PDB Short entry for 1JA2 HEADER HYDROLASE 29-MAY-01 1JA2 TITLE BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A POWDER TITLE 2 DIFFRACTION STUDY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C; ALLERGEN GAL D 4; GAL D IV; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POWDER DIFFRACTION, RIETVELD REFINEMENT, LYSOZYME, HYDROLASE EXPDTA POWDER DIFFRACTION AUTHOR R.B.VON DREELE REVDAT 4 16-AUG-23 1JA2 1 REMARK REVDAT 3 24-FEB-09 1JA2 1 VERSN REVDAT 2 30-NOV-01 1JA2 1 JRNL REVDAT 1 15-JUN-01 1JA2 0 JRNL AUTH R.B.VON DREELE JRNL TITL BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A JRNL TITL 2 POWDER DIFFRACTION STUDY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 57 1836 2001 JRNL REFN ISSN 0907-4449 JRNL PMID 11717496 JRNL DOI 10.1107/S0907444901015748 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.B.VON DREELE REMARK 1 TITL COMBINED RIETVELD AND STEREOCHEMICAL RESTRAINT REFINEMENT OF REMARK 1 TITL 2 A PROTEIN CRYSTAL STRUCTURE REMARK 1 REF J.APPL.CRYSTALLOGR. V. 32 1084 1999 REMARK 1 REFN ISSN 0021-8898 REMARK 1 DOI 10.1107/S002188989901064X REMARK 1 REFERENCE 2 REMARK 1 AUTH R.B.VON DREELE,P.W.STEPHENS,R.H.BLESSING,G.D.SMITH REMARK 1 TITL THE FIRST PROTEIN CRYSTAL STRUCTURE DETERMINED FROM REMARK 1 TITL 2 RESOLUTION X-RAY POWDER DIFFRACTION DATA: A VARIANT OF THE REMARK 1 TITL 3 T3R3 HUMAN INSULIN ZINC COMPLEX PRODUCED BY GRINDING REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 1549 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900013901 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 4 REMARK 4 1JA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013548. REMARK 250 REMARK 250 EXPERIMENTAL DETAILS REMARK 250 EXPERIMENT TYPE : POWDER DIFFRACTION REMARK 250 DATE OF DATA COLLECTION : 23-OCT-00 REMARK 250 REMARK 250 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 110 N ARG A 114 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 73.56 -112.01 REMARK 500 THR A 89 -34.80 -36.81 REMARK 500 ILE A 98 -9.99 -55.33 REMARK 500 ASN A 106 20.30 -70.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 5 0.29 SIDE CHAIN REMARK 500 ARG A 21 0.21 SIDE CHAIN REMARK 500 ARG A 45 0.29 SIDE CHAIN REMARK 500 ARG A 61 0.21 SIDE CHAIN REMARK 500 ARG A 68 0.18 SIDE CHAIN REMARK 500 ARG A 112 0.13 SIDE CHAIN REMARK 500 ARG A 114 0.28 SIDE CHAIN REMARK 500 ARG A 128 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JA4 RELATED DB: PDB REMARK 900 RELATED ID: 1JA6 RELATED DB: PDB REMARK 900 RELATED ID: 1JA7 RELATED DB: PDB DBREF 1JA2 A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HELIX 1 1 MET A 12 GLY A 16 5 5 HELIX 2 2 SER A 24 TRP A 28 5 5 HELIX 3 3 CYS A 30 PHE A 34 5 5 HELIX 4 4 SER A 81 SER A 85 5 5 HELIX 5 5 VAL A 92 ILE A 98 1 7 HELIX 6 6 VAL A 109 CYS A 115 1 7 SHEET 1 A 3 ASN A 44 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 N ASP A 52 O ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.02 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.01 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.02 CRYST1 78.569 78.569 38.513 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025965 0.00000