PDB Short entry for 1JNS HEADER ISOMERASE 25-JUL-01 1JNS TITLE NMR STRUCTURE OF THE E. COLI PEPTIDYL-PROLYL CIS/TRANS-ISOMERASE TITLE 2 PARVULIN 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PARVULIN, PPIASE C, ROTAMASE C; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PARA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSEP612 KEYWDS ALPHA-BETA SANDWICH, CIS PEPTIDE BOND, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR A.KUEHLEWEIN,G.VOLL,B.SCHELBERT,H.KESSLER,G.FISCHER,J.U.RAHFELD, AUTHOR 2 G.GEMMECKER REVDAT 4 23-FEB-22 1JNS 1 REMARK REVDAT 3 24-FEB-09 1JNS 1 VERSN REVDAT 2 05-APR-05 1JNS 1 JRNL REVDAT 1 17-JUN-03 1JNS 0 JRNL AUTH A.KUEHLEWEIN,G.VOLL,B.H.ALVAREZ,H.KESSLER,G.FISCHER, JRNL AUTH 2 J.U.RAHFELD,G.GEMMECKER JRNL TITL SOLUTION STRUCTURE OF ESCHERICHIA COLI PAR10: THE PROTOTYPIC JRNL TITL 2 MEMBER OF THE PARVULIN FAMILY OF PEPTIDYL-PROLYL CIS/TRANS JRNL TITL 3 ISOMERASES. JRNL REF PROTEIN SCI. V. 13 2378 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15322281 JRNL DOI 10.1110/PS.04756704 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER, KARLSRUHE (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1097 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 68 DIHEDRAL RESTRAINTS FOR CSI- REMARK 3 DERIVED HELICAL REGIONS, 42 3J(HN,HA) RESTRAINTS, 30 DISTANCE REMARK 3 CONSTRAINTS FOR HYDROGEN BONDS BASED ON CSI AND MEXICO DATA. REMARK 4 REMARK 4 1JNS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000013982. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297.6 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-15N] PARVULIN 10, 10 REMARK 210 MM PHOSPHATE BUFFER, PH 6.0, 100 REMARK 210 MM KCL, 1 MM EDTA, 1 MM DTE; 0.8 REMARK 210 MM [U-13C, 15N] PARVULIN 10, 10 REMARK 210 MM PHOSPHATE BUFFER, PH 6.0, 100 REMARK 210 MM KCL, 1 MM EDTA, 1 MM DTE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNHA; 3D_15N-SEPARATED_NOESY; REMARK 210 3D_13C-SEPARATED_NOESY; 3D_13C/ REMARK 210 13C-SEPARATED_NOESY; 3D_13C/15N- REMARK 210 SEPARATED_NOESY; 2D_MEXICO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, TRIAD 6.6, ARIA REMARK 210 0.53, CNS 0.5, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RAMACHANDRAN ENERGY AND REMARK 210 NOE VIOLATIONS IN STRUCTURED REMARK 210 REGIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 77 O HIS A 84 1.49 REMARK 500 O LEU A 89 H ARG A 91 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 28 104.65 83.92 REMARK 500 1 ASP A 29 70.48 -175.08 REMARK 500 1 ILE A 39 31.57 38.02 REMARK 500 1 ASP A 48 71.96 -170.82 REMARK 500 1 MET A 57 -77.75 -103.61 REMARK 500 1 SER A 67 -66.21 -93.43 REMARK 500 1 PRO A 73 109.60 -51.07 REMARK 500 1 TYR A 90 -55.35 62.66 REMARK 500 2 ALA A 28 105.49 77.46 REMARK 500 2 ASP A 29 73.17 -175.37 REMARK 500 2 ILE A 39 39.28 38.46 REMARK 500 2 ASP A 48 62.45 -167.93 REMARK 500 2 ARG A 53 -138.60 -63.60 REMARK 500 2 SER A 67 -62.04 -93.95 REMARK 500 2 VAL A 70 47.19 20.19 REMARK 500 2 LEU A 71 -40.25 -167.17 REMARK 500 2 PRO A 73 95.49 -67.48 REMARK 500 2 TYR A 90 -76.93 54.07 REMARK 500 3 LYS A 12 -17.26 80.61 REMARK 500 3 ALA A 28 170.33 79.71 REMARK 500 3 ASP A 29 85.91 109.48 REMARK 500 3 ILE A 39 29.75 38.86 REMARK 500 3 GLN A 54 -41.89 83.50 REMARK 500 3 GLN A 56 -89.24 35.25 REMARK 500 3 MET A 57 -71.74 -1.22 REMARK 500 3 PRO A 69 -179.65 -61.73 REMARK 500 3 TYR A 90 -24.68 82.33 REMARK 500 3 ARG A 91 164.80 55.99 REMARK 500 4 ALA A 28 172.24 79.83 REMARK 500 4 ASP A 29 78.09 114.73 REMARK 500 4 ILE A 39 46.18 32.04 REMARK 500 4 ASP A 48 70.31 -173.83 REMARK 500 4 ARG A 53 -84.19 -50.43 REMARK 500 4 GLN A 54 133.40 -177.35 REMARK 500 4 VAL A 58 133.85 -173.04 REMARK 500 4 SER A 67 -67.42 -96.58 REMARK 500 4 TYR A 90 -85.63 30.41 REMARK 500 5 ALA A 28 102.56 81.19 REMARK 500 5 ASP A 29 67.05 -175.74 REMARK 500 5 ILE A 39 49.06 31.98 REMARK 500 5 ASP A 48 70.96 -173.95 REMARK 500 5 ARG A 53 57.20 -69.25 REMARK 500 5 GLN A 54 39.32 27.48 REMARK 500 5 GLN A 56 -62.48 -155.72 REMARK 500 5 SER A 67 -80.06 -99.61 REMARK 500 5 VAL A 70 -174.89 29.40 REMARK 500 5 LEU A 71 41.67 23.60 REMARK 500 5 PRO A 73 103.84 -47.42 REMARK 500 5 LEU A 89 -155.25 -139.71 REMARK 500 5 TYR A 90 -89.00 32.82 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 16 GLN A 56 10.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JNT RELATED DB: PDB REMARK 900 SAME PROTEIN, MINIMIZED AVERAGE STRUCTURE DBREF 1JNS A 1 92 UNP P0A9L5 PPIC_ECOLI 1 92 SEQRES 1 A 92 ALA LYS THR ALA ALA ALA LEU HIS ILE LEU VAL LYS GLU SEQRES 2 A 92 GLU LYS LEU ALA LEU ASP LEU LEU GLU GLN ILE LYS ASN SEQRES 3 A 92 GLY ALA ASP PHE GLY LYS LEU ALA LYS LYS HIS SER ILE SEQRES 4 A 92 CYS PRO SER GLY LYS ARG GLY GLY ASP LEU GLY GLU PHE SEQRES 5 A 92 ARG GLN GLY GLN MET VAL PRO ALA PHE ASP LYS VAL VAL SEQRES 6 A 92 PHE SER CYS PRO VAL LEU GLU PRO THR GLY PRO LEU HIS SEQRES 7 A 92 THR GLN PHE GLY TYR HIS ILE ILE LYS VAL LEU TYR ARG SEQRES 8 A 92 ASN HELIX 1 1 GLU A 14 GLY A 27 1 14 HELIX 2 2 PHE A 30 LYS A 36 1 7 HELIX 3 3 GLY A 43 GLY A 47 5 5 HELIX 4 4 ALA A 60 SER A 67 1 8 SHEET 1 A 4 GLY A 50 ARG A 53 0 SHEET 2 A 4 THR A 3 VAL A 11 -1 N ALA A 4 O PHE A 52 SHEET 3 A 4 GLY A 82 LEU A 89 -1 N TYR A 83 O VAL A 11 SHEET 4 A 4 THR A 74 THR A 79 -1 O THR A 74 N ILE A 86 CISPEP 1 GLY A 75 PRO A 76 1 -0.23 CISPEP 2 GLY A 75 PRO A 76 2 0.06 CISPEP 3 GLY A 75 PRO A 76 3 1.85 CISPEP 4 GLY A 75 PRO A 76 4 1.70 CISPEP 5 GLY A 75 PRO A 76 5 2.07 CISPEP 6 GLY A 75 PRO A 76 6 -0.22 CISPEP 7 GLY A 75 PRO A 76 7 1.64 CISPEP 8 GLY A 75 PRO A 76 8 0.16 CISPEP 9 GLY A 75 PRO A 76 9 -1.70 CISPEP 10 GLY A 75 PRO A 76 10 -1.43 CISPEP 11 GLY A 75 PRO A 76 11 -0.28 CISPEP 12 GLY A 75 PRO A 76 12 3.44 CISPEP 13 GLY A 75 PRO A 76 13 -0.78 CISPEP 14 GLY A 75 PRO A 76 14 -0.85 CISPEP 15 GLY A 75 PRO A 76 15 0.98 CISPEP 16 GLY A 75 PRO A 76 16 -0.41 CISPEP 17 GLY A 75 PRO A 76 17 -0.35 CISPEP 18 GLY A 75 PRO A 76 18 1.11 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000