PDB Short entry for 1JQP HEADER HYDROLASE 08-AUG-01 1JQP TITLE DIPEPTIDYL PEPTIDASE I (CATHEPSIN C), A TETRAMERIC CYSTEINE PROTEASE TITLE 2 OF THE PAPAIN FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDYL PEPTIDASE I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CATHEPSIN C; COMPND 5 EC: 3.4.14.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACCULO VIRUS KEYWDS CATHEPSIN C, DPP I, PAPAIN, TETRAMER, CHLORIDE, CYSTEINE PROTEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.OLSEN,A.KADZIOLA,C.LAURITZEN,J.PEDERSEN,S.LARSEN,S.W.DAHL REVDAT 5 29-JUL-20 1JQP 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 14-FEB-18 1JQP 1 REMARK REVDAT 3 13-JUL-11 1JQP 1 VERSN REVDAT 2 24-FEB-09 1JQP 1 VERSN REVDAT 1 18-OCT-02 1JQP 0 JRNL AUTH J.G.OLSEN,A.KADZIOLA,C.LAURITZEN,J.PEDERSEN,S.LARSEN, JRNL AUTH 2 S.W.DAHL JRNL TITL TETRAMERIC DIPEPTIDYL PEPTIDASE I DIRECTS SUBSTRATE JRNL TITL 2 SPECIFICITY BY USE OF THE RESIDUAL PRO-PART DOMAIN JRNL REF FEBS LETT. V. 506 201 2001 JRNL REFN ISSN 0014-5793 JRNL PMID 11602245 JRNL DOI 10.1016/S0014-5793(01)02911-8 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 26061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1303 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, NACL, DITHIOTHREITOL, EDTA, REMARK 280 BIS-TRIS PROPANE, AMMONIUM SULFATE, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.82667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.65333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.82667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.65333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.82667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.65333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.82667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.65333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.12000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 143.96806 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 107.30667 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 83.12000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 143.96806 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 107.30667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 107.30667 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.48000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 119 REMARK 465 ASN A 120 REMARK 465 HIS A 121 REMARK 465 SER A 122 REMARK 465 GLU A 123 REMARK 465 LYS A 124 REMARK 465 VAL A 125 REMARK 465 TYR A 126 REMARK 465 VAL A 127 REMARK 465 ASN A 128 REMARK 465 VAL A 129 REMARK 465 ALA A 130 REMARK 465 HIS A 131 REMARK 465 LEU A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 LEU A 135 REMARK 465 GLN A 136 REMARK 465 GLU A 137 REMARK 465 LYS A 138 REMARK 465 TYR A 139 REMARK 465 SER A 140 REMARK 465 GLU A 141 REMARK 465 ARG A 142 REMARK 465 LEU A 143 REMARK 465 TYR A 144 REMARK 465 SER A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 ASN A 149 REMARK 465 PHE A 150 REMARK 465 VAL A 151 REMARK 465 LYS A 152 REMARK 465 ALA A 153 REMARK 465 ILE A 154 REMARK 465 ASN A 155 REMARK 465 SER A 156 REMARK 465 VAL A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 159 REMARK 465 SER A 160 REMARK 465 TRP A 161 REMARK 465 THR A 162 REMARK 465 ALA A 163 REMARK 465 THR A 164 REMARK 465 THR A 165 REMARK 465 TYR A 166 REMARK 465 ARG A 167 REMARK 465 ARG A 168 REMARK 465 TYR A 169 REMARK 465 GLU A 170 REMARK 465 LYS A 171 REMARK 465 LEU A 172 REMARK 465 SER A 173 REMARK 465 ILE A 174 REMARK 465 ARG A 175 REMARK 465 ASP A 176 REMARK 465 LEU A 177 REMARK 465 ILE A 178 REMARK 465 ARG A 179 REMARK 465 ARG A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 HIS A 183 REMARK 465 SER A 184 REMARK 465 GLY A 185 REMARK 465 ARG A 186 REMARK 465 ILE A 187 REMARK 465 LEU A 188 REMARK 465 ARG A 189 REMARK 465 PRO A 190 REMARK 465 LYS A 191 REMARK 465 PRO A 192 REMARK 465 ALA A 193 REMARK 465 PRO A 194 REMARK 465 ILE A 195 REMARK 465 THR A 196 REMARK 465 ASP A 197 REMARK 465 GLU A 198 REMARK 465 ILE A 199 REMARK 465 GLN A 200 REMARK 465 GLN A 201 REMARK 465 GLN A 202 REMARK 465 ILE A 203 REMARK 465 THR A 366 REMARK 465 GLY A 367 REMARK 465 LEU A 368 REMARK 465 SER A 369 REMARK 465 ASP A 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 29.76 -159.55 REMARK 500 VAL A 54 41.04 -105.49 REMARK 500 TYR A 64 -107.20 53.54 REMARK 500 ARG A 89 -169.40 -117.95 REMARK 500 ASP A 211 107.89 -160.85 REMARK 500 ASN A 214 82.20 -155.87 REMARK 500 GLU A 228 -130.60 53.88 REMARK 500 SER A 229 58.19 -96.83 REMARK 500 ASN A 251 29.82 49.17 REMARK 500 ILE A 281 -65.26 -105.92 REMARK 500 PHE A 297 81.41 -159.78 REMARK 500 ASN A 379 13.48 -147.57 REMARK 500 VAL A 392 -67.87 -99.28 REMARK 500 ILE A 428 44.19 -144.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 1JQP A 1 438 UNP P80067 CATC_RAT 25 462 SEQADV 1JQP VAL A 105 UNP P80067 TYR 129 CONFLICT SEQADV 1JQP LEU A 239 UNP P80067 ILE 263 CONFLICT SEQRES 1 A 438 ASP THR PRO ALA ASN CYS THR TYR PRO ASP LEU LEU GLY SEQRES 2 A 438 THR TRP VAL PHE GLN VAL GLY PRO ARG HIS PRO ARG SER SEQRES 3 A 438 HIS ILE ASN CYS SER VAL MET GLU PRO THR GLU GLU LYS SEQRES 4 A 438 VAL VAL ILE HIS LEU LYS LYS LEU ASP THR ALA TYR ASP SEQRES 5 A 438 GLU VAL GLY ASN SER GLY TYR PHE THR LEU ILE TYR ASN SEQRES 6 A 438 GLN GLY PHE GLU ILE VAL LEU ASN ASP TYR LYS TRP PHE SEQRES 7 A 438 ALA PHE PHE LYS TYR GLU VAL LYS GLY SER ARG ALA ILE SEQRES 8 A 438 SER TYR CYS HIS GLU THR MET THR GLY TRP VAL HIS ASP SEQRES 9 A 438 VAL LEU GLY ARG ASN TRP ALA CYS PHE VAL GLY LYS LYS SEQRES 10 A 438 MET ALA ASN HIS SER GLU LYS VAL TYR VAL ASN VAL ALA SEQRES 11 A 438 HIS LEU GLY GLY LEU GLN GLU LYS TYR SER GLU ARG LEU SEQRES 12 A 438 TYR SER HIS HIS HIS ASN PHE VAL LYS ALA ILE ASN SER SEQRES 13 A 438 VAL GLN LYS SER TRP THR ALA THR THR TYR ARG ARG TYR SEQRES 14 A 438 GLU LYS LEU SER ILE ARG ASP LEU ILE ARG ARG SER GLY SEQRES 15 A 438 HIS SER GLY ARG ILE LEU ARG PRO LYS PRO ALA PRO ILE SEQRES 16 A 438 THR ASP GLU ILE GLN GLN GLN ILE LEU SER LEU PRO GLU SEQRES 17 A 438 SER TRP ASP TRP ARG ASN VAL ARG GLY ILE ASN PHE VAL SEQRES 18 A 438 SER PRO VAL ARG ASN GLN GLU SER CYS GLY SER CYS TYR SEQRES 19 A 438 SER PHE ALA SER LEU GLY MET LEU GLU ALA ARG ILE ARG SEQRES 20 A 438 ILE LEU THR ASN ASN SER GLN THR PRO ILE LEU SER PRO SEQRES 21 A 438 GLN GLU VAL VAL SER CYS SER PRO TYR ALA GLN GLY CYS SEQRES 22 A 438 ASP GLY GLY PHE PRO TYR LEU ILE ALA GLY LYS TYR ALA SEQRES 23 A 438 GLN ASP PHE GLY VAL VAL GLU GLU ASN CYS PHE PRO TYR SEQRES 24 A 438 THR ALA THR ASP ALA PRO CYS LYS PRO LYS GLU ASN CYS SEQRES 25 A 438 LEU ARG TYR TYR SER SER GLU TYR TYR TYR VAL GLY GLY SEQRES 26 A 438 PHE TYR GLY GLY CYS ASN GLU ALA LEU MET LYS LEU GLU SEQRES 27 A 438 LEU VAL LYS HIS GLY PRO MET ALA VAL ALA PHE GLU VAL SEQRES 28 A 438 HIS ASP ASP PHE LEU HIS TYR HIS SER GLY ILE TYR HIS SEQRES 29 A 438 HIS THR GLY LEU SER ASP PRO PHE ASN PRO PHE GLU LEU SEQRES 30 A 438 THR ASN HIS ALA VAL LEU LEU VAL GLY TYR GLY LYS ASP SEQRES 31 A 438 PRO VAL THR GLY LEU ASP TYR TRP ILE VAL LYS ASN SER SEQRES 32 A 438 TRP GLY SER GLN TRP GLY GLU SER GLY TYR PHE ARG ILE SEQRES 33 A 438 ARG ARG GLY THR ASP GLU CYS ALA ILE GLU SER ILE ALA SEQRES 34 A 438 MET ALA ALA ILE PRO ILE PRO LYS LEU MODRES 1JQP ASN A 5 ASN GLYCOSYLATION SITE MODRES 1JQP ASN A 251 ASN GLYCOSYLATION SITE HET NAG A 501 14 HET NAG A 502 14 HET CL A 503 1 HET SO4 A 504 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 CL CL 1- FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *83(H2 O) HELIX 1 1 THR A 7 LEU A 12 1 6 HELIX 2 2 SER A 232 THR A 250 1 19 HELIX 3 3 SER A 259 SER A 267 1 9 HELIX 4 4 GLN A 271 CYS A 273 5 3 HELIX 5 5 PHE A 277 ALA A 282 1 6 HELIX 6 6 GLY A 283 PHE A 289 1 7 HELIX 7 7 GLU A 294 PHE A 297 5 4 HELIX 8 8 ASN A 331 GLY A 343 1 13 HELIX 9 9 HIS A 352 HIS A 357 1 6 HELIX 10 10 ASP A 421 ILE A 425 5 5 SHEET 1 A12 GLY A 13 VAL A 19 0 SHEET 2 A12 GLU A 38 LYS A 45 -1 O GLU A 38 N VAL A 19 SHEET 3 A12 THR A 49 TYR A 51 -1 O THR A 49 N LYS A 45 SHEET 4 A12 SER A 57 ILE A 63 -1 N GLY A 58 O ALA A 50 SHEET 5 A12 GLY A 67 LEU A 72 -1 O GLY A 67 N ILE A 63 SHEET 6 A12 TYR A 75 LYS A 86 -1 O TYR A 75 N LEU A 72 SHEET 7 A12 ARG A 89 THR A 97 -1 O ARG A 89 N LYS A 86 SHEET 8 A12 TRP A 110 LYS A 117 -1 O GLY A 115 N THR A 97 SHEET 9 A12 GLY A 13 VAL A 19 -1 N VAL A 16 O LYS A 116 SHEET 10 A12 TRP A 110 LYS A 117 -1 O VAL A 114 N GLN A 18 SHEET 11 A12 GLY A 100 ASP A 104 -1 N GLY A 100 O PHE A 113 SHEET 12 A12 TYR A 75 LYS A 86 -1 N LYS A 76 O HIS A 103 SHEET 1 B 7 TRP A 210 ASP A 211 0 SHEET 2 B 7 HIS A 380 LYS A 389 -1 N TYR A 387 O TRP A 210 SHEET 3 B 7 MET A 345 PHE A 349 -1 O MET A 345 N LEU A 384 SHEET 4 B 7 HIS A 380 LYS A 389 -1 O HIS A 380 N PHE A 349 SHEET 5 B 7 ASP A 396 LYS A 401 -1 N TYR A 397 O GLY A 388 SHEET 6 B 7 TYR A 413 ARG A 417 -1 O PHE A 414 N VAL A 400 SHEET 7 B 7 ILE A 362 TYR A 363 1 N TYR A 363 O ARG A 415 SHEET 1 C 3 VAL A 291 VAL A 292 0 SHEET 2 C 3 ARG A 314 TYR A 322 -1 N TYR A 315 O VAL A 291 SHEET 3 C 3 MET A 430 ILE A 435 -1 N ALA A 431 O TYR A 321 SSBOND 1 CYS A 6 CYS A 94 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 112 1555 1555 2.04 SSBOND 3 CYS A 230 CYS A 273 1555 1555 2.03 SSBOND 4 CYS A 266 CYS A 306 1555 1555 2.04 SSBOND 5 CYS A 296 CYS A 312 1555 1555 2.03 LINK ND2 ASN A 5 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 251 C1 NAG A 502 1555 1555 1.46 CISPEP 1 LYS A 46 LEU A 47 0 -0.27 CRYST1 166.240 166.240 80.480 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006015 0.003473 0.000000 0.00000 SCALE2 0.000000 0.006946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012425 0.00000