PDB Short entry for 1IO5 HEADER HYDROLASE 14-JAN-01 1IO5 TITLE HYDROGEN AND HYDRATION OF HEN EGG-WHITE LYSOZYME DETERMINED BY NEUTRON TITLE 2 DIFFRACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: EGG WHITE KEYWDS HYDROGEN, HYDRATION, HYDROLASE EXPDTA NEUTRON DIFFRACTION AUTHOR N.NIIMURA,Y.MINEZAKI,T.NONAKA,J.C.CASTAGNA,F.CIPRIANI,P.HOEGHOEJ, AUTHOR 2 M.S.LEHMANN,C.WILKINSON REVDAT 8 25-OCT-23 1IO5 1 REMARK REVDAT 7 07-MAR-18 1IO5 1 REMARK REVDAT 6 04-OCT-17 1IO5 1 REMARK REVDAT 5 13-JUL-11 1IO5 1 VERSN REVDAT 4 24-FEB-09 1IO5 1 VERSN REVDAT 3 01-APR-03 1IO5 1 JRNL REVDAT 2 21-JAN-03 1IO5 1 REMARK REVDAT 1 07-FEB-01 1IO5 0 JRNL AUTH N.NIIMURA,Y.MINEZAKI,T.NONAKA,J.C.CASTAGNA,F.CIPRIANI, JRNL AUTH 2 P.HOGHOJ,M.S.LEHMANN,C.WILKINSON JRNL TITL NEUTRON LAUE DIFFRACTOMETRY WITH AN IMAGING PLATE PROVIDES JRNL TITL 2 AN EFFECTIVE DATA COLLECTION REGIME FOR NEUTRON PROTEIN JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF NAT.STRUCT.BIOL. V. 4 909 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9360606 JRNL DOI 10.1038/NSB1197-909 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.NIIMURA REMARK 1 TITL NEUTRONS EXPAND THE FIELD OF STRUCTURAL BIOLOGY REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 9 602 1999 REMARK 1 REFN ISSN 0959-440X REMARK 1 DOI 10.1016/S0959-440X(99)00012-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCP4 LAUE SUITE MODIFIED FOR CYLINDER GEOMETRY (C. W REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 2.220 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000005112. REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 03-SEP-95 REMARK 230 TEMPERATURE (KELVIN) : NULL REMARK 230 PH : 7.00 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : NULL REMARK 230 WAVELENGTH OR RANGE (A) : 2.9-4.0 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : LADI REMARK 230 INTENSITY-INTEGRATION SOFTWARE : INTLDM, CCP4 LAUE SUITE MODIFIED REMARK 230 FOR CYLINDER GEOMETRY (C. REMARK 230 WILKINSON) REMARK 230 DATA SCALING SOFTWARE : INTLDM REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 6700 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 230 RESOLUTION RANGE LOW (A) : 8.940 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 81.4 REMARK 230 DATA REDUNDANCY : 5.700 REMARK 230 R MERGE (I) : 0.16400 REMARK 230 R SYM (I) : NULL REMARK 230 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 230 COMPLETENESS FOR SHELL (%) : 77.1 REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : NULL REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 <I/SIGMA(I)> FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : X-PLOR REMARK 230 STARTING MODEL: PDB ENTRY 193L REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NICL2, PH 7.0, CONCENTRATION GRADIENT REMARK 280 METHOD, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.55000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.40000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.82500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.40000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.27500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.82500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.27500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O DOD A 306 LIES ON A SPECIAL POSITION. REMARK 375 O DOD A 362 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 D1 DOD A 171 D2 DOD A 197 0.44 REMARK 500 D1 DOD A 273 D2 DOD A 279 0.60 REMARK 500 D1 DOD A 267 D1 DOD A 285 0.62 REMARK 500 HZ2 TRP A 62 D2 DOD A 309 0.71 REMARK 500 D2 DOD A 326 D1 DOD A 358 0.72 REMARK 500 D2 DOD A 257 D1 DOD A 361 0.73 REMARK 500 D2 DOD A 159 D2 DOD A 218 0.82 REMARK 500 O DOD A 282 D1 DOD A 298 0.84 REMARK 500 D1 DOD A 283 D2 DOD A 361 0.88 REMARK 500 D2 DOD A 171 D2 DOD A 259 0.89 REMARK 500 D1 DOD A 219 D1 DOD A 224 0.91 REMARK 500 HD11 LEU A 8 D1 DOD A 370 0.92 REMARK 500 D1 DOD A 273 O DOD A 279 0.95 REMARK 500 D1 DOD A 139 D1 DOD A 223 0.96 REMARK 500 O DOD A 227 D2 DOD A 233 0.97 REMARK 500 D1 LYS A 1 D2 DOD A 132 0.98 REMARK 500 D2 DOD A 301 D2 DOD A 303 0.99 REMARK 500 DE ARG A 21 D1 DOD A 249 1.00 REMARK 500 D2 DOD A 232 D2 DOD A 294 1.03 REMARK 500 DE ARG A 112 O DOD A 369 1.05 REMARK 500 OE1 GLU A 7 D2 DOD A 270 1.06 REMARK 500 D2 DOD A 209 D2 DOD A 332 1.07 REMARK 500 D2 DOD A 312 D1 DOD A 315 1.08 REMARK 500 D1 DOD A 186 D2 DOD A 242 1.08 REMARK 500 D1 DOD A 183 O DOD A 376 1.11 REMARK 500 DH21 ARG A 112 D1 DOD A 369 1.12 REMARK 500 D2 DOD A 260 D2 DOD A 296 1.15 REMARK 500 D1 DOD A 165 D2 DOD A 311 1.15 REMARK 500 O DOD A 139 D1 DOD A 223 1.16 REMARK 500 D1 DOD A 155 D2 DOD A 278 1.17 REMARK 500 D2 DOD A 179 D1 DOD A 182 1.19 REMARK 500 O DOD A 283 D2 DOD A 361 1.20 REMARK 500 D2 DOD A 211 D1 DOD A 281 1.20 REMARK 500 DG1 THR A 51 DH21 ARG A 68 1.23 REMARK 500 D1 DOD A 140 O DOD A 271 1.24 REMARK 500 HZ2 TRP A 62 O DOD A 309 1.24 REMARK 500 D1 DOD A 152 O DOD A 341 1.25 REMARK 500 O DOD A 171 D2 DOD A 197 1.26 REMARK 500 D1 DOD A 331 O DOD A 340 1.27 REMARK 500 O DOD A 203 O DOD A 345 1.30 REMARK 500 HG LEU A 56 D2 DOD A 276 1.30 REMARK 500 O DOD A 302 D1 DOD A 365 1.30 REMARK 500 O DOD A 283 D2 DOD A 288 1.31 REMARK 500 O DOD A 273 D2 DOD A 279 1.31 REMARK 500 D1 DOD A 171 O DOD A 197 1.32 REMARK 500 HE3 LYS A 97 D1 DOD A 313 1.32 REMARK 500 D1 DOD A 257 D2 DOD A 298 1.32 REMARK 500 NE ARG A 21 D1 DOD A 249 1.32 REMARK 500 DE21 GLN A 121 D1 DOD A 155 1.33 REMARK 500 O DOD A 272 D1 DOD A 356 1.33 REMARK 500 REMARK 500 THIS ENTRY HAS 105 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 D1 DOD A 296 D2 DOD A 316 1554 0.58 REMARK 500 D2 DOD A 191 D2 DOD A 358 7556 0.80 REMARK 500 DH11 ARG A 61 D1 DOD A 143 3555 0.87 REMARK 500 O DOD A 201 D1 DOD A 329 8555 0.91 REMARK 500 HD11 LEU A 129 D1 DOD A 246 4454 1.09 REMARK 500 D1 DOD A 335 O DOD A 336 8555 1.14 REMARK 500 HD13 LEU A 129 O DOD A 246 4454 1.14 REMARK 500 O DOD A 296 D2 DOD A 316 1554 1.15 REMARK 500 D1 DOD A 296 O DOD A 316 1554 1.41 REMARK 500 D1 DOD A 142 O DOD A 184 6556 1.51 REMARK 500 O DOD A 350 D2 DOD A 350 8556 1.54 REMARK 500 CD1 LEU A 129 D1 DOD A 246 4454 1.58 REMARK 500 O DOD A 350 O DOD A 350 8556 1.59 REMARK 500 O DOD A 217 O DOD A 217 8555 1.68 REMARK 500 CD1 LEU A 129 O DOD A 246 4454 1.83 REMARK 500 O DOD A 201 O DOD A 329 8555 1.84 REMARK 500 O DOD A 296 O DOD A 316 1554 2.04 REMARK 500 O DOD A 335 O DOD A 336 8555 2.05 REMARK 500 O DOD A 175 O DOD A 175 7557 2.12 REMARK 500 O DOD A 378 O DOD A 378 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 -35.23 -39.03 REMARK 500 ASN A 19 26.92 97.25 REMARK 500 ARG A 21 -1.04 69.63 REMARK 500 SER A 36 -11.39 -164.39 REMARK 500 ASN A 44 114.69 -164.98 REMARK 500 ASP A 48 -14.40 -48.23 REMARK 500 GLN A 57 92.09 55.18 REMARK 500 ARG A 68 10.06 -161.91 REMARK 500 ASN A 77 68.04 67.84 REMARK 500 SER A 85 158.08 -46.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 5 0.10 SIDE CHAIN REMARK 500 ARG A 14 0.20 SIDE CHAIN REMARK 500 ARG A 21 0.09 SIDE CHAIN REMARK 500 ARG A 45 0.10 SIDE CHAIN REMARK 500 ARG A 61 0.30 SIDE CHAIN REMARK 500 ARG A 73 0.21 SIDE CHAIN REMARK 500 ARG A 112 0.08 SIDE CHAIN REMARK 500 ARG A 114 0.12 SIDE CHAIN REMARK 500 ARG A 128 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 12 10.31 REMARK 500 ASP A 18 11.40 REMARK 500 SER A 24 -10.46 REMARK 500 LEU A 25 11.75 REMARK 500 TRP A 28 11.77 REMARK 500 ALA A 32 13.28 REMARK 500 GLN A 41 -16.00 REMARK 500 ALA A 42 -13.98 REMARK 500 ASN A 44 -12.80 REMARK 500 ASP A 52 10.01 REMARK 500 GLY A 54 -12.05 REMARK 500 ILE A 58 -11.19 REMARK 500 ASN A 59 -11.39 REMARK 500 SER A 60 10.08 REMARK 500 ASN A 65 -12.11 REMARK 500 ARG A 68 -12.63 REMARK 500 ARG A 73 -10.90 REMARK 500 ASN A 77 -10.51 REMARK 500 CYS A 80 13.85 REMARK 500 ASP A 87 -10.90 REMARK 500 ILE A 88 -12.25 REMARK 500 SER A 91 10.66 REMARK 500 ALA A 95 12.05 REMARK 500 LYS A 96 10.47 REMARK 500 GLY A 104 -10.06 REMARK 500 ALA A 110 15.46 REMARK 500 GLN A 121 10.64 REMARK 500 ARG A 125 12.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 1IO5 A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 2 DOD *251(D2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 SER A 24 GLU A 35 1 12 HELIX 3 3 ASP A 87 VAL A 92 5 6 HELIX 4 4 CYS A 94 VAL A 99 1 6 HELIX 5 5 ASN A 103 ALA A 107 5 5 HELIX 6 6 TRP A 108 ASN A 113 1 6 HELIX 7 7 VAL A 120 ILE A 124 5 5 SHEET 1 A 2 THR A 43 ARG A 45 0 SHEET 2 A 2 THR A 51 TYR A 53 -1 N ASP A 52 O ASN A 44 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.02 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.02 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.02 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.02 CRYST1 80.800 80.800 37.100 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026954 0.00000