PDB Short entry for 1JNX HEADER GENE REGULATION 26-JUL-01 1JNX TITLE CRYSTAL STRUCTURE OF THE BRCT REPEAT REGION FROM THE BREAST CANCER TITLE 2 ASSOCIATED PROTEIN, BRCA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 1646-1859; COMPND 5 SYNONYM: BRCA1; BREAST CANCER 1, EARLY ONSET; BREAST/OVARIAN CANCER COMPND 6 SUSCEPTIBILITY PROTEIN BRCA1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRCA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BRCT, CANCER, GENE EXPRESSION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR R.S.WILLIAMS,R.GREEN,J.N.M.GLOVER REVDAT 5 07-FEB-24 1JNX 1 REMARK LINK REVDAT 4 05-APR-17 1JNX 1 REMARK VERSN REVDAT 3 24-FEB-09 1JNX 1 VERSN REVDAT 2 01-APR-03 1JNX 1 JRNL REVDAT 1 21-SEP-01 1JNX 0 JRNL AUTH R.S.WILLIAMS,R.GREEN,J.N.GLOVER JRNL TITL CRYSTAL STRUCTURE OF THE BRCT REPEAT REGION FROM THE BREAST JRNL TITL 2 CANCER-ASSOCIATED PROTEIN BRCA1. JRNL REF NAT.STRUCT.BIOL. V. 8 838 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11573086 JRNL DOI 10.1038/NSB1001-838 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS PARAMETERS FOR REFMAC: GROUP- CHAIN REMARK 3 X,N,&W, ALL ATOMS: T TENSOR: T11: 0.3885 T22: 0.2528 T33: 0.0541 REMARK 3 T12: 0.2422 T13: -0.0261 T23: 0.0567 L TENSOR: L11: 15.0684 L22: REMARK 3 14.6911 L33: 2.1404 L12: -13.6906 L13: 4.0117 L23: -2.8964 S REMARK 3 TENSOR: S11: 1.1964 S12: 1.4251 S13: 0.4307 S21: -1.4475 S22: - REMARK 3 1.3203 S23: -0.2414 S31: 0.2422 S32: 0.5625 S33: 0.1239 REMARK 4 REMARK 4 1JNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000013987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULPHATE, NICKEL SULPHATE, REMARK 280 CALCIUM CHLORIDE, TRIS, PH 8.5,VAPOR DIFFUSION, HANGING DROP AT REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.70367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.40733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.05550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 101.75917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.35183 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.70367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.40733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 101.75917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.05550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.35183 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL X 1646 REMARK 465 ASN X 1647 REMARK 465 LYS X 1648 REMARK 465 GLU X 1694 REMARK 465 GLU X 1817 REMARK 465 ASP X 1818 REMARK 465 ASN X 1819 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG X1649 CG CD NE CZ NH1 NH2 REMARK 470 ARG X1670 CG CD NE CZ NH1 NH2 REMARK 470 LYS X1671 CG CD CE NZ REMARK 470 ARG X1726 CG CD NE CZ NH1 NH2 REMARK 470 ASP X1733 CG OD1 OD2 REMARK 470 GLU X1735 CG CD OE1 OE2 REMARK 470 ARG X1737 CG CD NE CZ NH1 NH2 REMARK 470 ARG X1744 CG CD NE CZ NH1 NH2 REMARK 470 ASN X1745 CG OD1 ND2 REMARK 470 HIS X1746 CG ND1 CD2 CE1 NE2 REMARK 470 GLN X1747 CG CD OE1 NE2 REMARK 470 LYS X1750 CG CD CE NZ REMARK 470 ARG X1751 CG CD NE CZ NH1 NH2 REMARK 470 GLU X1754 CG CD OE1 OE2 REMARK 470 GLN X1756 CG CD OE1 NE2 REMARK 470 ASP X1757 CG OD1 OD2 REMARK 470 ARG X1758 CG CD NE CZ NH1 NH2 REMARK 470 LYS X1793 CG CD CE NZ REMARK 470 LEU X1800 CG CD1 CD2 REMARK 470 THR X1802 OG1 CG2 REMARK 470 TRP X1815 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP X1815 CZ3 CH2 REMARK 470 THR X1816 OG1 CG2 REMARK 470 PHE X1821 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN X1846 CG CD OE1 NE2 REMARK 470 GLU X1849 CG CD OE1 OE2 REMARK 470 ASP X1851 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP X 1813 N TRP X 1815 1.97 REMARK 500 O ARG X 1737 O HIS X 1746 2.14 REMARK 500 OD1 ASP X 1739 N VAL X 1741 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET X 1663 SD MET X 1663 10665 2.05 REMARK 500 O HOH X 2036 O HOH X 2036 11555 2.06 REMARK 500 CE MET X 1663 CE MET X 1663 10665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X1778 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP X1813 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X1739 -63.29 -161.30 REMARK 500 VAL X1740 -15.13 -174.07 REMARK 500 ARG X1744 -89.43 -12.39 REMARK 500 ASN X1745 -97.97 -20.30 REMARK 500 HIS X1746 115.05 -1.18 REMARK 500 GLN X1747 53.40 -101.12 REMARK 500 GLN X1756 -31.83 180.00 REMARK 500 ASP X1757 -74.09 -66.44 REMARK 500 ARG X1762 -82.26 1.43 REMARK 500 THR X1773 -114.08 -101.17 REMARK 500 ASN X1774 25.07 -55.05 REMARK 500 MET X1775 119.18 -160.77 REMARK 500 ASP X1813 -76.34 -58.69 REMARK 500 ALA X1814 -4.13 -30.11 REMARK 500 CYS X1847 113.42 -38.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI X1901 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X1673 NE2 REMARK 620 2 HIS X1805 NE2 97.2 REMARK 620 3 HOH X2001 O 75.3 78.9 REMARK 620 4 HOH X2002 O 105.6 99.3 178.1 REMARK 620 5 HOH X2081 O 164.1 86.9 90.5 88.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI X 1901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CDZ RELATED DB: PDB REMARK 900 RELATED ID: 1IMO RELATED DB: PDB REMARK 900 RELATED ID: 1IN1 RELATED DB: PDB DBREF 1JNX X 1646 1859 UNP P38398 BRCA1_HUMAN 1646 1859 SEQRES 1 X 214 VAL ASN LYS ARG MET SER MET VAL VAL SER GLY LEU THR SEQRES 2 X 214 PRO GLU GLU PHE MET LEU VAL TYR LYS PHE ALA ARG LYS SEQRES 3 X 214 HIS HIS ILE THR LEU THR ASN LEU ILE THR GLU GLU THR SEQRES 4 X 214 THR HIS VAL VAL MET LYS THR ASP ALA GLU PHE VAL CYS SEQRES 5 X 214 GLU ARG THR LEU LYS TYR PHE LEU GLY ILE ALA GLY GLY SEQRES 6 X 214 LYS TRP VAL VAL SER TYR PHE TRP VAL THR GLN SER ILE SEQRES 7 X 214 LYS GLU ARG LYS MET LEU ASN GLU HIS ASP PHE GLU VAL SEQRES 8 X 214 ARG GLY ASP VAL VAL ASN GLY ARG ASN HIS GLN GLY PRO SEQRES 9 X 214 LYS ARG ALA ARG GLU SER GLN ASP ARG LYS ILE PHE ARG SEQRES 10 X 214 GLY LEU GLU ILE CYS CYS TYR GLY PRO PHE THR ASN MET SEQRES 11 X 214 PRO THR ASP GLN LEU GLU TRP MET VAL GLN LEU CYS GLY SEQRES 12 X 214 ALA SER VAL VAL LYS GLU LEU SER SER PHE THR LEU GLY SEQRES 13 X 214 THR GLY VAL HIS PRO ILE VAL VAL VAL GLN PRO ASP ALA SEQRES 14 X 214 TRP THR GLU ASP ASN GLY PHE HIS ALA ILE GLY GLN MET SEQRES 15 X 214 CYS GLU ALA PRO VAL VAL THR ARG GLU TRP VAL LEU ASP SEQRES 16 X 214 SER VAL ALA LEU TYR GLN CYS GLN GLU LEU ASP THR TYR SEQRES 17 X 214 LEU ILE PRO GLN ILE PRO HET NI X1901 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ FORMUL 3 HOH *115(H2 O) HELIX 1 1 THR X 1658 HIS X 1673 1 16 HELIX 2 2 THR X 1700 GLY X 1709 1 10 HELIX 3 3 TYR X 1716 ARG X 1726 1 11 HELIX 4 4 ASN X 1730 GLU X 1735 1 6 HELIX 5 5 GLN X 1747 SER X 1755 1 9 HELIX 6 6 PRO X 1776 CYS X 1787 1 12 HELIX 7 7 GLU X 1794 PHE X 1798 5 5 HELIX 8 8 ALA X 1823 CYS X 1828 1 6 HELIX 9 9 ARG X 1835 TYR X 1845 1 11 HELIX 10 10 GLU X 1849 TYR X 1853 5 5 SHEET 1 A 4 THR X1675 LEU X1676 0 SHEET 2 A 4 SER X1651 SER X1655 1 N MET X1652 O THR X1675 SHEET 3 A 4 HIS X1686 MET X1689 1 N HIS X1686 O SER X1651 SHEET 4 A 4 TRP X1712 SER X1715 1 O TRP X1712 N VAL X1687 SHEET 1 B 4 SER X1790 VAL X1791 0 SHEET 2 B 4 LEU X1764 CYS X1768 1 O LEU X1764 N SER X1790 SHEET 3 B 4 HIS X1805 VAL X1810 1 O HIS X1805 N GLU X1765 SHEET 4 B 4 VAL X1832 THR X1834 1 N VAL X1833 O VAL X1808 LINK NE2 HIS X1673 NI NI X1901 5564 1555 2.05 LINK NE2 HIS X1805 NI NI X1901 1555 1555 2.28 LINK NI NI X1901 O HOH X2001 1555 1555 2.19 LINK NI NI X1901 O HOH X2002 1555 1555 2.14 LINK NI NI X1901 O HOH X2081 1555 1555 2.01 SITE 1 AC1 5 HIS X1673 HIS X1805 HOH X2001 HOH X2002 SITE 2 AC1 5 HOH X2081 CRYST1 114.844 114.844 122.111 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008707 0.005027 0.000000 0.00000 SCALE2 0.000000 0.010055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008189 0.00000