 GLY B 302 SITE 3 AC4 12 ARG B 303 TYR B 405 HOH B2126 HOH B2127 CRYST1 111.452 111.452 238.253 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004197 0.00000 MTRIX1 1 -0.275000 -0.716000 -0.641600 230.89999 1 MTRIX2 1 -0.716700 -0.292100 0.633200 -72.31000 1 MTRIX3 1 -0.640800 0.634000 -0.432900 341.79999 1