PDB Short entry for 1IJ4 HEADER CELL ADHESION 24-APR-01 1IJ4 TITLE MODEL OF THE ALB2 I-DOMAIN / ICAM-1 D1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN AL/B2 (LFA-1, CD11A/CD18); COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: INSERTED DOMAIN IN ALPHA SUBUNIT; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INTERCELLULAR ADHESION MOLECULE-1; COMPND 7 CHAIN: I; COMPND 8 FRAGMENT: D1 DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN KEYWDS PROTEIN-PROTEIN COMPLEX, MODELING, DOCKING, INTEGRIN EXPDTA THEORETICAL MODEL AUTHOR G.B.LEGGE,G.M.MORRIS,M.F.SANNER,Y.TAKADA,A.J.OLSON, AUTHOR 2 F.GRYNSZPAN REVDAT 2 01-APR-03 1IJ4 1 JRNL REVDAT 1 10-JUL-02 1IJ4 0 JRNL AUTH G.B.LEGGE,G.M.MORRIS,M.F.SANNER,Y.TAKADA,A.J.OLSON, JRNL AUTH 2 F.GRYNSZPAN JRNL TITL MODEL OF THE ALPHALBETA2 INTEGRIN I-DOMAIN/ICAM-1 JRNL TITL 2 DI INTERFACE SUGGESTS THAT SUBTLE CHANGES IN LOOP JRNL TITL 3 ORIENTATION DETERMINE LIGAND SPECIFICITY. JRNL REF PROTEINS V. 48 151 2002 JRNL REFN ASTM PSFGEY US ISSN 0887-3585 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTODOCK 3.05, DISCOVER INSIGHTII REMARK 3 AUTHORS : MORRIS (AUTODOCK), ACCELRYS (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IJ4 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-2001. REMARK 100 THE RCSB ID CODE IS RCSB013320. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS L 62 ARG L 63 148.01 REMARK 500 GLY L 114 GLU L 115 -142.61 REMARK 500 ASP L 123 ALA L 124 147.63 REMARK 500 PHE L 173 THR L 174 142.80 REMARK 500 LEU I 43 LEU I 44 144.47 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IAM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ICAM-1 D1/D2 DOMAINS REMARK 900 RELATED ID: 1ZON RELATED DB: PDB REMARK 900 DIVALENT CATION FREE AL I-DOMAIN REMARK 900 RELATED ID: 1LFA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF "CLOSED" AL I-DOMAIN REMARK 900 RELATED ID: 1IDO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE "OPEN" AM I-DOMAIN DBREF 1IJ4 L 2 182 UNP P20701 ITAL_HUMAN 153 333 DBREF 1IJ4 I 17 82 UNP P05362 ICA1_HUMAN 44 109 SEQRES 1 L 181 GLY ASN VAL ASP LEU VAL PHE LEU PHE ASP GLY SER MET SEQRES 2 L 181 SER LEU GLN PRO ASP GLU PHE GLN LYS ILE LEU ASP PHE SEQRES 3 L 181 MET LYS ASP VAL MET LYS LYS LEU SER ASN THR SER TYR SEQRES 4 L 181 GLN PHE ALA ALA VAL GLN PHE SER THR SER TYR LYS THR SEQRES 5 L 181 GLU PHE ASP PHE SER ASP TYR VAL LYS ARG LYS ASP PRO SEQRES 6 L 181 ASP ALA LEU LEU LYS HIS VAL LYS HIS MET LEU LEU LEU SEQRES 7 L 181 THR ASN THR PHE GLY ALA ILE ASN TYR VAL ALA THR GLU SEQRES 8 L 181 VAL PHE ARG GLU GLU LEU GLY ALA ARG PRO ASP ALA THR SEQRES 9 L 181 LYS VAL LEU ILE ILE ILE THR ASP GLY GLU ALA THR ASP SEQRES 10 L 181 SER GLY ASN ILE ASP ALA ALA LYS ASP ILE ILE ARG TYR SEQRES 11 L 181 ILE ILE GLY ILE GLY LYS HIS PHE GLN THR LYS GLU SER SEQRES 12 L 181 GLN GLU THR LEU HIS LYS PHE ALA SER LYS PRO ALA SER SEQRES 13 L 181 GLU PHE VAL LYS ILE LEU ASP THR PHE GLU LYS LEU LYS SEQRES 14 L 181 ASP LEU PHE THR GLU LEU GLN LYS LYS ILE TYR VAL SEQRES 1 I 66 VAL LEU VAL THR CYS SER THR SER CYS ASP GLN PRO LYS SEQRES 2 I 66 LEU LEU GLY ILE GLU THR PRO LEU PRO LYS LYS GLU LEU SEQRES 3 I 66 LEU LEU PRO GLY ASN ASN ARG LYS VAL TYR GLU LEU SER SEQRES 4 I 66 ASN VAL GLN GLU ASP SER GLN PRO MET CYS TYR SER ASN SEQRES 5 I 66 CYS PRO ASP GLY GLN SER THR ALA LYS THR PHE LEU THR SEQRES 6 I 66 VAL HET MG L 1 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *2(H2 O1) HELIX 1 1 GLN L 17 LEU L 35 1 19 HELIX 2 2 SER L 58 ARG L 63 1 6 HELIX 3 3 ASP L 65 LEU L 70 1 6 HELIX 4 4 THR L 82 GLU L 92 1 11 HELIX 5 5 ARG L 95 GLY L 99 5 5 HELIX 6 6 ILE L 135 GLN L 140 5 6 HELIX 7 7 GLU L 146 ALA L 152 1 7 HELIX 8 8 THR L 165 GLU L 167 5 3 HELIX 9 9 LYS L 168 LYS L 179 1 12 SHEET 1 A 5 TYR L 51 PHE L 55 0 SHEET 2 A 5 TYR L 40 PHE L 47 -1 N ALA L 44 O PHE L 55 SHEET 3 A 5 VAL L 4 ASP L 11 1 O VAL L 4 N GLN L 41 SHEET 4 A 5 THR L 105 ILE L 111 1 O THR L 105 N ASP L 5 SHEET 5 A 5 ILE L 129 ILE L 132 1 N ILE L 129 O LYS L 106 SHEET 1 B 3 LEU I 18 SER I 22 0 SHEET 2 B 3 ARG I 49 LEU I 54 -1 N LYS I 50 O CYS I 21 SHEET 3 B 3 LYS I 39 LEU I 42 -1 O LYS I 40 N GLU I 53 SHEET 1 C 3 LEU I 31 GLU I 34 0 SHEET 2 C 3 MET I 64 SER I 67 -1 O MET I 64 N GLU I 34 SHEET 3 C 3 SER I 74 LYS I 77 -1 O SER I 74 N SER I 67 SSBOND 1 CYS I 21 CYS I 65 SSBOND 2 CYS I 25 CYS I 69 CISPEP 1 LYS L 154 PRO L 155 0 24.60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000