PDB Short entry for 1HOU HEADER IMMUNE SYSTEM 26-FEB-99 1HOU TITLE THEORETICAL MODEL OF THE UNMUTATED, MAJOR CANONICAL TITLE 2 ANTIBODY SPECIFIC FOR HAEMOPHILUS INFLUENZAE TYPE B TITLE 3 CAPSULAR POLYSACCHARIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (IG); COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: ANTIGEN BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FRANEWORK REGION (FR) 1: A 1 - A 23 COMPND 7 COMPLEMENTARITY DETERMINING REGION (CDR) 1 A 24 - A 34 FR2 COMPND 8 A 35 - A 49 CDR2 A 50 - A 65 FR3 A 66 - A 88 CDR3 A 89 - A COMPND 9 97 FR4 A 98 - A 106; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN (IG); COMPND 12 CHAIN: H; COMPND 13 FRAGMENT: ANTIGEN BINDING DOMAIN; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: FRANEWORK REGION (FR) 1: A 1 - A 30 COMPND 16 COMPLEMENTARITY DETERMINING REGION (CDR) 1 A 31 - A 35 FR2 COMPND 17 A 36 - A 49 CDR2 A 50 - A 65 FR3 A 66 - A 94 CDR3 A 95 - A COMPND 18 102 FR4 A 102 - A 113 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 TISSUE: BLOOD; SOURCE 5 CELL: B-CELL; SOURCE 6 GENE: VK A2A, JK1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TOP-10-TET; SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: PERIPLASMIC SPACE; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PHAGMIDE EXPRESSION; SOURCE 12 EXPRESSION_SYSTEM_GENE: IMMUNOGLOBULIN; SOURCE 13 OTHER_DETAILS: HEALTHY ADULT HUMAN MALE. PREDICTED GERM- SOURCE 14 LINE OF A KNOWN REARRANGED ANTIBODY; SOURCE 15 MOL_ID: 2; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 TISSUE: BLOOD; SOURCE 19 CELL: B-CELL; SOURCE 20 GENE: VH3-23, JH6B1; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: TOP-10-TET; SOURCE 24 EXPRESSION_SYSTEM_CELLULAR_LOCATION: PERIPLASMATIC SPACE; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PHAGEMID EXPRESSION; SOURCE 26 EXPRESSION_SYSTEM_GENE: IMMUNOGLOBULIN; SOURCE 27 OTHER_DETAILS: HEALTHY ADULT HUMAN MALE. PREDICTED GERM- SOURCE 28 LINE OF A KNOWN REARRANGED ANTIBODY KEYWDS IMMUNOGLOBULIN FV, ANTI HAEMOPHILUS INFLUENZAE TYPE B KEYWDS 2 CAPCULAR POLYSACCHARIDE, IGVH3-23, IGK A2, IMMUNE SYSTEM EXPDTA THEORETICAL MODEL AUTHOR L.HOUGS,L.JUUL,A.SVEJGAARD,T.BARINGTON REVDAT 3 11-MAR-03 1HOU 1 SOURCE REMARK SSBOND CONECT REVDAT 3 2 1 MASTER REVDAT 2 23-DEC-99 1HOU 1 HEADER JRNL REVDAT 1 11-MAR-99 1HOU 0 JRNL AUTH L.HOUGS,L.JUUL,A.SVEJGAARD,T.BARINGTON JRNL TITL STRUCTURAL REQUIREMENTS OF THE MAJOR PROTECTIVE JRNL TITL 2 ANTIBODY TO HAEMOPHILUS INFLUENZAE TYPE B. JRNL REF INFECT.IMMUN. V. 67 2503 1999 JRNL REFN US ISSN 0019-9567 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ABGEN REMARK 3 AUTHORS : D. SCOTT LINTHICUM, C M REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMIZING, REFER TO HTTP : / REMARK 3 /ABGEN.CVM.TAMU.EDU/ REMARK 4 REMARK 4 1HOU COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 TER REMARK 6 ILE: COUPLED TO IMMUNOGLOBULIN CONSTAND REGION REMARK 6 SER: COUPLED TO IMMUNOGLOBULIN CONSTAND REGION REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-1999. REMARK 100 THE RCSB ID CODE IS RCSB000553. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CG ARG L 95F CE3 TRP H 47 1.24 REMARK 500 CB ARG L 95F CZ3 TRP H 47 1.32 REMARK 500 CB ARG L 95F CE3 TRP H 47 1.33 REMARK 500 O ALA L 80 CG2 VAL L 83 1.77 REMARK 500 CD ARG L 95F O TRP H 47 1.83 REMARK 500 O MET H 100 CZ3 TRP H 103 1.93 REMARK 500 OH TYR L 36 CB MET H 100 1.95 REMARK 500 OH TYR L 34 CB SER L 91 2.06 REMARK 500 OH TYR L 36 CH2 TRP H 103 2.06 REMARK 500 CZ TYR L 36 CH2 TRP H 103 2.12 REMARK 500 CG1 VAL L 85 CE1 TYR L 87 2.13 REMARK 500 CG ARG L 95F CD2 TRP H 47 2.13 REMARK 500 CE1 TYR L 36 CH2 TRP H 103 2.17 REMARK 500 OG SER L 91 CH2 TRP L 96 2.18 REMARK 500 CG GLN H 3 OG SER H 25 2.18 REMARK 500 O ASP L 82 OH TYR L 86 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA H 93 C LYS H 94 N 0.152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU L 79 CA - CB - CG ANGL. DEV. = 26.2 DEGREES REMARK 500 PHE L 98 C - N - CA ANGL. DEV. = 28.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS L 30 -112.07 68.00 REMARK 500 VAL L 51 -83.86 59.11 DBREF 1HOU L 1 106 GB 186016 M80914 1 112 DBREF 1HOU H 1 94 GB 464043 M18513 27 124 DBREF 1HOU H 95 113 GB 464043 M18513 129 145 SEQRES 1 L 112 ASP ILE VAL MET THR GLN THR PRO LEU SER LEU SER VAL SEQRES 2 L 112 THR PRO GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 L 112 GLN SER LEU LEU HIS SER ASP GLY LYS THR TYR LEU TYR SEQRES 4 L 112 TRP TYR LEU GLN LYS PRO GLY GLN PRO PRO GLN LEU LEU SEQRES 5 L 112 ILE TYR GLU VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 112 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 112 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 112 TYR CYS MET GLN SER ILE GLN LEU PRO ARG TRP THR PHE SEQRES 9 L 112 GLY GLN GLY THR LYS VAL GLU ILE SEQRES 1 H 115 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 115 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 115 PHE THR PHE SER SER TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 H 115 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA ILE SER SEQRES 5 H 115 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 115 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 115 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 115 ALA VAL TYR TYR CYS ALA LYS GLY TYR GLY MET ASP VAL SEQRES 9 H 115 TRP GLY GLN GLY THR THR VAL THR VAL SER SER HELIX 1 1 ALA L 80 ASP L 82 5 3 HELIX 2 2 PHE H 29 SER H 31 5 3 HELIX 3 3 ALA H 84 ASP H 86 5 3 SHEET 1 A 4 THR L 5 THR L 7 0 SHEET 2 A 4 ALA L 19 LYS L 24 -1 N LYS L 24 O THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 N ILE L 75 O ALA L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 67 O ASP L 70 SHEET 1 B 2 SER L 10 SER L 12 0 SHEET 2 B 2 LYS L 103 GLU L 105 1 N LYS L 103 O LEU L 11 SHEET 1 C 2 TYR L 32 GLN L 38 0 SHEET 2 C 2 VAL L 85 SER L 91 -1 N SER L 91 O TYR L 32 SHEET 1 D 4 LEU H 5 SER H 7 0 SHEET 2 D 4 LEU H 18 ALA H 23 -1 N ALA H 23 O LEU H 5 SHEET 3 D 4 THR H 77 MET H 82 -1 N MET H 82 O LEU H 18 SHEET 4 D 4 PHE H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 E 5 THR H 107 VAL H 109 0 SHEET 2 E 5 ALA H 88 LYS H 94 -1 N TYR H 90 O THR H 107 SHEET 3 E 5 ALA H 33 GLN H 39 -1 N GLN H 39 O VAL H 89 SHEET 4 E 5 LEU H 45 SER H 52 -1 N ILE H 51 O MET H 34 SHEET 5 E 5 THR H 57 TYR H 59 -1 N TYR H 58 O ALA H 50 SSBOND 1 CYS L 23 CYS L 88 SSBOND 2 CYS H 22 CYS H 92 CISPEP 1 THR L 7 PRO L 8 0 -3.03 CISPEP 2 PRO L 95 ARG L 95F 0 -1.43 CISPEP 3 TYR H 96 GLY H 97 0 -0.80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000