PDB Short entry for 1JQA HEADER OXIDOREDUCTASE 04-AUG-01 1JQA TITLE BACILLUS STEAROTHERMOPHILUS GLYCEROL DEHYDROGENASE COMPLEX WITH TITLE 2 GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: GLDA OR GLD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM103; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK233-2 KEYWDS OXIDOREDUCTASE, NAD, GLYCEROL METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR S.N.RUZHEINIKOV,J.BURKE,S.SEDELNIKOVA,P.J.BAKER,R.TAYLOR, AUTHOR 2 P.A.BULLOUGH,N.M.MUIR,M.G.GORE,D.W.RICE REVDAT 8 16-AUG-23 1JQA 1 REMARK REVDAT 7 27-OCT-21 1JQA 1 REMARK SEQADV LINK REVDAT 6 16-NOV-11 1JQA 1 HETATM REVDAT 5 13-JUL-11 1JQA 1 VERSN REVDAT 4 24-FEB-09 1JQA 1 VERSN REVDAT 3 01-APR-03 1JQA 1 JRNL REVDAT 2 27-MAR-02 1JQA 1 TITLE REVDAT 1 03-OCT-01 1JQA 0 JRNL AUTH S.N.RUZHEINIKOV,J.BURKE,S.SEDELNIKOVA,P.J.BAKER,R.TAYLOR, JRNL AUTH 2 P.A.BULLOUGH,N.M.MUIR,M.G.GORE,D.W.RICE JRNL TITL GLYCEROL DEHYDROGENASE. STRUCTURE, SPECIFICITY, AND JRNL TITL 2 MECHANISM OF A FAMILY III POLYOL DEHYDROGENASE. JRNL REF STRUCTURE V. 9 789 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11566129 JRNL DOI 10.1016/S0969-2126(01)00645-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.BURKE,S.N.RUZHEINIKOV,S.SEDELNIKOVA,P.J.BAKER,D.HOLMES, REMARK 1 AUTH 2 N.M.MUIR,M.G.GORE,D.W.RICE REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND QUATERNARY STRUCTURE REMARK 1 TITL 2 ANALYSIS OF A GLYCEROL DEHYDROGENASE S305C MUTANT FROM REMARK 1 TITL 3 BACILLUS STEAROTHEMOPHILUS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 165 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900014918 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1192 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.465 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.68 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.050 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.480 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 6.400 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.160; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, ZNCL2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.95500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.75000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 52.95500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 74.75000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.95500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 74.75000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 52.95500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 74.75000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.95500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 74.75000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 52.95500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 74.75000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 52.95500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 74.75000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.95500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.95500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN OCTAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: Y, -X, Z; -X, Y, - REMARK 300 Z; X, -Y, -Z; Y, X, -Z; -X, -Y, -Z; -Y, X, Z; -Y, -X, -Z; REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 100030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -449.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 372 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 GLY A 137 REMARK 465 HIS A 368 REMARK 465 ARG A 369 REMARK 465 LYS A 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 435 O HOH A 508 2.10 REMARK 500 O HOH A 435 O HOH A 536 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 28 -85.18 -40.57 REMARK 500 ALA A 46 -20.33 -142.64 REMARK 500 ALA A 120 64.41 -100.71 REMARK 500 PHE A 139 135.13 -38.53 REMARK 500 THR A 240 -64.16 -109.51 REMARK 500 ALA A 253 -122.43 -148.68 REMARK 500 GLU A 366 23.76 -70.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 371 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 173 OD1 REMARK 620 2 HIS A 256 NE2 102.5 REMARK 620 3 HIS A 274 NE2 97.7 110.9 REMARK 620 4 GOL A 401 O1 103.4 89.8 146.4 REMARK 620 5 GOL A 401 O3 99.1 93.1 146.8 4.8 REMARK 620 6 GOL A 401 O2 165.1 92.4 75.8 77.2 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 372 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 268 OE2 REMARK 620 2 GLU A 268 OE2 95.9 REMARK 620 3 HIS A 271 NE2 106.9 117.2 REMARK 620 4 HIS A 271 NE2 117.3 107.1 111.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JQ5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH NAD. REMARK 900 RELATED ID: 1JPU RELATED DB: PDB REMARK 900 1JPU CONTAINS THE SAME PROTEIN NATIVE FORM. DBREF 1JQA A 1 370 UNP P32816 GLDA_BACST 1 370 SEQADV 1JQA CYS A 305 UNP P32816 SER 305 ENGINEERED MUTATION SEQRES 1 A 370 MET ALA ALA GLU ARG VAL PHE ILE SER PRO ALA LYS TYR SEQRES 2 A 370 VAL GLN GLY LYS ASN VAL ILE THR LYS ILE ALA ASN TYR SEQRES 3 A 370 LEU GLU GLY ILE GLY ASN LYS THR VAL VAL ILE ALA ASP SEQRES 4 A 370 GLU ILE VAL TRP LYS ILE ALA GLY HIS THR ILE VAL ASN SEQRES 5 A 370 GLU LEU LYS LYS GLY ASN ILE ALA ALA GLU GLU VAL VAL SEQRES 6 A 370 PHE SER GLY GLU ALA SER ARG ASN GLU VAL GLU ARG ILE SEQRES 7 A 370 ALA ASN ILE ALA ARG LYS ALA GLU ALA ALA ILE VAL ILE SEQRES 8 A 370 GLY VAL GLY GLY GLY LYS THR LEU ASP THR ALA LYS ALA SEQRES 9 A 370 VAL ALA ASP GLU LEU ASP ALA TYR ILE VAL ILE VAL PRO SEQRES 10 A 370 THR ALA ALA SER THR ASP ALA PRO THR SER ALA LEU SER SEQRES 11 A 370 VAL ILE TYR SER ASP ASP GLY VAL PHE GLU SER TYR ARG SEQRES 12 A 370 PHE TYR LYS LYS ASN PRO ASP LEU VAL LEU VAL ASP THR SEQRES 13 A 370 LYS ILE ILE ALA ASN ALA PRO PRO ARG LEU LEU ALA SER SEQRES 14 A 370 GLY ILE ALA ASP ALA LEU ALA THR TRP VAL GLU ALA ARG SEQRES 15 A 370 SER VAL ILE LYS SER GLY GLY LYS THR MET ALA GLY GLY SEQRES 16 A 370 ILE PRO THR ILE ALA ALA GLU ALA ILE ALA GLU LYS CYS SEQRES 17 A 370 GLU GLN THR LEU PHE LYS TYR GLY LYS LEU ALA TYR GLU SEQRES 18 A 370 SER VAL LYS ALA LYS VAL VAL THR PRO ALA LEU GLU ALA SEQRES 19 A 370 VAL VAL GLU ALA ASN THR LEU LEU SER GLY LEU GLY PHE SEQRES 20 A 370 GLU SER GLY GLY LEU ALA ALA ALA HIS ALA ILE HIS ASN SEQRES 21 A 370 GLY PHE THR ALA LEU GLU GLY GLU ILE HIS HIS LEU THR SEQRES 22 A 370 HIS GLY GLU LYS VAL ALA PHE GLY THR LEU VAL GLN LEU SEQRES 23 A 370 ALA LEU GLU GLU HIS SER GLN GLN GLU ILE GLU ARG TYR SEQRES 24 A 370 ILE GLU LEU TYR LEU CYS LEU ASP LEU PRO VAL THR LEU SEQRES 25 A 370 GLU ASP ILE LYS LEU LYS ASP ALA SER ARG GLU ASP ILE SEQRES 26 A 370 LEU LYS VAL ALA LYS ALA ALA THR ALA GLU GLY GLU THR SEQRES 27 A 370 ILE HIS ASN ALA PHE ASN VAL THR ALA ASP ASP VAL ALA SEQRES 28 A 370 ASP ALA ILE PHE ALA ALA ASP GLN TYR ALA LYS ALA TYR SEQRES 29 A 370 LYS GLU LYS HIS ARG LYS HET ZN A 371 1 HET ZN A 372 1 HET GOL A 401 12 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *174(H2 O) HELIX 1 1 ASN A 18 THR A 21 5 4 HELIX 2 2 LYS A 22 LEU A 27 1 6 HELIX 3 3 GLU A 28 GLY A 31 5 4 HELIX 4 4 ASP A 39 ALA A 46 1 8 HELIX 5 5 ALA A 46 LYS A 56 1 11 HELIX 6 6 SER A 71 GLU A 86 1 16 HELIX 7 7 GLY A 95 ASP A 110 1 16 HELIX 8 8 THR A 156 ALA A 162 1 7 HELIX 9 9 PRO A 163 GLY A 188 1 26 HELIX 10 10 THR A 198 GLY A 216 1 19 HELIX 11 11 TYR A 215 ALA A 225 1 11 HELIX 12 12 THR A 229 GLY A 251 1 23 HELIX 13 13 ALA A 253 PHE A 262 1 10 HELIX 14 14 THR A 263 LEU A 265 5 3 HELIX 15 15 GLY A 267 LEU A 272 5 6 HELIX 16 16 THR A 273 GLU A 289 1 17 HELIX 17 17 SER A 292 LEU A 306 1 15 HELIX 18 18 SER A 321 THR A 333 1 13 HELIX 19 19 GLU A 337 ALA A 342 5 6 HELIX 20 20 THR A 346 GLU A 366 1 21 SHEET 1 A 6 LYS A 12 GLY A 16 0 SHEET 2 A 6 LEU A 151 ASP A 155 1 O VAL A 152 N VAL A 14 SHEET 3 A 6 TYR A 112 PRO A 117 1 O ILE A 113 N LEU A 151 SHEET 4 A 6 ILE A 89 GLY A 94 1 N VAL A 90 O TYR A 112 SHEET 5 A 6 LYS A 33 ALA A 38 1 O LYS A 33 N ILE A 89 SHEET 6 A 6 ALA A 60 VAL A 65 1 O ALA A 60 N THR A 34 SHEET 1 B 2 LEU A 129 ILE A 132 0 SHEET 2 B 2 SER A 141 PHE A 144 -1 O SER A 141 N ILE A 132 LINK OD1 ASP A 173 ZN ZN A 371 1555 1555 2.05 LINK NE2 HIS A 256 ZN ZN A 371 1555 1555 2.05 LINK OE2 GLU A 268 ZN ZN A 372 1555 1555 2.10 LINK OE2 GLU A 268 ZN ZN A 372 16555 1555 2.09 LINK NE2 HIS A 271 ZN ZN A 372 1555 1555 2.03 LINK NE2 HIS A 271 ZN ZN A 372 16555 1555 2.02 LINK NE2 HIS A 274 ZN ZN A 371 1555 1555 2.04 LINK ZN ZN A 371 O1 AGOL A 401 1555 1555 2.04 LINK ZN ZN A 371 O3 BGOL A 401 1555 1555 1.97 LINK ZN ZN A 371 O2 AGOL A 401 1555 1555 2.41 SITE 1 AC1 4 ASP A 173 HIS A 256 HIS A 274 GOL A 401 SITE 1 AC2 2 GLU A 268 HIS A 271 SITE 1 AC3 7 ASP A 123 ALA A 124 ASP A 173 HIS A 256 SITE 2 AC3 7 HIS A 274 ZN A 371 HOH A 402 CRYST1 105.910 105.910 149.500 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009442 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006689 0.00000