PDB Short entry for 1JBM HEADER STRUCTURAL GENOMICS 06-JUN-01 1JBM TITLE HEPTAMERIC CRYSTAL STRUCTURE OF MTH649, AN SM-LIKE ARCHAEAL PROTEIN TITLE 2 FROM METHANOBACTERIUM THERMAUTOTROPHICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SNRNP SM-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 FRAGMENT: FULL-LENGTH SM PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 145262; SOURCE 4 GENE: MTH0649 ORF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS RING-SHAPED HOMOHEPTAMER, ALL BETA-STRAND, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR C.MURA,D.EISENBERG REVDAT 4 16-AUG-23 1JBM 1 REMARK SEQADV REVDAT 3 24-FEB-09 1JBM 1 VERSN REVDAT 2 01-APR-03 1JBM 1 SOURCE REVDAT 1 25-MAR-03 1JBM 0 JRNL AUTH C.MURA,A.KOZHUKHOVSKY,M.GINGERY,M.PHILLIPS,D.EISENBERG JRNL TITL THE OLIGOMERIZATION AND LIGAND-BINDING PROPERTIES OF SM-LIKE JRNL TITL 2 ARCHAEAL PROTEINS (SMAPS) JRNL REF PROTEIN SCI. V. 12 832 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 12649441 JRNL DOI 10.1110/PS.0224703 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 43390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2161 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 BOND ANGLES (DEGREES) : 2.060 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.22 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.280 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1I8F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-4000, ACETATE, CITRATE BUFFER, REMARK 280 NACL, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE HOMOHEPTAMERIC RING FOUND IN REMARK 300 THE ASYMMETRIC UNIT (P1 CELL). THERE ARE NO ADDITIONAL SYMMETRY REMARK 300 TRANSFORMATIONS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 ARG A 8 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 GLN B 7 REMARK 465 ARG B 8 REMARK 465 VAL B 9 REMARK 465 LYS B 83 REMARK 465 LEU B 84 REMARK 465 ALA B 85 REMARK 465 ALA B 86 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 ASP C 3 REMARK 465 VAL C 4 REMARK 465 SER C 5 REMARK 465 SER C 6 REMARK 465 GLN C 7 REMARK 465 ARG C 8 REMARK 465 VAL C 9 REMARK 465 MET D 1 REMARK 465 ILE D 2 REMARK 465 ASP D 3 REMARK 465 VAL D 4 REMARK 465 SER D 5 REMARK 465 SER D 6 REMARK 465 GLN D 7 REMARK 465 ARG D 8 REMARK 465 VAL D 9 REMARK 465 ASN D 10 REMARK 465 GLY D 82 REMARK 465 LYS D 83 REMARK 465 LEU D 84 REMARK 465 ALA D 85 REMARK 465 ALA D 86 REMARK 465 MET E 1 REMARK 465 ILE E 2 REMARK 465 ASP E 3 REMARK 465 VAL E 4 REMARK 465 SER E 5 REMARK 465 SER E 6 REMARK 465 GLN E 7 REMARK 465 ARG E 8 REMARK 465 LEU E 84 REMARK 465 ALA E 85 REMARK 465 ALA E 86 REMARK 465 MET F 1 REMARK 465 ILE F 2 REMARK 465 ASP F 3 REMARK 465 VAL F 4 REMARK 465 SER F 5 REMARK 465 SER F 6 REMARK 465 GLN F 7 REMARK 465 ARG F 8 REMARK 465 VAL F 9 REMARK 465 ASN F 10 REMARK 465 LEU F 84 REMARK 465 ALA F 85 REMARK 465 ALA F 86 REMARK 465 MET G 1 REMARK 465 ILE G 2 REMARK 465 ASP G 3 REMARK 465 VAL G 4 REMARK 465 SER G 5 REMARK 465 SER G 6 REMARK 465 GLN G 7 REMARK 465 ARG G 8 REMARK 465 VAL G 9 REMARK 465 ASN G 10 REMARK 465 VAL G 11 REMARK 465 ALA G 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 33 O HOH A 1038 1.89 REMARK 500 N ARG D 13 O HOH D 2027 2.08 REMARK 500 O LYS G 31 O HOH G 2044 2.12 REMARK 500 NH1 ARG C 65 O HOH C 2027 2.13 REMARK 500 O HOH B 106 O HOH B 118 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG G 72 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 11 -14.66 -47.44 REMARK 500 LYS A 31 67.37 -45.95 REMARK 500 ASP A 33 3.34 17.12 REMARK 500 GLU B 61 111.08 -171.46 REMARK 500 ARG B 64 118.54 177.12 REMARK 500 ASP D 44 -165.88 -116.87 REMARK 500 ASP D 53 54.13 35.89 REMARK 500 ASP D 59 -47.04 60.99 REMARK 500 GLN F 12 -87.08 -91.27 REMARK 500 ASP F 59 4.23 57.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO G 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO G 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY E 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY F 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I81 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME SM-LIKE ARCHAEAL PROTEIN (IN REMARK 900 SPACEGROUP P21, NOT P1), DETERMINED INDEPENDENTLY BY ANOTHER GROUP REMARK 900 RELATED ID: 1I8F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A CLOSELY RELATED, HEPTAMERIC SM-LIKE ARCHAEAL REMARK 900 PROTEIN FROM PYROBACULUM AEROPHILUM REMARK 900 RELATED ID: 1B34 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE D1D2 HUMAN SM PROTEIN HETERODIMER REMARK 900 RELATED ID: 1D3B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE D3B HUMAN SM PROTEIN HETERODIMER DBREF 1JBM A 1 81 UNP O26745 RUXX_METTH 1 81 DBREF 1JBM B 1 81 UNP O26745 RUXX_METTH 1 81 DBREF 1JBM C 1 81 UNP O26745 RUXX_METTH 1 81 DBREF 1JBM D 1 81 UNP O26745 RUXX_METTH 1 81 DBREF 1JBM E 1 81 UNP O26745 RUXX_METTH 1 81 DBREF 1JBM F 1 81 UNP O26745 RUXX_METTH 1 81 DBREF 1JBM G 1 81 UNP O26745 RUXX_METTH 1 81 SEQADV 1JBM ARG A 81 UNP O26745 PRO 81 CONFLICT SEQADV 1JBM GLY A 82 UNP O26745 INSERTION SEQADV 1JBM LYS A 83 UNP O26745 INSERTION SEQADV 1JBM LEU A 84 UNP O26745 INSERTION SEQADV 1JBM ALA A 85 UNP O26745 INSERTION SEQADV 1JBM ALA A 86 UNP O26745 INSERTION SEQADV 1JBM ARG B 81 UNP O26745 PRO 81 CONFLICT SEQADV 1JBM GLY B 82 UNP O26745 INSERTION SEQADV 1JBM LYS B 83 UNP O26745 INSERTION SEQADV 1JBM LEU B 84 UNP O26745 INSERTION SEQADV 1JBM ALA B 85 UNP O26745 INSERTION SEQADV 1JBM ALA B 86 UNP O26745 INSERTION SEQADV 1JBM ARG C 81 UNP O26745 PRO 81 CONFLICT SEQADV 1JBM GLY C 82 UNP O26745 INSERTION SEQADV 1JBM LYS C 83 UNP O26745 INSERTION SEQADV 1JBM LEU C 84 UNP O26745 INSERTION SEQADV 1JBM ALA C 85 UNP O26745 INSERTION SEQADV 1JBM ALA C 86 UNP O26745 INSERTION SEQADV 1JBM ARG D 81 UNP O26745 PRO 81 CONFLICT SEQADV 1JBM GLY D 82 UNP O26745 INSERTION SEQADV 1JBM LYS D 83 UNP O26745 INSERTION SEQADV 1JBM LEU D 84 UNP O26745 INSERTION SEQADV 1JBM ALA D 85 UNP O26745 INSERTION SEQADV 1JBM ALA D 86 UNP O26745 INSERTION SEQADV 1JBM ARG E 81 UNP O26745 PRO 81 CONFLICT SEQADV 1JBM GLY E 82 UNP O26745 INSERTION SEQADV 1JBM LYS E 83 UNP O26745 INSERTION SEQADV 1JBM LEU E 84 UNP O26745 INSERTION SEQADV 1JBM ALA E 85 UNP O26745 INSERTION SEQADV 1JBM ALA E 86 UNP O26745 INSERTION SEQADV 1JBM ARG F 81 UNP O26745 PRO 81 CONFLICT SEQADV 1JBM GLY F 82 UNP O26745 INSERTION SEQADV 1JBM LYS F 83 UNP O26745 INSERTION SEQADV 1JBM LEU F 84 UNP O26745 INSERTION SEQADV 1JBM ALA F 85 UNP O26745 INSERTION SEQADV 1JBM ALA F 86 UNP O26745 INSERTION SEQADV 1JBM ARG G 81 UNP O26745 PRO 81 CONFLICT SEQADV 1JBM GLY G 82 UNP O26745 INSERTION SEQADV 1JBM LYS G 83 UNP O26745 INSERTION SEQADV 1JBM LEU G 84 UNP O26745 INSERTION SEQADV 1JBM ALA G 85 UNP O26745 INSERTION SEQADV 1JBM ALA G 86 UNP O26745 INSERTION SEQRES 1 A 86 MET ILE ASP VAL SER SER GLN ARG VAL ASN VAL GLN ARG SEQRES 2 A 86 PRO LEU ASP ALA LEU GLY ASN SER LEU ASN SER PRO VAL SEQRES 3 A 86 ILE ILE LYS LEU LYS GLY ASP ARG GLU PHE ARG GLY VAL SEQRES 4 A 86 LEU LYS SER PHE ASP LEU HIS MET ASN LEU VAL LEU ASN SEQRES 5 A 86 ASP ALA GLU GLU LEU GLU ASP GLY GLU VAL THR ARG ARG SEQRES 6 A 86 LEU GLY THR VAL LEU ILE ARG GLY ASP ASN ILE VAL TYR SEQRES 7 A 86 ILE SER ARG GLY LYS LEU ALA ALA SEQRES 1 B 86 MET ILE ASP VAL SER SER GLN ARG VAL ASN VAL GLN ARG SEQRES 2 B 86 PRO LEU ASP ALA LEU GLY ASN SER LEU ASN SER PRO VAL SEQRES 3 B 86 ILE ILE LYS LEU LYS GLY ASP ARG GLU PHE ARG GLY VAL SEQRES 4 B 86 LEU LYS SER PHE ASP LEU HIS MET ASN LEU VAL LEU ASN SEQRES 5 B 86 ASP ALA GLU GLU LEU GLU ASP GLY GLU VAL THR ARG ARG SEQRES 6 B 86 LEU GLY THR VAL LEU ILE ARG GLY ASP ASN ILE VAL TYR SEQRES 7 B 86 ILE SER ARG GLY LYS LEU ALA ALA SEQRES 1 C 86 MET ILE ASP VAL SER SER GLN ARG VAL ASN VAL GLN ARG SEQRES 2 C 86 PRO LEU ASP ALA LEU GLY ASN SER LEU ASN SER PRO VAL SEQRES 3 C 86 ILE ILE LYS LEU LYS GLY ASP ARG GLU PHE ARG GLY VAL SEQRES 4 C 86 LEU LYS SER PHE ASP LEU HIS MET ASN LEU VAL LEU ASN SEQRES 5 C 86 ASP ALA GLU GLU LEU GLU ASP GLY GLU VAL THR ARG ARG SEQRES 6 C 86 LEU GLY THR VAL LEU ILE ARG GLY ASP ASN ILE VAL TYR SEQRES 7 C 86 ILE SER ARG GLY LYS LEU ALA ALA SEQRES 1 D 86 MET ILE ASP VAL SER SER GLN ARG VAL ASN VAL GLN ARG SEQRES 2 D 86 PRO LEU ASP ALA LEU GLY ASN SER LEU ASN SER PRO VAL SEQRES 3 D 86 ILE ILE LYS LEU LYS GLY ASP ARG GLU PHE ARG GLY VAL SEQRES 4 D 86 LEU LYS SER PHE ASP LEU HIS MET ASN LEU VAL LEU ASN SEQRES 5 D 86 ASP ALA GLU GLU LEU GLU ASP GLY GLU VAL THR ARG ARG SEQRES 6 D 86 LEU GLY THR VAL LEU ILE ARG GLY ASP ASN ILE VAL TYR SEQRES 7 D 86 ILE SER ARG GLY LYS LEU ALA ALA SEQRES 1 E 86 MET ILE ASP VAL SER SER GLN ARG VAL ASN VAL GLN ARG SEQRES 2 E 86 PRO LEU ASP ALA LEU GLY ASN SER LEU ASN SER PRO VAL SEQRES 3 E 86 ILE ILE LYS LEU LYS GLY ASP ARG GLU PHE ARG GLY VAL SEQRES 4 E 86 LEU LYS SER PHE ASP LEU HIS MET ASN LEU VAL LEU ASN SEQRES 5 E 86 ASP ALA GLU GLU LEU GLU ASP GLY GLU VAL THR ARG ARG SEQRES 6 E 86 LEU GLY THR VAL LEU ILE ARG GLY ASP ASN ILE VAL TYR SEQRES 7 E 86 ILE SER ARG GLY LYS LEU ALA ALA SEQRES 1 F 86 MET ILE ASP VAL SER SER GLN ARG VAL ASN VAL GLN ARG SEQRES 2 F 86 PRO LEU ASP ALA LEU GLY ASN SER LEU ASN SER PRO VAL SEQRES 3 F 86 ILE ILE LYS LEU LYS GLY ASP ARG GLU PHE ARG GLY VAL SEQRES 4 F 86 LEU LYS SER PHE ASP LEU HIS MET ASN LEU VAL LEU ASN SEQRES 5 F 86 ASP ALA GLU GLU LEU GLU ASP GLY GLU VAL THR ARG ARG SEQRES 6 F 86 LEU GLY THR VAL LEU ILE ARG GLY ASP ASN ILE VAL TYR SEQRES 7 F 86 ILE SER ARG GLY LYS LEU ALA ALA SEQRES 1 G 86 MET ILE ASP VAL SER SER GLN ARG VAL ASN VAL GLN ARG SEQRES 2 G 86 PRO LEU ASP ALA LEU GLY ASN SER LEU ASN SER PRO VAL SEQRES 3 G 86 ILE ILE LYS LEU LYS GLY ASP ARG GLU PHE ARG GLY VAL SEQRES 4 G 86 LEU LYS SER PHE ASP LEU HIS MET ASN LEU VAL LEU ASN SEQRES 5 G 86 ASP ALA GLU GLU LEU GLU ASP GLY GLU VAL THR ARG ARG SEQRES 6 G 86 LEU GLY THR VAL LEU ILE ARG GLY ASP ASN ILE VAL TYR SEQRES 7 G 86 ILE SER ARG GLY LYS LEU ALA ALA HET ACY A1002 4 HET EDO C2004 4 HET EDO C2007 4 HET ACY C1001 4 HET EDO D2001 4 HET EDO D2006 4 HET ACY D1004 4 HET EDO E2005 4 HET EDO E2008 4 HET ACY E1003 4 HET EDO F2002 4 HET EDO F2003 4 HET EDO F2009 4 HET ACY F1005 4 HET EDO G2010 4 HET EDO G2011 4 HETNAM ACY ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 8 ACY 5(C2 H4 O2) FORMUL 9 EDO 11(C2 H6 O2) FORMUL 24 HOH *273(H2 O) HELIX 1 1 LEU A 15 ASN A 20 1 6 HELIX 2 2 LEU B 15 ASN B 20 1 6 HELIX 3 3 PRO C 14 LEU C 22 1 9 HELIX 4 4 ARG D 13 GLY D 19 1 7 HELIX 5 5 ASN D 20 LEU D 22 5 3 HELIX 6 6 LEU E 15 ASN E 20 1 6 HELIX 7 7 ARG F 13 GLY F 19 1 7 HELIX 8 8 ASN F 20 LEU F 22 5 3 HELIX 9 9 ARG G 13 ASN G 20 1 8 SHEET 1 A36 PRO A 25 LEU A 30 0 SHEET 2 A36 ARG A 34 PHE A 43 -1 O PHE A 36 N ILE A 28 SHEET 3 A36 LEU A 49 GLU A 58 -1 O GLU A 55 N ARG A 37 SHEET 4 A36 GLU A 61 ILE A 71 -1 O THR A 63 N GLU A 56 SHEET 5 A36 ILE G 76 SER G 80 -1 O ILE G 79 N LEU A 70 SHEET 6 A36 PRO G 25 LEU G 30 -1 N LYS G 29 O VAL G 77 SHEET 7 A36 GLU G 35 PHE G 43 -1 O PHE G 36 N ILE G 28 SHEET 8 A36 LEU G 49 GLU G 58 -1 O LEU G 57 N GLU G 35 SHEET 9 A36 GLU G 61 ILE G 71 -1 O THR G 63 N GLU G 56 SHEET 10 A36 ILE F 76 ARG F 81 -1 N ILE F 79 O LEU G 70 SHEET 11 A36 PRO F 25 LEU F 30 -1 N LYS F 29 O VAL F 77 SHEET 12 A36 ARG F 34 PHE F 43 -1 O PHE F 36 N ILE F 28 SHEET 13 A36 LEU F 49 GLU F 58 -1 O LEU F 57 N GLU F 35 SHEET 14 A36 GLU F 61 ILE F 71 -1 O GLU F 61 N GLU F 58 SHEET 15 A36 ILE E 76 SER E 80 -1 N ILE E 79 O LEU F 70 SHEET 16 A36 PRO E 25 LEU E 30 -1 N LYS E 29 O VAL E 77 SHEET 17 A36 GLU E 35 PHE E 43 -1 O PHE E 36 N ILE E 28 SHEET 18 A36 LEU E 49 GLU E 58 -1 O LEU E 57 N GLU E 35 SHEET 19 A36 GLU E 61 ILE E 71 -1 O THR E 63 N GLU E 56 SHEET 20 A36 ILE D 76 SER D 80 -1 N ILE D 79 O LEU E 70 SHEET 21 A36 PRO D 25 LEU D 30 -1 N LYS D 29 O VAL D 77 SHEET 22 A36 GLU D 35 PHE D 43 -1 O PHE D 36 N ILE D 28 SHEET 23 A36 LEU D 49 GLU D 58 -1 O LEU D 57 N GLU D 35 SHEET 24 A36 GLU D 61 ILE D 71 -1 O THR D 63 N GLU D 56 SHEET 25 A36 ILE C 76 ARG C 81 -1 N ILE C 79 O LEU D 70 SHEET 26 A36 PRO C 25 LEU C 30 -1 N LYS C 29 O VAL C 77 SHEET 27 A36 GLU C 35 PHE C 43 -1 O PHE C 36 N ILE C 28 SHEET 28 A36 LEU C 49 GLU C 58 -1 O LEU C 57 N GLU C 35 SHEET 29 A36 GLU C 61 ILE C 71 -1 O THR C 63 N GLU C 56 SHEET 30 A36 ILE B 76 ARG B 81 -1 N ILE B 79 O LEU C 70 SHEET 31 A36 PRO B 25 LEU B 30 -1 N LYS B 29 O VAL B 77 SHEET 32 A36 GLU B 35 PHE B 43 -1 O PHE B 36 N ILE B 28 SHEET 33 A36 LEU B 49 LEU B 57 -1 O LEU B 57 N GLU B 35 SHEET 34 A36 VAL B 62 ILE B 71 -1 O ILE B 71 N LEU B 49 SHEET 35 A36 ILE A 76 ARG A 81 -1 N ILE A 79 O LEU B 70 SHEET 36 A36 PRO A 25 LEU A 30 -1 N LYS A 29 O VAL A 77 SITE 1 AC1 5 VAL C 11 GLN C 12 PHE D 43 ASP D 44 SITE 2 AC1 5 LEU D 45 SITE 1 AC2 4 VAL F 39 ASN F 52 ASP F 53 HOH F2028 SITE 1 AC3 7 LYS E 29 VAL E 77 ACY E1003 HOH E2057 SITE 2 AC3 7 ARG F 34 GLU F 56 HOH F2023 SITE 1 AC4 4 VAL C 39 LYS C 41 ASN C 52 ASP C 53 SITE 1 AC5 2 GLY A 19 ASN E 23 SITE 1 AC6 4 LEU D 30 LYS D 31 ARG D 34 ASN D 75 SITE 1 AC7 6 LEU B 45 HIS B 46 HOH B 110 HIS C 46 SITE 2 AC7 6 ASN C 48 ARG C 72 SITE 1 AC8 7 VAL D 77 ACY D1004 HOH D2011 LEU E 30 SITE 2 AC8 7 LYS E 31 ASN E 75 HOH E2041 SITE 1 AC9 1 THR G 68 SITE 1 BC1 3 LEU F 45 HIS G 46 EDO G2011 SITE 1 BC2 7 LEU F 45 HIS F 46 ASN G 48 ARG G 72 SITE 2 BC2 7 EDO G2010 HOH G2017 HOH G2049 SITE 1 BC3 5 ALA C 17 SER C 21 SER C 80 ARG C 81 SITE 2 BC3 5 THR D 68 SITE 1 BC4 6 ALA A 17 SER A 21 SER A 80 HOH A1036 SITE 2 BC4 6 THR B 68 LEU B 70 SITE 1 BC5 4 LYS E 31 GLY E 32 ARG F 34 EDO F2003 SITE 1 BC6 4 GLY D 32 HOH D2011 HOH D2021 EDO E2008 SITE 1 BC7 4 GLN F 12 ARG F 13 SER G 42 PHE G 43 CRYST1 45.066 54.077 62.346 87.58 72.86 81.45 P 1 7 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022190 -0.003336 -0.006849 0.00000 SCALE2 0.000000 0.018700 0.000031 0.00000 SCALE3 0.000000 0.000000 0.016785 0.00000