PDB Short entry for 1J0A HEADER LYASE 12-NOV-02 1J0A TITLE CRYSTAL STRUCTURE ANALYSIS OF THE ACC DEAMINASE HOMOLOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: AHP, ACC DEAMINASE; COMPND 5 EC: 4.1.99.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PLP DEPENDENT, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FUJINO,T.OSE,M.HONMA,M.YAO,I.TANAKA REVDAT 5 27-DEC-23 1J0A 1 REMARK LINK REVDAT 4 13-JUL-11 1J0A 1 VERSN REVDAT 3 24-FEB-09 1J0A 1 VERSN REVDAT 2 16-NOV-04 1J0A 1 JRNL REVDAT 1 12-MAY-03 1J0A 0 JRNL AUTH A.FUJINO,T.OSE,M.YAO,T.TOKIWANO,M.HONMA,N.WATANABE,I.TANAKA JRNL TITL STRUCTURAL AND ENZYMATIC PROPERTIES OF JRNL TITL 2 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE HOMOLOGUE FROM JRNL TITL 3 PYROCOCCUS HORIKOSHII JRNL REF J.MOL.BIOL. V. 341 999 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15328614 JRNL DOI 10.1016/J.JMB.2004.06.062 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 33228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2759 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.03 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2936 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 238 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.16400 REMARK 3 B22 (A**2) : 2.16400 REMARK 3 B33 (A**2) : -4.32900 REMARK 3 B12 (A**2) : -2.14300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.542 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.01 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.026 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE. REMARK 4 REMARK 4 1J0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000005468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL40B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792, 0.9795, 0.9640 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : 0.26000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, 2-PROPANOL, REMARK 280 PHOSPHATE, PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.68733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.34367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.34367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.68733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 211.89910 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.34367 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -237.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 -0.500000 0.866025 0.000000 -61.17000 REMARK 350 BIOMT2 1 -0.866025 -0.500000 0.000000 105.94955 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 38.34367 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 122.34000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.68733 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 115.03100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ3 TRP A 20 CZ3 TRP A 20 5675 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 132 C GLU C 132 O -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 245 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 PRO C 19 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 GLU C 132 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 19 55.27 -99.16 REMARK 500 TRP A 20 167.82 167.18 REMARK 500 GLU A 106 48.63 -76.79 REMARK 500 ALA A 127 168.21 -44.91 REMARK 500 GLU A 138 -5.77 -57.39 REMARK 500 ALA A 141 -72.64 -80.47 REMARK 500 GLU A 142 -29.51 -36.78 REMARK 500 LEU A 144 -17.84 -48.05 REMARK 500 LYS A 145 34.06 -87.76 REMARK 500 GLU A 147 34.83 -82.61 REMARK 500 ARG A 149 145.99 -24.16 REMARK 500 ALA A 159 41.63 -67.74 REMARK 500 ARG A 218 111.41 -36.89 REMARK 500 PHE A 219 -95.45 -50.04 REMARK 500 GLU A 221 -78.00 -164.14 REMARK 500 ARG A 245 96.67 84.50 REMARK 500 TYR A 282 -80.97 -118.80 REMARK 500 SER A 323 4.21 -52.28 REMARK 500 ARG B 14 147.86 -172.13 REMARK 500 LYS B 68 -76.89 -58.09 REMARK 500 ARG B 123 88.47 -159.39 REMARK 500 ALA B 127 -83.81 -24.34 REMARK 500 PHE B 131 36.30 -50.80 REMARK 500 GLU B 132 55.74 -113.53 REMARK 500 LEU B 133 41.02 -102.79 REMARK 500 ALA B 159 59.24 -67.10 REMARK 500 ASP B 208 58.27 71.46 REMARK 500 VAL B 242 101.46 -54.01 REMARK 500 GLU B 243 73.56 -117.13 REMARK 500 VAL B 244 174.08 171.69 REMARK 500 TYR B 282 -73.81 -117.30 REMARK 500 LYS B 296 4.27 -63.05 REMARK 500 GLU C 33 13.19 -68.99 REMARK 500 GLU C 106 41.01 -75.51 REMARK 500 ASP C 126 60.44 -105.85 REMARK 500 LYS C 128 145.40 -38.02 REMARK 500 ASP C 129 2.26 -57.72 REMARK 500 ALA C 159 57.12 -68.20 REMARK 500 PHE C 219 -114.71 -113.82 REMARK 500 MET C 223 -72.33 -59.76 REMARK 500 SER C 225 -70.29 -66.54 REMARK 500 GLU C 243 -140.27 -59.89 REMARK 500 TYR C 251 41.39 -145.16 REMARK 500 TYR C 282 -74.95 -116.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 167 0.07 SIDE CHAIN REMARK 500 TYR B 249 0.07 SIDE CHAIN REMARK 500 TYR C 167 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1747 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F2D RELATED DB: PDB REMARK 900 ACC DEAMINASE FROM HANSENULA SATURNUS REMARK 900 RELATED ID: 1J0B RELATED DB: PDB REMARK 900 ACC DEAMINASE HOMOLOGURE COMPLEXED WITH INHIITOR REMARK 900 RELATED ID: 1J0C RELATED DB: PDB REMARK 900 ACC DEAMINASE MUTATED TO CATALYTIC RESIDUE REMARK 900 RELATED ID: 1J0D RELATED DB: PDB REMARK 900 ACC DEAMINASE MUTANT COMPLEXED WITH ACC REMARK 900 RELATED ID: 1J0E RELATED DB: PDB REMARK 900 ACC DEAMINASE MUTANT REACTON INTERMEDIATE DBREF 1J0A A 1 325 UNP O57809 1A1D_PYRHO 1 325 DBREF 1J0A B 1 325 UNP O57809 1A1D_PYRHO 1 325 DBREF 1J0A C 1 325 UNP O57809 1A1D_PYRHO 1 325 SEQRES 1 A 325 MET HIS PRO LYS ILE PHE ALA LEU LEU ALA LYS PHE PRO SEQRES 2 A 325 ARG VAL GLU LEU ILE PRO TRP GLU THR PRO ILE GLN TYR SEQRES 3 A 325 LEU PRO ASN ILE SER ARG GLU ILE GLY ALA ASP VAL TYR SEQRES 4 A 325 ILE LYS ARG ASP ASP LEU THR GLY LEU GLY ILE GLY GLY SEQRES 5 A 325 ASN LYS ILE ARG LYS LEU GLU TYR LEU LEU GLY ASP ALA SEQRES 6 A 325 LEU SER LYS GLY ALA ASP VAL VAL ILE THR VAL GLY ALA SEQRES 7 A 325 VAL HIS SER ASN HIS ALA PHE VAL THR GLY LEU ALA ALA SEQRES 8 A 325 LYS LYS LEU GLY LEU ASP ALA ILE LEU VAL LEU ARG GLY SEQRES 9 A 325 LYS GLU GLU LEU LYS GLY ASN TYR LEU LEU ASP LYS ILE SEQRES 10 A 325 MET GLY ILE GLU THR ARG VAL TYR ASP ALA LYS ASP SER SEQRES 11 A 325 PHE GLU LEU MET LYS TYR ALA GLU GLU ILE ALA GLU GLU SEQRES 12 A 325 LEU LYS ARG GLU GLY ARG LYS PRO TYR VAL ILE PRO PRO SEQRES 13 A 325 GLY GLY ALA SER PRO ILE GLY THR LEU GLY TYR VAL ARG SEQRES 14 A 325 ALA VAL GLY GLU ILE ALA THR GLN SER GLU VAL LYS PHE SEQRES 15 A 325 ASP SER ILE VAL VAL ALA ALA GLY SER GLY GLY THR LEU SEQRES 16 A 325 ALA GLY LEU SER LEU GLY LEU SER ILE LEU ASN GLU ASP SEQRES 17 A 325 ILE ARG PRO VAL GLY ILE ALA VAL GLY ARG PHE GLY GLU SEQRES 18 A 325 VAL MET THR SER LYS LEU ASP ASN LEU ILE LYS GLU ALA SEQRES 19 A 325 ALA GLU LEU LEU GLY VAL LYS VAL GLU VAL ARG PRO GLU SEQRES 20 A 325 LEU TYR ASP TYR SER PHE GLY GLU TYR GLY LYS ILE THR SEQRES 21 A 325 GLY GLU VAL ALA GLN ILE ILE ARG LYS VAL GLY THR ARG SEQRES 22 A 325 GLU GLY ILE ILE LEU ASP PRO VAL TYR THR GLY LYS ALA SEQRES 23 A 325 PHE TYR GLY LEU VAL ASP LEU ALA ARG LYS GLY GLU LEU SEQRES 24 A 325 GLY GLU LYS ILE LEU PHE ILE HIS THR GLY GLY ILE SER SEQRES 25 A 325 GLY THR PHE HIS TYR GLY ASP LYS LEU LEU SER LEU LEU SEQRES 1 B 325 MET HIS PRO LYS ILE PHE ALA LEU LEU ALA LYS PHE PRO SEQRES 2 B 325 ARG VAL GLU LEU ILE PRO TRP GLU THR PRO ILE GLN TYR SEQRES 3 B 325 LEU PRO ASN ILE SER ARG GLU ILE GLY ALA ASP VAL TYR SEQRES 4 B 325 ILE LYS ARG ASP ASP LEU THR GLY LEU GLY ILE GLY GLY SEQRES 5 B 325 ASN LYS ILE ARG LYS LEU GLU TYR LEU LEU GLY ASP ALA SEQRES 6 B 325 LEU SER LYS GLY ALA ASP VAL VAL ILE THR VAL GLY ALA SEQRES 7 B 325 VAL HIS SER ASN HIS ALA PHE VAL THR GLY LEU ALA ALA SEQRES 8 B 325 LYS LYS LEU GLY LEU ASP ALA ILE LEU VAL LEU ARG GLY SEQRES 9 B 325 LYS GLU GLU LEU LYS GLY ASN TYR LEU LEU ASP LYS ILE SEQRES 10 B 325 MET GLY ILE GLU THR ARG VAL TYR ASP ALA LYS ASP SER SEQRES 11 B 325 PHE GLU LEU MET LYS TYR ALA GLU GLU ILE ALA GLU GLU SEQRES 12 B 325 LEU LYS ARG GLU GLY ARG LYS PRO TYR VAL ILE PRO PRO SEQRES 13 B 325 GLY GLY ALA SER PRO ILE GLY THR LEU GLY TYR VAL ARG SEQRES 14 B 325 ALA VAL GLY GLU ILE ALA THR GLN SER GLU VAL LYS PHE SEQRES 15 B 325 ASP SER ILE VAL VAL ALA ALA GLY SER GLY GLY THR LEU SEQRES 16 B 325 ALA GLY LEU SER LEU GLY LEU SER ILE LEU ASN GLU ASP SEQRES 17 B 325 ILE ARG PRO VAL GLY ILE ALA VAL GLY ARG PHE GLY GLU SEQRES 18 B 325 VAL MET THR SER LYS LEU ASP ASN LEU ILE LYS GLU ALA SEQRES 19 B 325 ALA GLU LEU LEU GLY VAL LYS VAL GLU VAL ARG PRO GLU SEQRES 20 B 325 LEU TYR ASP TYR SER PHE GLY GLU TYR GLY LYS ILE THR SEQRES 21 B 325 GLY GLU VAL ALA GLN ILE ILE ARG LYS VAL GLY THR ARG SEQRES 22 B 325 GLU GLY ILE ILE LEU ASP PRO VAL TYR THR GLY LYS ALA SEQRES 23 B 325 PHE TYR GLY LEU VAL ASP LEU ALA ARG LYS GLY GLU LEU SEQRES 24 B 325 GLY GLU LYS ILE LEU PHE ILE HIS THR GLY GLY ILE SER SEQRES 25 B 325 GLY THR PHE HIS TYR GLY ASP LYS LEU LEU SER LEU LEU SEQRES 1 C 325 MET HIS PRO LYS ILE PHE ALA LEU LEU ALA LYS PHE PRO SEQRES 2 C 325 ARG VAL GLU LEU ILE PRO TRP GLU THR PRO ILE GLN TYR SEQRES 3 C 325 LEU PRO ASN ILE SER ARG GLU ILE GLY ALA ASP VAL TYR SEQRES 4 C 325 ILE LYS ARG ASP ASP LEU THR GLY LEU GLY ILE GLY GLY SEQRES 5 C 325 ASN LYS ILE ARG LYS LEU GLU TYR LEU LEU GLY ASP ALA SEQRES 6 C 325 LEU SER LYS GLY ALA ASP VAL VAL ILE THR VAL GLY ALA SEQRES 7 C 325 VAL HIS SER ASN HIS ALA PHE VAL THR GLY LEU ALA ALA SEQRES 8 C 325 LYS LYS LEU GLY LEU ASP ALA ILE LEU VAL LEU ARG GLY SEQRES 9 C 325 LYS GLU GLU LEU LYS GLY ASN TYR LEU LEU ASP LYS ILE SEQRES 10 C 325 MET GLY ILE GLU THR ARG VAL TYR ASP ALA LYS ASP SER SEQRES 11 C 325 PHE GLU LEU MET LYS TYR ALA GLU GLU ILE ALA GLU GLU SEQRES 12 C 325 LEU LYS ARG GLU GLY ARG LYS PRO TYR VAL ILE PRO PRO SEQRES 13 C 325 GLY GLY ALA SER PRO ILE GLY THR LEU GLY TYR VAL ARG SEQRES 14 C 325 ALA VAL GLY GLU ILE ALA THR GLN SER GLU VAL LYS PHE SEQRES 15 C 325 ASP SER ILE VAL VAL ALA ALA GLY SER GLY GLY THR LEU SEQRES 16 C 325 ALA GLY LEU SER LEU GLY LEU SER ILE LEU ASN GLU ASP SEQRES 17 C 325 ILE ARG PRO VAL GLY ILE ALA VAL GLY ARG PHE GLY GLU SEQRES 18 C 325 VAL MET THR SER LYS LEU ASP ASN LEU ILE LYS GLU ALA SEQRES 19 C 325 ALA GLU LEU LEU GLY VAL LYS VAL GLU VAL ARG PRO GLU SEQRES 20 C 325 LEU TYR ASP TYR SER PHE GLY GLU TYR GLY LYS ILE THR SEQRES 21 C 325 GLY GLU VAL ALA GLN ILE ILE ARG LYS VAL GLY THR ARG SEQRES 22 C 325 GLU GLY ILE ILE LEU ASP PRO VAL TYR THR GLY LYS ALA SEQRES 23 C 325 PHE TYR GLY LEU VAL ASP LEU ALA ARG LYS GLY GLU LEU SEQRES 24 C 325 GLY GLU LYS ILE LEU PHE ILE HIS THR GLY GLY ILE SER SEQRES 25 C 325 GLY THR PHE HIS TYR GLY ASP LYS LEU LEU SER LEU LEU HET SO4 A 701 5 HET PLP A 401 15 HET IPA A1747 4 HET SO4 B 702 5 HET PLP B 501 15 HET SO4 C 703 5 HET PLP C 601 15 HETNAM SO4 SULFATE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM IPA ISOPROPYL ALCOHOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN IPA 2-PROPANOL FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 PLP 3(C8 H10 N O6 P) FORMUL 6 IPA C3 H8 O FORMUL 11 HOH *94(H2 O) HELIX 1 1 HIS A 2 ALA A 10 1 9 HELIX 2 2 LEU A 27 GLY A 35 1 9 HELIX 3 3 ASP A 44 THR A 46 5 3 HELIX 4 4 ASN A 53 LYS A 68 1 16 HELIX 5 5 SER A 81 LEU A 94 1 14 HELIX 6 6 LYS A 109 MET A 118 1 10 HELIX 7 7 GLU A 132 LYS A 145 1 14 HELIX 8 8 PRO A 155 ALA A 159 5 5 HELIX 9 9 SER A 160 LEU A 165 1 6 HELIX 10 10 LEU A 165 SER A 178 1 14 HELIX 11 11 GLY A 192 LEU A 205 1 14 HELIX 12 12 VAL A 222 LEU A 238 1 17 HELIX 13 13 THR A 260 GLY A 275 1 16 HELIX 14 14 TYR A 282 LYS A 296 1 15 HELIX 15 15 GLY A 310 TYR A 317 1 8 HELIX 16 16 TYR A 317 SER A 323 1 7 HELIX 17 17 HIS B 2 ALA B 10 1 9 HELIX 18 18 LEU B 27 GLY B 35 1 9 HELIX 19 19 ASP B 44 THR B 46 5 3 HELIX 20 20 ASN B 53 GLY B 69 1 17 HELIX 21 21 SER B 81 LEU B 94 1 14 HELIX 22 22 LYS B 109 MET B 118 1 10 HELIX 23 23 LEU B 133 ARG B 146 1 14 HELIX 24 24 PRO B 155 ALA B 159 5 5 HELIX 25 25 SER B 160 SER B 178 1 19 HELIX 26 26 GLY B 192 ASN B 206 1 15 HELIX 27 27 GLY B 220 GLY B 239 1 20 HELIX 28 28 THR B 260 GLY B 275 1 16 HELIX 29 29 TYR B 282 LYS B 296 1 15 HELIX 30 30 GLY B 310 TYR B 317 1 8 HELIX 31 31 TYR B 317 LEU B 324 1 8 HELIX 32 32 HIS C 2 ALA C 10 1 9 HELIX 33 33 LEU C 27 GLU C 33 1 7 HELIX 34 34 ASP C 44 THR C 46 5 3 HELIX 35 35 ASN C 53 LYS C 68 1 16 HELIX 36 36 SER C 81 LEU C 94 1 14 HELIX 37 37 GLY C 110 MET C 118 1 9 HELIX 38 38 LEU C 133 GLU C 147 1 15 HELIX 39 39 PRO C 155 ALA C 159 5 5 HELIX 40 40 THR C 164 SER C 178 1 15 HELIX 41 41 GLY C 192 ASN C 206 1 15 HELIX 42 42 PHE C 219 GLY C 239 1 21 HELIX 43 43 THR C 260 GLY C 275 1 16 HELIX 44 44 TYR C 282 LYS C 296 1 15 HELIX 45 45 GLY C 310 TYR C 317 1 8 HELIX 46 46 TYR C 317 LEU C 324 1 8 SHEET 1 A 6 ILE A 24 TYR A 26 0 SHEET 2 A 6 ASP A 37 ARG A 42 -1 O ILE A 40 N GLN A 25 SHEET 3 A 6 LYS A 302 HIS A 307 1 O PHE A 305 N TYR A 39 SHEET 4 A 6 SER A 184 ALA A 189 1 N SER A 184 O LEU A 304 SHEET 5 A 6 ARG A 210 ALA A 215 1 O ILE A 214 N ALA A 189 SHEET 6 A 6 GLU A 247 ASP A 250 1 O TYR A 249 N ALA A 215 SHEET 1 B 4 GLU A 121 TYR A 125 0 SHEET 2 B 4 ASP A 97 ARG A 103 1 N LEU A 100 O GLU A 121 SHEET 3 B 4 VAL A 72 VAL A 76 1 N VAL A 73 O ASP A 97 SHEET 4 B 4 PRO A 151 ILE A 154 1 O TYR A 152 N ILE A 74 SHEET 1 C 6 ILE B 24 TYR B 26 0 SHEET 2 C 6 ASP B 37 ARG B 42 -1 O ILE B 40 N GLN B 25 SHEET 3 C 6 LYS B 302 HIS B 307 1 O ILE B 303 N TYR B 39 SHEET 4 C 6 SER B 184 ALA B 189 1 N VAL B 186 O LEU B 304 SHEET 5 C 6 ARG B 210 ALA B 215 1 O VAL B 212 N ILE B 185 SHEET 6 C 6 GLU B 247 ASP B 250 1 O GLU B 247 N GLY B 213 SHEET 1 D 4 GLU B 121 THR B 122 0 SHEET 2 D 4 ASP B 97 VAL B 101 1 N LEU B 100 O GLU B 121 SHEET 3 D 4 VAL B 72 VAL B 76 1 N VAL B 73 O ASP B 97 SHEET 4 D 4 PRO B 151 ILE B 154 1 O TYR B 152 N ILE B 74 SHEET 1 E 6 ILE C 24 TYR C 26 0 SHEET 2 E 6 ASP C 37 ARG C 42 -1 O ILE C 40 N GLN C 25 SHEET 3 E 6 LYS C 302 HIS C 307 1 O PHE C 305 N TYR C 39 SHEET 4 E 6 SER C 184 ALA C 189 1 N VAL C 186 O ILE C 306 SHEET 5 E 6 ARG C 210 ALA C 215 1 O VAL C 212 N ILE C 185 SHEET 6 E 6 GLU C 247 ASP C 250 1 O GLU C 247 N GLY C 213 SHEET 1 F 4 GLU C 121 TYR C 125 0 SHEET 2 F 4 ASP C 97 ARG C 103 1 N LEU C 100 O GLU C 121 SHEET 3 F 4 VAL C 72 ALA C 78 1 N VAL C 73 O ASP C 97 SHEET 4 F 4 PRO C 151 ILE C 154 1 O TYR C 152 N ILE C 74 LINK NZ LYS A 54 C4A PLP A 401 1555 1555 1.31 LINK NZ LYS B 54 C4A PLP B 501 1555 1555 1.31 LINK NZ LYS C 54 C4A PLP C 601 1555 1555 1.33 SITE 1 AC1 9 LYS A 54 SER A 81 ASN A 82 HIS A 83 SITE 2 AC1 9 TYR A 256 TYR A 282 PLP A 401 HOH A1752 SITE 3 AC1 9 HOH A1782 SITE 1 AC2 9 LYS B 54 SER B 81 ASN B 82 HIS B 83 SITE 2 AC2 9 GLY B 157 TYR B 256 TYR B 282 PLP B 501 SITE 3 AC2 9 HOH B 725 SITE 1 AC3 9 LYS C 54 SER C 81 ASN C 82 HIS C 83 SITE 2 AC3 9 GLY C 157 TYR C 256 TYR C 282 PLP C 601 SITE 3 AC3 9 HOH C 724 SITE 1 AC4 17 ASN A 53 LYS A 54 LYS A 57 ASN A 82 SITE 2 AC4 17 ALA A 189 GLY A 190 SER A 191 GLY A 192 SITE 3 AC4 17 GLY A 193 THR A 194 TYR A 282 THR A 308 SITE 4 AC4 17 GLY A 309 GLY A 310 SO4 A 701 HOH A1748 SITE 5 AC4 17 HOH A1769 SITE 1 AC5 16 ASN B 53 LYS B 54 LYS B 57 ASN B 82 SITE 2 AC5 16 ALA B 189 GLY B 190 SER B 191 GLY B 192 SITE 3 AC5 16 GLY B 193 THR B 194 TYR B 282 THR B 308 SITE 4 AC5 16 GLY B 309 GLY B 310 SO4 B 702 HOH B 705 SITE 1 AC6 17 ASN C 53 LYS C 54 LYS C 57 ASN C 82 SITE 2 AC6 17 ALA C 189 GLY C 190 SER C 191 GLY C 192 SITE 3 AC6 17 GLY C 193 THR C 194 TYR C 282 THR C 308 SITE 4 AC6 17 GLY C 309 GLY C 310 SO4 C 703 HOH C 712 SITE 5 AC6 17 HOH C 713 SITE 1 AC7 3 PHE A 12 ARG A 14 ARG C 14 CRYST1 122.340 122.340 115.031 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008174 0.004719 0.000000 0.00000 SCALE2 0.000000 0.009438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008693 0.00000