PDB Short entry for 1HMC HEADER MACROPHAGE COLONY STIMULATING FACTOR 22-DEC-93 1HMC TITLE THREE-DIMENSIONAL STRUCTURE OF DIMERIC HUMAN RECOMBINANT MACROPHAGE TITLE 2 COLONY STIMULATING FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN MACROPHAGE COLONY STIMULATING FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS MACROPHAGE COLONY STIMULATING FACTOR EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN A, B AUTHOR A.BOHM,J.PANDIT,J.JANCARIK,R.HALENBECK,K.KOTHS,S.-H.KIM REVDAT 5 07-FEB-24 1HMC 1 REMARK REVDAT 4 01-SEP-09 1HMC 1 HELIX SHEET REVDAT 3 24-FEB-09 1HMC 1 VERSN REVDAT 2 01-APR-03 1HMC 1 JRNL REVDAT 1 30-APR-94 1HMC 0 JRNL AUTH J.PANDIT,A.BOHM,J.JANCARIK,R.HALENBECK,K.KOTHS,S.H.KIM JRNL TITL THREE-DIMENSIONAL STRUCTURE OF DIMERIC HUMAN RECOMBINANT JRNL TITL 2 MACROPHAGE COLONY-STIMULATING FACTOR. JRNL REF SCIENCE V. 258 1358 1992 JRNL REFN ISSN 0036-8075 JRNL PMID 1455231 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 3.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE SEQUENCE THAT WAS CRYSTALLIZED RAN FROM RESIDUE 4 REMARK 3 THROUGH RESIDUE 158. NEITHER OF THE TWO TERMINI COULD BE REMARK 3 LOCATED IN THE ELECTRON DENSITY MAPS. THE TWO REMARK 3 CRYSTALLOGRAPHICALLY UNIQUE MONOMERS HAVE BEEN ASSIGNED REMARK 3 CHAIN INDICATORS *A* AND *B*. REMARK 4 REMARK 4 1HMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.68500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.68500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN A WHEN APPLIED TO REMARK 300 CHAIN B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 147 REMARK 465 SER B 148 REMARK 465 GLN B 149 REMARK 465 GLY B 150 REMARK 465 HIS B 151 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: :CSF1_HUMAN REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB ATOM RECORDS REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 ASP 183 GLY A 150 REMARK 999 VAL 184 HIS A 151 DBREF 1HMC A 4 149 UNP P09603 CSF1_HUMAN 36 181 DBREF 1HMC B 4 149 UNP P09603 CSF1_HUMAN 36 181 SEQRES 1 A 148 SER GLU TYR CYS SER HIS MET ILE GLY SER GLY HIS LEU SEQRES 2 A 148 GLN SER LEU GLN ARG LEU ILE ASP SER GLN MET GLU THR SEQRES 3 A 148 SER CYS GLN ILE THR PHE GLU PHE VAL ASP GLN GLU GLN SEQRES 4 A 148 LEU LYS ASP PRO VAL CYS TYR LEU LYS LYS ALA PHE LEU SEQRES 5 A 148 LEU VAL GLN ASP ILE MET GLU ASP THR MET ARG PHE ARG SEQRES 6 A 148 ASP ASN THR PRO ASN ALA ILE ALA ILE VAL GLN LEU GLN SEQRES 7 A 148 GLU LEU SER LEU ARG LEU LYS SER CYS PHE THR LYS ASP SEQRES 8 A 148 TYR GLU GLU HIS ASP LYS ALA CYS VAL ARG THR PHE TYR SEQRES 9 A 148 GLU THR PRO LEU GLN LEU LEU GLU LYS VAL LYS ASN VAL SEQRES 10 A 148 PHE ASN GLU THR LYS ASN LEU LEU ASP LYS ASP TRP ASN SEQRES 11 A 148 ILE PHE SER LYS ASN CYS ASN ASN SER PHE ALA GLU CYS SEQRES 12 A 148 SER SER GLN GLY HIS SEQRES 1 B 148 SER GLU TYR CYS SER HIS MET ILE GLY SER GLY HIS LEU SEQRES 2 B 148 GLN SER LEU GLN ARG LEU ILE ASP SER GLN MET GLU THR SEQRES 3 B 148 SER CYS GLN ILE THR PHE GLU PHE VAL ASP GLN GLU GLN SEQRES 4 B 148 LEU LYS ASP PRO VAL CYS TYR LEU LYS LYS ALA PHE LEU SEQRES 5 B 148 LEU VAL GLN ASP ILE MET GLU ASP THR MET ARG PHE ARG SEQRES 6 B 148 ASP ASN THR PRO ASN ALA ILE ALA ILE VAL GLN LEU GLN SEQRES 7 B 148 GLU LEU SER LEU ARG LEU LYS SER CYS PHE THR LYS ASP SEQRES 8 B 148 TYR GLU GLU HIS ASP LYS ALA CYS VAL ARG THR PHE TYR SEQRES 9 B 148 GLU THR PRO LEU GLN LEU LEU GLU LYS VAL LYS ASN VAL SEQRES 10 B 148 PHE ASN GLU THR LYS ASN LEU LEU ASP LYS ASP TRP ASN SEQRES 11 B 148 ILE PHE SER LYS ASN CYS ASN ASN SER PHE ALA GLU CYS SEQRES 12 B 148 SER SER GLN GLY HIS HELIX 1 AH1 TYR A 6 MET A 10 1 5 HELIX 2 AHA SER A 13 ASP A 24 1 12 HELIX 3 AHB PRO A 46 ASP A 63 1 18 HELIX 4 AHC PRO A 72 LYS A 88 1 17 HELIX 5 AHD PRO A 110 LYS A 130 1 21 HELIX 6 AH2 ASN A 140 ALA A 144 1 5 HELIX 7 BH1 GLU B 5 HIS B 9 1 5 HELIX 8 BHA SER B 13 ILE B 23 1 11 HELIX 9 BHB PRO B 46 ASP B 63 1 18 HELIX 10 BHC PRO B 72 LYS B 88 1 17 HELIX 11 BHD PRO B 110 LEU B 127 1 18 SHEET 1 AS1 2 ILE A 33 VAL A 38 0 SHEET 2 AS1 2 VAL A 103 GLU A 108 -1 SHEET 1 BS1 2 ILE B 33 VAL B 38 0 SHEET 2 BS1 2 VAL B 103 GLU B 108 -1 CRYST1 33.370 64.750 157.870 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029967 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006334 0.00000 MTRIX1 1 -0.925055 -0.377203 -0.043564 140.33920 1 MTRIX2 1 -0.378219 0.905231 0.193665 -8.14815 1 MTRIX3 1 -0.033617 0.195637 -0.980100 355.75006 1