PDB Short entry for 1IUF HEADER DNA BINDING PROTEIN 04-MAR-02 1IUF TITLE LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN TITLE 2 SCHIZOSACCHAROMYCES POMBE ABP1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROMERE ABP1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: ARS-BINDING PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGADE KEYWDS CENTROMERE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 2 STRUCTURAL GENOMICS, DNA BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR J.KIKUCHI,J.IWAHARA,T.KIGAWA,Y.MURAKAMI,T.OKAZAKI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 27-DEC-23 1IUF 1 REMARK REVDAT 4 23-FEB-22 1IUF 1 REMARK SEQADV REVDAT 3 24-FEB-09 1IUF 1 VERSN REVDAT 2 21-JAN-03 1IUF 1 TITLE SOURCE JRNL REVDAT 1 05-JUN-02 1IUF 0 JRNL AUTH J.KIKUCHI,J.IWAHARA,T.KIGAWA,Y.MURAKAMI,T.OKAZAKI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE DETERMINATION OF THE TWO DNA-BINDING JRNL TITL 2 DOMAINS IN THE SCHIZOSACCHAROMYCES POMBE ABP1 PROTEIN BY A JRNL TITL 3 COMBINATION OF DIPOLAR COUPLING AND DIFFUSION ANISOTROPY JRNL TITL 4 RESTRAINTS. JRNL REF J.BIOMOL.NMR V. 22 333 2002 JRNL REFN ISSN 0925-2738 JRNL PMID 12018481 JRNL DOI 10.1023/A:1014977808170 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUAL SIPOLAR COUPLING DATA WERE MEASURED IN PF1 PHAGE LIQUID REMARK 3 CRYSTAL REMARK 3 DIFFUSION ANISOTROPY RESTRAINTS WERE MEASURED IN SOLUTION REMARK 4 REMARK 4 1IUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000005287. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM ABP1 U-15N, 13C; 50MM TRIS REMARK 210 BUFFER; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C/15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED REMARK 210 WITH SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 104 H ALA A 108 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A -1 -60.11 -104.92 REMARK 500 HIS A 0 174.80 60.98 REMARK 500 LYS A 3 -94.32 -94.76 REMARK 500 ILE A 4 -130.09 46.15 REMARK 500 LYS A 5 91.59 68.10 REMARK 500 ARG A 6 -71.74 74.84 REMARK 500 ARG A 7 -77.23 -132.91 REMARK 500 ALA A 8 -91.93 65.33 REMARK 500 ILE A 9 133.19 61.13 REMARK 500 THR A 10 -151.16 -151.20 REMARK 500 TYR A 20 -70.64 -62.90 REMARK 500 GLN A 23 79.21 -115.27 REMARK 500 ASN A 26 -71.88 104.18 REMARK 500 SER A 28 -96.60 -67.02 REMARK 500 LYS A 43 120.20 164.22 REMARK 500 ASP A 44 27.42 -166.71 REMARK 500 SER A 55 -66.88 -109.79 REMARK 500 SER A 56 -75.91 -52.75 REMARK 500 VAL A 65 -154.54 -88.54 REMARK 500 PRO A 68 -72.31 -93.07 REMARK 500 TRP A 69 -79.64 -99.76 REMARK 500 ASP A 70 23.14 -147.81 REMARK 500 ASN A 74 -151.05 -161.99 REMARK 500 ARG A 75 74.50 41.49 REMARK 500 PRO A 77 -145.81 -61.14 REMARK 500 GLU A 88 -33.81 -36.10 REMARK 500 ASP A 95 -154.74 59.25 REMARK 500 ALA A 97 168.03 -43.02 REMARK 500 LEU A 99 93.06 57.60 REMARK 500 GLU A 102 -29.80 -37.43 REMARK 500 LYS A 105 -28.41 -36.00 REMARK 500 ASP A 120 49.47 79.49 REMARK 500 PRO A 122 90.57 -62.18 REMARK 500 PRO A 124 -73.89 -88.44 REMARK 500 ASN A 125 43.04 -161.44 REMARK 500 HIS A 138 -45.95 -160.18 REMARK 500 LEU A 140 -165.14 55.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MY_001000008.1 RELATED DB: TARGETDB DBREF 1IUF A 1 141 UNP P49777 ABP1_SCHPO 1 141 SEQADV 1IUF GLY A -2 UNP P49777 CLONING ARTIFACT SEQADV 1IUF ILE A -1 UNP P49777 CLONING ARTIFACT SEQADV 1IUF HIS A 0 UNP P49777 CLONING ARTIFACT SEQRES 1 A 144 GLY ILE HIS MET GLY LYS ILE LYS ARG ARG ALA ILE THR SEQRES 2 A 144 GLU HIS GLU LYS ARG ALA LEU ARG HIS TYR PHE PHE GLN SEQRES 3 A 144 LEU GLN ASN ARG SER GLY GLN GLN ASP LEU ILE GLU TRP SEQRES 4 A 144 PHE ARG GLU LYS PHE GLY LYS ASP ILE SER GLN PRO SER SEQRES 5 A 144 VAL SER GLN ILE LEU SER SER LYS TYR SER TYR LEU ASP SEQRES 6 A 144 ASN THR VAL GLU LYS PRO TRP ASP VAL LYS ARG ASN ARG SEQRES 7 A 144 PRO PRO LYS TYR PRO LEU LEU GLU ALA ALA LEU PHE GLU SEQRES 8 A 144 TRP GLN VAL GLN GLN GLY ASP ASP ALA THR LEU SER GLY SEQRES 9 A 144 GLU THR ILE LYS ARG ALA ALA ALA ILE LEU TRP HIS LYS SEQRES 10 A 144 ILE PRO GLU TYR GLN ASP GLN PRO VAL PRO ASN PHE SER SEQRES 11 A 144 ASN GLY TRP LEU GLU GLY PHE ARG LYS ARG HIS ILE LEU SEQRES 12 A 144 HIS HELIX 1 1 GLU A 11 GLN A 23 1 13 HELIX 2 2 GLY A 29 GLY A 42 1 14 HELIX 3 3 SER A 51 LEU A 61 1 11 HELIX 4 4 TYR A 79 GLN A 93 1 15 HELIX 5 5 GLY A 101 ILE A 115 1 15 HELIX 6 6 ASN A 128 HIS A 138 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000