PDB Short entry for 1IC5 HEADER PROTEIN BINDING/HYDROLASE 30-MAR-01 1IC5 TITLE CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME BINDING IG KAPPA CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1 FAB CHAIN H; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: RESIDUES 1-114; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: LYSOZYME C; COMPND 13 CHAIN: Y; COMPND 14 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 17 ORGANISM_COMMON: CHICKEN; SOURCE 18 ORGANISM_TAXID: 9031 KEYWDS ANTIGEN-ANTIBODY COMPLEX, HYHEL-10, ANTI-HEN EGG WHITE LYSOZYME KEYWDS 2 ANTIBODY, PROTEIN BINDING-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SHIROISHI,A.YOKOTA,K.TSUMOTO,H.KONDO,Y.NISHIMIYA,K.HORII, AUTHOR 2 M.MATSUSHIMA,K.OGASAHARA,K.YUTANI,I.KUMAGAI REVDAT 5 10-NOV-21 1IC5 1 SEQADV REVDAT 4 24-FEB-09 1IC5 1 VERSN REVDAT 3 01-APR-03 1IC5 1 JRNL REVDAT 2 25-DEC-02 1IC5 1 REMARK REVDAT 1 18-JUL-01 1IC5 0 JRNL AUTH M.SHIROISHI,A.YOKOTA,K.TSUMOTO,H.KONDO,Y.NISHIMIYA,K.HORII, JRNL AUTH 2 M.MATSUSHIMA,K.OGASAHARA,K.YUTANI,I.KUMAGAI JRNL TITL STRUCTURAL EVIDENCE FOR ENTROPIC CONTRIBUTION OF SALT BRIDGE JRNL TITL 2 FORMATION TO A PROTEIN ANTIGEN-ANTIBODY INTERACTION: THE JRNL TITL 3 CASE OF HEN LYSOZYME-HYHEL-10 FV COMPLEX. JRNL REF J.BIOL.CHEM. V. 276 23042 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11297547 JRNL DOI 10.1074/JBC.M100480200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.049 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000013148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17421 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG6000, MPD, PH 7.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.04300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.50050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.50050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.52150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.50050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.50050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 178.56450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.50050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.50050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.52150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.50050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.50050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 178.56450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 119.04300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 1 OD1 - CG - OD2 ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP L 1 CB - CG - OD2 ANGL. DEV. = -12.3 DEGREES REMARK 500 SER L 7 CA - C - O ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO L 8 CA - N - CD ANGL. DEV. = -9.7 DEGREES REMARK 500 PRO L 8 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG L 24 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG L 45 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG L 45 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 LYS L 49 CA - CB - CG ANGL. DEV. = 25.2 DEGREES REMARK 500 TYR L 50 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 TYR L 50 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 SER L 54 N - CA - CB ANGL. DEV. = -9.5 DEGREES REMARK 500 SER L 56 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG L 61 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 THR L 69 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP L 70 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP L 94 CA - C - O ANGL. DEV. = -14.9 DEGREES REMARK 500 TYR L 96 CB - CG - CD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 SER H 7 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 TYR H 33 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR H 33 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG H 38 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 PRO H 41 CA - C - N ANGL. DEV. = 19.7 DEGREES REMARK 500 ARG H 44 CD - NE - CZ ANGL. DEV. = 11.5 DEGREES REMARK 500 VAL H 51 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG H 71 CD - NE - CZ ANGL. DEV. = 23.1 DEGREES REMARK 500 ARG H 71 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG H 71 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP H 81 CB - CG - OD1 ANGL. DEV. = 11.3 DEGREES REMARK 500 CYS H 95 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP H 101 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL H 111 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 VAL Y 2 N - CA - CB ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP Y 18 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG Y 21 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG Y 21 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR Y 23 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR Y 23 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP Y 66 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG Y 68 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP Y 87 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASN Y 93 CB - CG - OD1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG Y 112 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG Y 114 NH1 - CZ - NH2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG Y 114 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG Y 114 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLN Y 121 CB - CG - CD ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG Y 125 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 CYS Y 127 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG Y 128 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 51 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO L 8 153.38 -41.80 REMARK 500 ALA L 51 -40.18 67.63 REMARK 500 SER L 77 81.53 42.14 REMARK 500 SER H 15 -1.88 77.28 REMARK 500 ALA H 113 102.69 -57.95 REMARK 500 ASN Y 19 34.39 75.76 REMARK 500 ASP Y 48 15.58 -65.38 REMARK 500 PRO Y 70 -105.78 -35.36 REMARK 500 LEU Y 84 56.32 -109.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 7 PRO L 8 -56.30 REMARK 500 TRP L 94 PRO L 95 -42.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER L 7 -23.18 REMARK 500 LEU L 33 10.18 REMARK 500 TRP L 94 -27.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IC4 RELATED DB: PDB REMARK 900 1IC4 CONTAINS LYSOZYME BINDING IG KAPPA CHAIN AND IGG1 FAB CHAIN H REMARK 900 (D32A) AND LYSOZYME C REMARK 900 RELATED ID: 1IC7 RELATED DB: PDB REMARK 900 1IC7 CONTAINS LYSOZYME BINDING IG KAPPA CHAIN AND IGG1 FAB CHAIN H REMARK 900 (D32A/D99A) AND LYSOZYME C DBREF 1IC5 L 1 107 UNP P01642 KV5I_MOUSE 1 107 DBREF 1IC5 H 1 114 UNP P01823 HV47_MOUSE 1 114 DBREF 1IC5 Y 1 129 UNP P00698 LYSC_CHICK 19 147 SEQADV 1IC5 ALA H 99 UNP P01823 ASP 99 ENGINEERED MUTATION SEQRES 1 L 107 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 107 THR PRO GLY ASN SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 L 107 GLN SER ILE GLY ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 L 107 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 L 107 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 L 107 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 L 107 GLU THR GLU ASP PHE GLY MET TYR PHE CYS GLN GLN SER SEQRES 8 L 107 ASN SER TRP PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 107 GLU ILE LYS SEQRES 1 H 114 ASP VAL GLN LEU GLN GLU SER GLY PRO SER LEU VAL LYS SEQRES 2 H 114 PRO SER GLN THR LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 H 114 ASP SER ILE THR SER ASP TYR TRP SER TRP ILE ARG LYS SEQRES 4 H 114 PHE PRO GLY ASN ARG LEU GLU TYR MET GLY TYR VAL SER SEQRES 5 H 114 TYR SER GLY SER THR TYR TYR ASN PRO SER LEU LYS SER SEQRES 6 H 114 ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN TYR SEQRES 7 H 114 TYR LEU ASP LEU ASN SER VAL THR THR GLU ASP THR ALA SEQRES 8 H 114 THR TYR TYR CYS ALA ASN TRP ALA GLY ASP TYR TRP GLY SEQRES 9 H 114 GLN GLY THR LEU VAL THR VAL SER ALA ALA SEQRES 1 Y 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 Y 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 Y 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 Y 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 Y 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 Y 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 Y 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 Y 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 Y 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 Y 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 4 HOH *116(H2 O) HELIX 1 1 GLU L 79 PHE L 83 5 5 HELIX 2 2 SER H 28 ASP H 32 5 5 HELIX 3 3 PRO H 61 LYS H 64 5 4 HELIX 4 4 THR H 86 THR H 90 5 5 HELIX 5 5 GLY Y 4 HIS Y 15 1 12 HELIX 6 6 SER Y 24 ASN Y 37 1 14 HELIX 7 7 CYS Y 80 LEU Y 84 5 5 HELIX 8 8 ILE Y 88 SER Y 100 1 13 HELIX 9 9 ASN Y 103 ALA Y 107 5 5 HELIX 10 10 TRP Y 108 CYS Y 115 1 8 HELIX 11 11 ASP Y 119 ARG Y 125 5 7 SHEET 1 A 4 LEU L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 N SER L 22 O SER L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 N PHE L 71 O CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 O SER L 63 N SER L 74 SHEET 1 B 5 GLN L 53 SER L 54 0 SHEET 2 B 5 ARG L 45 LYS L 49 -1 O LYS L 49 N GLN L 53 SHEET 3 B 5 LEU L 33 GLN L 38 -1 O TRP L 35 N LEU L 47 SHEET 4 B 5 GLY L 84 GLN L 90 -1 O MET L 85 N GLN L 38 SHEET 5 B 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 C 6 GLN L 53 SER L 54 0 SHEET 2 C 6 ARG L 45 LYS L 49 -1 O LYS L 49 N GLN L 53 SHEET 3 C 6 LEU L 33 GLN L 38 -1 O TRP L 35 N LEU L 47 SHEET 4 C 6 GLY L 84 GLN L 90 -1 O MET L 85 N GLN L 38 SHEET 5 C 6 THR L 102 ILE L 106 -1 O THR L 102 N TYR L 86 SHEET 6 C 6 THR L 10 VAL L 13 1 N LEU L 11 O LYS L 103 SHEET 1 D 4 GLN H 3 SER H 7 0 SHEET 2 D 4 LEU H 18 THR H 25 -1 N THR H 21 O SER H 7 SHEET 3 D 4 GLN H 77 LEU H 82 -1 O TYR H 78 N CYS H 22 SHEET 4 D 4 ILE H 67 ASP H 72 -1 O SER H 68 N ASP H 81 SHEET 1 E 6 LEU H 11 VAL H 12 0 SHEET 2 E 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 E 6 ALA H 91 ASN H 97 -1 O ALA H 91 N VAL H 109 SHEET 4 E 6 TRP H 34 PHE H 40 -1 N SER H 35 O ALA H 96 SHEET 5 E 6 ARG H 44 VAL H 51 -1 O ARG H 44 N PHE H 40 SHEET 6 E 6 THR H 57 TYR H 59 -1 N TYR H 58 O TYR H 50 SHEET 1 F 3 THR Y 43 ARG Y 45 0 SHEET 2 F 3 THR Y 51 TYR Y 53 -1 N ASP Y 52 O ASN Y 44 SHEET 3 F 3 ILE Y 58 ASN Y 59 -1 O ILE Y 58 N TYR Y 53 SSBOND 1 CYS L 23 CYS L 88 1555 1555 1.99 SSBOND 2 CYS H 22 CYS H 95 1555 1555 2.06 SSBOND 3 CYS Y 6 CYS Y 127 1555 1555 2.00 SSBOND 4 CYS Y 30 CYS Y 115 1555 1555 1.94 SSBOND 5 CYS Y 64 CYS Y 80 1555 1555 2.07 SSBOND 6 CYS Y 76 CYS Y 94 1555 1555 1.98 CRYST1 57.001 57.001 238.086 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017544 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004200 0.00000