PDB Short entry for 1IH9 HEADER ANTIBIOTIC 19-APR-01 1IH9 TITLE NMR STRUCTURE OF ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC) BOUND TO DPC TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZERVAMICIN IIB; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLOPSIS SALMOSYNNEMATA; SOURCE 3 ORGANISM_TAXID: 118885; SOURCE 4 STRAIN: 336 IMI 58330 KEYWDS ZREVAMICIN, PEPTAIBOL ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC BENT KEYWDS 2 HELIX, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.O.SHENKAREV,T.A.BALASHEVA,R.G.EFREMOV,Z.A.YAKIMENKO, AUTHOR 2 T.V.OVCHINNIKOVA,J.RAAP,A.S.ARSENIEV REVDAT 5 27-JUL-11 1IH9 1 REMARK REVDAT 4 13-JUL-11 1IH9 1 VERSN REVDAT 3 24-FEB-09 1IH9 1 VERSN REVDAT 2 01-APR-03 1IH9 1 JRNL REVDAT 1 13-FEB-02 1IH9 0 JRNL AUTH Z.O.SHENKAREV,T.A.BALASHOVA,R.G.EFREMOV,Z.A.YAKIMENKO, JRNL AUTH 2 T.V.OVCHINNIKOVA,J.RAAP,A.S.ARSENIEV JRNL TITL SPATIAL STRUCTURE OF ZERVAMICIN IIB BOUND TO DPC MICELLES: JRNL TITL 2 IMPLICATIONS FOR VOLTAGE-GATING. JRNL REF BIOPHYS.J. V. 82 762 2002 JRNL REFN ISSN 0006-3495 JRNL PMID 11806918 JRNL DOI 10.1016/S0006-3495(02)75438-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 1.2 REMARK 3 AUTHORS : BIOSYM TECHNOLOGIES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 536 NOESY PEAKS, 174 UPPER CONSTRAINTS REMARK 3 29 ADDITIONAL LOWER CONSTRAINTS 60 ADDITIONAL CONSTRAINTS FOR REMARK 3 HYDROGEN BONDS 11 ANGLE CONSTRAINTS REMARK 4 REMARK 4 1IH9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-01. REMARK 100 THE RCSB ID CODE IS RCSB013265. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1ATM ATM REMARK 210 SAMPLE CONTENTS : 1.8 MM ZRV-IIB; 70MM D-DPC; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 5.3, XEASY 2.1, DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNELING. ENERGY REMARK 210 MINIMISATION. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ZERVAMICIN IIB IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL REMARK 400 FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES. REMARK 400 HERE, ZERVAMICIN IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ZERVAMICIN IIB REMARK 400 CHAIN: A REMARK 400 COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 0 TO 16 REMARK 400 DESCRIPTION: ZERVAMICIN IS A HEXADECAMERIC HELICAL PEPTIDE. REMARK 400 THE N-TERM IS ACETYLATED (RESIDUE 0) REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 11 AIB A 12 1 149.79 REMARK 500 GLN A 11 AIB A 12 6 149.34 REMARK 500 GLN A 11 AIB A 12 9 149.48 REMARK 500 GLN A 11 AIB A 12 10 149.48 REMARK 500 GLN A 11 AIB A 12 11 149.46 REMARK 500 GLN A 11 AIB A 12 12 149.73 REMARK 500 GLN A 11 AIB A 12 13 149.86 REMARK 500 GLN A 11 AIB A 12 14 149.72 REMARK 500 GLN A 11 AIB A 12 15 149.55 REMARK 500 GLN A 11 AIB A 12 19 149.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M24 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E REMARK 900 RELATED ID: 1R9U RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN REMARK 900 METHANOL REMARK 900 RELATED ID: 1DLZ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB REMARK 900 RELATED ID: 1GQ0 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I REMARK 900 RELATED ID: 1JOH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I REMARK 900 RELATED ID: 1AMT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN REMARK 900 RELATED ID: 1EE7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND REMARK 900 TO DPC MICELLES REMARK 900 RELATED ID: 1OB7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C REMARK 900 RELATED ID: 1OB6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B REMARK 900 RELATED ID: 1OB4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A DBREF 1IH9 A 0 16 NOR NOR01092 NOR01092 0 16 SEQRES 1 A 17 ACE TRP ILE GLN DIV ILE THR AIB LEU AIB HYP GLN AIB SEQRES 2 A 17 HYP AIB PRO PHL HET ACE A 0 6 HET DIV A 4 16 HET AIB A 7 13 HET AIB A 9 13 HET HYP A 10 15 HET AIB A 12 13 HET HYP A 13 15 HET AIB A 14 13 HET PHL A 16 23 HETNAM ACE ACETYL GROUP HETNAM DIV D-ISOVALINE HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID HETNAM HYP 4-HYDROXYPROLINE HETNAM PHL L-PHENYLALANINOL HETSYN HYP HYDROXYPROLINE FORMUL 1 ACE C2 H4 O FORMUL 1 DIV C5 H11 N O2 FORMUL 1 AIB 4(C4 H9 N O2) FORMUL 1 HYP 2(C5 H9 N O3) FORMUL 1 PHL C9 H13 N O HELIX 1 1 TRP A 1 AIB A 14 1 14 LINK C ACE A 0 N TRP A 1 1555 1555 1.34 LINK C GLN A 3 N DIV A 4 1555 1555 1.36 LINK C DIV A 4 N ILE A 5 1555 1555 1.36 LINK C THR A 6 N AIB A 7 1555 1555 1.35 LINK C AIB A 7 N LEU A 8 1555 1555 1.35 LINK C LEU A 8 N AIB A 9 1555 1555 1.36 LINK C AIB A 9 N HYP A 10 1555 1555 1.38 LINK C HYP A 10 N GLN A 11 1555 1555 1.35 LINK C GLN A 11 N AIB A 12 1555 1555 1.36 LINK C AIB A 12 N HYP A 13 1555 1555 1.38 LINK C HYP A 13 N AIB A 14 1555 1555 1.36 LINK C AIB A 14 N PRO A 15 1555 1555 1.38 LINK C PRO A 15 N PHL A 16 1555 1555 1.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000