PDB Short entry for 1J3S HEADER ELECTRON TRANSPORT 12-FEB-03 1J3S TITLE SOLUTION STRUCTURE OF REDUCED RECOMBINANT HUMAN CYTOCHROME C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERROCYTOCHROME C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B1-21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS FERROCYTOCHROME C, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.-Y.JENG,J.-H.SHIU,Y.-H.TSAI,W.-J.CHUANG REVDAT 4 27-DEC-23 1J3S 1 REMARK REVDAT 3 23-FEB-22 1J3S 1 REMARK LINK REVDAT 2 24-FEB-09 1J3S 1 VERSN REVDAT 1 18-MAY-04 1J3S 0 JRNL AUTH W.-Y.JENG,J.-H.SHIU,Y.-H.TSAI,W.-J.CHUANG JRNL TITL SOLUTION STRUCTURE OF REDUCED RECOMBINANT HUMAN CYTOCHROME C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.-Y.JENG,J.-H.SHIU,Y.-H.TSAI,W.-J.CHUANG REMARK 1 TITL EXPRESSION AND CHARACTERIZATION OF RECOMBINANT HUMAN REMARK 1 TITL 2 CYTOCHROME C IN E. COLI REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1562 RESTRAINTS, 1449 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 80 REMARK 3 DIHEDRAL ANGLE RESTRAINTS,33 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 1J3S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000005594. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM CYTOCHROME C; 25MM PHOSPHATE REMARK 210 BUFFER; 2MM CYTOCHROME C; 25MM REMARK 210 PHOSPHATE BUFFER; 2MM CYTOCHROME REMARK 210 C U-15N; 25MM PHOSPHATE BUFFER; REMARK 210 2MM CYTOCHROME C U-15N; 25MM REMARK 210 PHOSPHATE BUFFER; 2MM CYTOCHROME REMARK 210 C U-15N, 13C; 25MM PHOSPHATE REMARK 210 BUFFER; 2MM CYTOCHROME C U-15N, REMARK 210 13C; 25MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 3D_15N-SEPARATED_NOESY; HNCBCA, REMARK 210 CBCA(CO)NH, HBHA(CBCA)NH, REMARK 210 HBHA(CBCACO)NH, HNHA; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.5.9, XWINNMR 2.6 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY REMARK 210 -DYNAMICAL SIMULATED ANNEALING REMARK 210 METHOD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 13 -64.25 -120.79 REMARK 500 1 GLU A 21 31.60 -149.15 REMARK 500 1 LYS A 22 -77.04 -97.59 REMARK 500 1 LYS A 27 -73.85 -82.11 REMARK 500 1 ASN A 31 103.02 -53.03 REMARK 500 1 GLN A 42 -48.32 -149.05 REMARK 500 1 TYR A 46 118.50 -160.01 REMARK 500 1 TYR A 48 177.26 -44.26 REMARK 500 1 THR A 49 88.62 -58.56 REMARK 500 1 ALA A 51 -72.51 -52.45 REMARK 500 1 GLU A 61 -74.12 -75.78 REMARK 500 1 ASN A 70 102.46 -171.84 REMARK 500 1 THR A 78 151.55 -42.58 REMARK 500 1 LYS A 87 86.90 -159.29 REMARK 500 1 ASN A 103 29.03 -156.82 REMARK 500 2 VAL A 20 31.80 -83.93 REMARK 500 2 GLU A 21 22.35 -160.49 REMARK 500 2 LYS A 27 -72.63 -150.72 REMARK 500 2 ASN A 31 100.22 -44.22 REMARK 500 2 LEU A 32 41.21 -82.25 REMARK 500 2 THR A 40 -174.84 -65.05 REMARK 500 2 GLN A 42 -56.46 -156.39 REMARK 500 2 SER A 47 92.24 -68.56 REMARK 500 2 TYR A 48 176.90 -46.17 REMARK 500 2 THR A 49 87.45 -59.67 REMARK 500 2 ALA A 50 -31.68 -35.71 REMARK 500 2 TRP A 59 107.28 -42.41 REMARK 500 2 GLU A 61 -75.99 -76.58 REMARK 500 2 ASN A 70 97.27 -170.98 REMARK 500 2 THR A 78 160.70 -49.94 REMARK 500 2 ILE A 81 58.36 -91.04 REMARK 500 2 LYS A 87 96.15 -67.13 REMARK 500 2 ALA A 96 -39.35 -39.98 REMARK 500 2 ASN A 103 45.08 -177.50 REMARK 500 3 LYS A 13 -65.46 -134.14 REMARK 500 3 ASN A 31 99.60 -52.40 REMARK 500 3 LYS A 39 -174.50 -64.68 REMARK 500 3 THR A 40 -169.95 -53.50 REMARK 500 3 GLN A 42 54.30 -161.82 REMARK 500 3 ALA A 43 169.66 -44.34 REMARK 500 3 TYR A 48 176.17 -44.19 REMARK 500 3 THR A 49 86.86 -59.26 REMARK 500 3 ALA A 51 -70.57 -49.26 REMARK 500 3 TRP A 59 103.23 -49.04 REMARK 500 3 ASN A 70 88.52 -176.00 REMARK 500 3 TYR A 74 -72.59 -83.37 REMARK 500 4 LYS A 13 -68.40 -122.44 REMARK 500 4 HIS A 18 74.12 -115.51 REMARK 500 4 LYS A 22 -86.67 -85.23 REMARK 500 4 LYS A 27 -73.15 -91.41 REMARK 500 REMARK 500 THIS ENTRY HAS 321 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 38 0.31 SIDE CHAIN REMARK 500 2 ARG A 38 0.25 SIDE CHAIN REMARK 500 2 ARG A 91 0.32 SIDE CHAIN REMARK 500 3 ARG A 91 0.13 SIDE CHAIN REMARK 500 4 ARG A 38 0.11 SIDE CHAIN REMARK 500 4 ARG A 91 0.16 SIDE CHAIN REMARK 500 5 ARG A 38 0.28 SIDE CHAIN REMARK 500 5 ARG A 91 0.15 SIDE CHAIN REMARK 500 6 ARG A 38 0.25 SIDE CHAIN REMARK 500 6 ARG A 91 0.30 SIDE CHAIN REMARK 500 7 ARG A 38 0.31 SIDE CHAIN REMARK 500 7 ARG A 91 0.21 SIDE CHAIN REMARK 500 8 ARG A 38 0.32 SIDE CHAIN REMARK 500 8 ARG A 91 0.16 SIDE CHAIN REMARK 500 9 ARG A 38 0.28 SIDE CHAIN REMARK 500 9 ARG A 91 0.23 SIDE CHAIN REMARK 500 10 ARG A 38 0.30 SIDE CHAIN REMARK 500 10 ARG A 91 0.22 SIDE CHAIN REMARK 500 11 ARG A 38 0.08 SIDE CHAIN REMARK 500 11 ARG A 91 0.30 SIDE CHAIN REMARK 500 12 ARG A 38 0.32 SIDE CHAIN REMARK 500 12 ARG A 91 0.24 SIDE CHAIN REMARK 500 13 ARG A 38 0.32 SIDE CHAIN REMARK 500 13 ARG A 91 0.10 SIDE CHAIN REMARK 500 14 ARG A 38 0.32 SIDE CHAIN REMARK 500 14 ARG A 91 0.15 SIDE CHAIN REMARK 500 15 ARG A 38 0.32 SIDE CHAIN REMARK 500 15 ARG A 91 0.19 SIDE CHAIN REMARK 500 16 ARG A 38 0.13 SIDE CHAIN REMARK 500 16 ARG A 91 0.30 SIDE CHAIN REMARK 500 18 ARG A 38 0.18 SIDE CHAIN REMARK 500 18 ARG A 91 0.23 SIDE CHAIN REMARK 500 19 ARG A 38 0.30 SIDE CHAIN REMARK 500 19 ARG A 91 0.13 SIDE CHAIN REMARK 500 20 ARG A 38 0.12 SIDE CHAIN REMARK 500 20 ARG A 91 0.32 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 105 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 105 NA 90.1 REMARK 620 3 HEC A 105 NB 88.9 90.1 REMARK 620 4 HEC A 105 NC 89.3 179.4 90.0 REMARK 620 5 HEC A 105 ND 90.3 89.7 179.1 90.1 REMARK 620 6 MET A 80 SD 178.1 90.4 89.3 90.2 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5406 RELATED DB: BMRB DBREF 1J3S A 1 104 UNP P99999 CYC_HUMAN 1 104 SEQRES 1 A 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE ILE MET LYS SEQRES 2 A 104 CYS SER GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 A 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG LYS SEQRES 4 A 104 THR GLY GLN ALA PRO GLY TYR SER TYR THR ALA ALA ASN SEQRES 5 A 104 LYS ASN LYS GLY ILE ILE TRP GLY GLU ASP THR LEU MET SEQRES 6 A 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 A 104 LYS MET ILE PHE VAL GLY ILE LYS LYS LYS GLU GLU ARG SEQRES 8 A 104 ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU HET HEC A 105 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 1 ASP A 2 CYS A 14 1 13 HELIX 2 2 THR A 49 GLY A 56 1 8 HELIX 3 3 GLY A 60 ASN A 70 1 11 HELIX 4 4 ASN A 70 ILE A 75 1 6 HELIX 5 5 LYS A 87 THR A 102 1 16 LINK SG CYS A 14 CAB HEC A 105 1555 1555 1.81 LINK SG CYS A 17 CAC HEC A 105 1555 1555 1.82 LINK NE2 HIS A 18 FE HEC A 105 1555 1555 1.99 LINK SD MET A 80 FE HEC A 105 1555 1555 2.38 SITE 1 AC1 19 CYS A 14 CYS A 17 HIS A 18 THR A 28 SITE 2 AC1 19 PRO A 30 LEU A 35 ARG A 38 THR A 40 SITE 3 AC1 19 TYR A 46 TYR A 48 THR A 49 TRP A 59 SITE 4 AC1 19 TYR A 67 LEU A 68 THR A 78 LYS A 79 SITE 5 AC1 19 MET A 80 PHE A 82 ARG A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000