PDB Short entry for 1JV1 HEADER TRANSFERASE 28-AUG-01 1JV1 TITLE CRYSTAL STRUCTURE OF HUMAN AGX1 COMPLEXED WITH UDPGLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLCNAC1P URIDYLTRANSFERASE ISOFORM 1: AGX1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1BLUE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRU277 KEYWDS NUCLEOTIDYLTRANSFERASE, ALTERNATIVE SPLICING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PENEFF,Y.BOURNE REVDAT 4 13-MAR-24 1JV1 1 REMARK REVDAT 3 04-OCT-17 1JV1 1 REMARK REVDAT 2 24-FEB-09 1JV1 1 VERSN REVDAT 1 28-AUG-02 1JV1 0 JRNL AUTH C.PENEFF,P.FERRARI,V.CHARRIER,Y.TABURET,C.MONNIER,V.ZAMBONI, JRNL AUTH 2 J.WINTER,M.HARNOIS,F.FASSY,Y.BOURNE JRNL TITL CRYSTAL STRUCTURES OF TWO HUMAN PYROPHOSPHORYLASE ISOFORMS JRNL TITL 2 IN COMPLEXES WITH UDPGLC(GAL)NAC: ROLE OF THE ALTERNATIVELY JRNL TITL 3 SPLICED INSERT IN THE ENZYME OLIGOMERIC ASSEMBLY AND ACTIVE JRNL TITL 4 SITE ARCHITECTURE. JRNL REF EMBO J. V. 20 6191 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11707391 JRNL DOI 10.1093/EMBOJ/20.22.6191 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1907292.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 90377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2706 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 14424 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 422 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 842 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.87000 REMARK 3 B22 (A**2) : -2.04000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.440 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.190 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.470 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 47.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : UD1.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : UD1.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90423 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 39.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG600, IMIDAZOLE/MALATE, PH 5.7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.45200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 57 REMARK 465 GLN A 58 REMARK 465 SER A 59 REMARK 465 SER A 60 REMARK 465 HIS A 61 REMARK 465 GLN A 62 REMARK 465 LYS A 63 REMARK 465 ASN A 64 REMARK 465 VAL A 65 REMARK 465 ASP A 66 REMARK 465 ALA A 67 REMARK 465 LYS A 502 REMARK 465 ASN A 503 REMARK 465 GLY A 504 REMARK 465 ILE A 505 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 ALA B 28 REMARK 465 GLN B 29 REMARK 465 ASN B 57 REMARK 465 GLN B 58 REMARK 465 SER B 59 REMARK 465 SER B 60 REMARK 465 HIS B 61 REMARK 465 GLN B 62 REMARK 465 LYS B 63 REMARK 465 ASN B 64 REMARK 465 VAL B 501 REMARK 465 LYS B 502 REMARK 465 ASN B 503 REMARK 465 GLY B 504 REMARK 465 ILE B 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 998 O HOH B 1009 2.07 REMARK 500 O HOH B 1038 O HOH B 1199 2.08 REMARK 500 O HOH A 1245 O HOH A 1293 2.10 REMARK 500 O HOH A 1257 O HOH B 1212 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 315 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 170 -17.72 -145.94 REMARK 500 CYS A 293 -167.71 -165.03 REMARK 500 VAL A 344 -59.69 -132.15 REMARK 500 GLN A 412 -120.46 -101.04 REMARK 500 ALA A 473 33.41 -145.61 REMARK 500 ASN B 4 36.25 -91.44 REMARK 500 ASN B 23 21.63 -76.87 REMARK 500 GLU B 54 133.35 -37.83 REMARK 500 THR B 170 -25.37 -141.54 REMARK 500 ASP B 221 31.00 -82.76 REMARK 500 VAL B 344 -56.11 -129.12 REMARK 500 GLN B 364 32.71 72.04 REMARK 500 GLN B 412 -126.37 -95.50 REMARK 500 ALA B 473 31.46 -144.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JV3 RELATED DB: PDB REMARK 900 STRUCTURE OF AGX1 COMPLEXED WITH UDPGALNAC REMARK 900 RELATED ID: 1JVD RELATED DB: PDB REMARK 900 STRUCTURE OF AGX2 COMPLEXED WITH UDPGLCNAC REMARK 900 RELATED ID: 1JVG RELATED DB: PDB REMARK 900 STRUCTURE OF AGX2 COMPLEXED WITH UDPGALNAC DBREF 1JV1 A 1 505 UNP Q16222 UAP1_HUMAN 1 505 DBREF 1JV1 B 1 505 UNP Q16222 UAP1_HUMAN 1 505 SEQADV 1JV1 GLY A 445 UNP Q16222 SER 445 SEE REMARK 999 SEQADV 1JV1 GLY B 445 UNP Q16222 SER 445 SEE REMARK 999 SEQRES 1 A 505 MET ASN ILE ASN ASP LEU LYS LEU THR LEU SER LYS ALA SEQRES 2 A 505 GLY GLN GLU HIS LEU LEU ARG PHE TRP ASN GLU LEU GLU SEQRES 3 A 505 GLU ALA GLN GLN VAL GLU LEU TYR ALA GLU LEU GLN ALA SEQRES 4 A 505 MET ASN PHE GLU GLU LEU ASN PHE PHE PHE GLN LYS ALA SEQRES 5 A 505 ILE GLU GLY PHE ASN GLN SER SER HIS GLN LYS ASN VAL SEQRES 6 A 505 ASP ALA ARG MET GLU PRO VAL PRO ARG GLU VAL LEU GLY SEQRES 7 A 505 SER ALA THR ARG ASP GLN ASP GLN LEU GLN ALA TRP GLU SEQRES 8 A 505 SER GLU GLY LEU PHE GLN ILE SER GLN ASN LYS VAL ALA SEQRES 9 A 505 VAL LEU LEU LEU ALA GLY GLY GLN GLY THR ARG LEU GLY SEQRES 10 A 505 VAL ALA TYR PRO LYS GLY MET TYR ASP VAL GLY LEU PRO SEQRES 11 A 505 SER ARG LYS THR LEU PHE GLN ILE GLN ALA GLU ARG ILE SEQRES 12 A 505 LEU LYS LEU GLN GLN VAL ALA GLU LYS TYR TYR GLY ASN SEQRES 13 A 505 LYS CYS ILE ILE PRO TRP TYR ILE MET THR SER GLY ARG SEQRES 14 A 505 THR MET GLU SER THR LYS GLU PHE PHE THR LYS HIS LYS SEQRES 15 A 505 TYR PHE GLY LEU LYS LYS GLU ASN VAL ILE PHE PHE GLN SEQRES 16 A 505 GLN GLY MET LEU PRO ALA MET SER PHE ASP GLY LYS ILE SEQRES 17 A 505 ILE LEU GLU GLU LYS ASN LYS VAL SER MET ALA PRO ASP SEQRES 18 A 505 GLY ASN GLY GLY LEU TYR ARG ALA LEU ALA ALA GLN ASN SEQRES 19 A 505 ILE VAL GLU ASP MET GLU GLN ARG GLY ILE TRP SER ILE SEQRES 20 A 505 HIS VAL TYR CYS VAL ASP ASN ILE LEU VAL LYS VAL ALA SEQRES 21 A 505 ASP PRO ARG PHE ILE GLY PHE CYS ILE GLN LYS GLY ALA SEQRES 22 A 505 ASP CYS GLY ALA LYS VAL VAL GLU LYS THR ASN PRO THR SEQRES 23 A 505 GLU PRO VAL GLY VAL VAL CYS ARG VAL ASP GLY VAL TYR SEQRES 24 A 505 GLN VAL VAL GLU TYR SER GLU ILE SER LEU ALA THR ALA SEQRES 25 A 505 GLN LYS ARG SER SER ASP GLY ARG LEU LEU PHE ASN ALA SEQRES 26 A 505 GLY ASN ILE ALA ASN HIS PHE PHE THR VAL PRO PHE LEU SEQRES 27 A 505 ARG ASP VAL VAL ASN VAL TYR GLU PRO GLN LEU GLN HIS SEQRES 28 A 505 HIS VAL ALA GLN LYS LYS ILE PRO TYR VAL ASP THR GLN SEQRES 29 A 505 GLY GLN LEU ILE LYS PRO ASP LYS PRO ASN GLY ILE LYS SEQRES 30 A 505 MET GLU LYS PHE VAL PHE ASP ILE PHE GLN PHE ALA LYS SEQRES 31 A 505 LYS PHE VAL VAL TYR GLU VAL LEU ARG GLU ASP GLU PHE SEQRES 32 A 505 SER PRO LEU LYS ASN ALA ASP SER GLN ASN GLY LYS ASP SEQRES 33 A 505 ASN PRO THR THR ALA ARG HIS ALA LEU MET SER LEU HIS SEQRES 34 A 505 HIS CYS TRP VAL LEU ASN ALA GLY GLY HIS PHE ILE ASP SEQRES 35 A 505 GLU ASN GLY SER ARG LEU PRO ALA ILE PRO ARG LEU LYS SEQRES 36 A 505 ASP ALA ASN ASP VAL PRO ILE GLN CYS GLU ILE SER PRO SEQRES 37 A 505 LEU ILE SER TYR ALA GLY GLU GLY LEU GLU SER TYR VAL SEQRES 38 A 505 ALA ASP LYS GLU PHE HIS ALA PRO LEU ILE ILE ASP GLU SEQRES 39 A 505 ASN GLY VAL HIS GLU LEU VAL LYS ASN GLY ILE SEQRES 1 B 505 MET ASN ILE ASN ASP LEU LYS LEU THR LEU SER LYS ALA SEQRES 2 B 505 GLY GLN GLU HIS LEU LEU ARG PHE TRP ASN GLU LEU GLU SEQRES 3 B 505 GLU ALA GLN GLN VAL GLU LEU TYR ALA GLU LEU GLN ALA SEQRES 4 B 505 MET ASN PHE GLU GLU LEU ASN PHE PHE PHE GLN LYS ALA SEQRES 5 B 505 ILE GLU GLY PHE ASN GLN SER SER HIS GLN LYS ASN VAL SEQRES 6 B 505 ASP ALA ARG MET GLU PRO VAL PRO ARG GLU VAL LEU GLY SEQRES 7 B 505 SER ALA THR ARG ASP GLN ASP GLN LEU GLN ALA TRP GLU SEQRES 8 B 505 SER GLU GLY LEU PHE GLN ILE SER GLN ASN LYS VAL ALA SEQRES 9 B 505 VAL LEU LEU LEU ALA GLY GLY GLN GLY THR ARG LEU GLY SEQRES 10 B 505 VAL ALA TYR PRO LYS GLY MET TYR ASP VAL GLY LEU PRO SEQRES 11 B 505 SER ARG LYS THR LEU PHE GLN ILE GLN ALA GLU ARG ILE SEQRES 12 B 505 LEU LYS LEU GLN GLN VAL ALA GLU LYS TYR TYR GLY ASN SEQRES 13 B 505 LYS CYS ILE ILE PRO TRP TYR ILE MET THR SER GLY ARG SEQRES 14 B 505 THR MET GLU SER THR LYS GLU PHE PHE THR LYS HIS LYS SEQRES 15 B 505 TYR PHE GLY LEU LYS LYS GLU ASN VAL ILE PHE PHE GLN SEQRES 16 B 505 GLN GLY MET LEU PRO ALA MET SER PHE ASP GLY LYS ILE SEQRES 17 B 505 ILE LEU GLU GLU LYS ASN LYS VAL SER MET ALA PRO ASP SEQRES 18 B 505 GLY ASN GLY GLY LEU TYR ARG ALA LEU ALA ALA GLN ASN SEQRES 19 B 505 ILE VAL GLU ASP MET GLU GLN ARG GLY ILE TRP SER ILE SEQRES 20 B 505 HIS VAL TYR CYS VAL ASP ASN ILE LEU VAL LYS VAL ALA SEQRES 21 B 505 ASP PRO ARG PHE ILE GLY PHE CYS ILE GLN LYS GLY ALA SEQRES 22 B 505 ASP CYS GLY ALA LYS VAL VAL GLU LYS THR ASN PRO THR SEQRES 23 B 505 GLU PRO VAL GLY VAL VAL CYS ARG VAL ASP GLY VAL TYR SEQRES 24 B 505 GLN VAL VAL GLU TYR SER GLU ILE SER LEU ALA THR ALA SEQRES 25 B 505 GLN LYS ARG SER SER ASP GLY ARG LEU LEU PHE ASN ALA SEQRES 26 B 505 GLY ASN ILE ALA ASN HIS PHE PHE THR VAL PRO PHE LEU SEQRES 27 B 505 ARG ASP VAL VAL ASN VAL TYR GLU PRO GLN LEU GLN HIS SEQRES 28 B 505 HIS VAL ALA GLN LYS LYS ILE PRO TYR VAL ASP THR GLN SEQRES 29 B 505 GLY GLN LEU ILE LYS PRO ASP LYS PRO ASN GLY ILE LYS SEQRES 30 B 505 MET GLU LYS PHE VAL PHE ASP ILE PHE GLN PHE ALA LYS SEQRES 31 B 505 LYS PHE VAL VAL TYR GLU VAL LEU ARG GLU ASP GLU PHE SEQRES 32 B 505 SER PRO LEU LYS ASN ALA ASP SER GLN ASN GLY LYS ASP SEQRES 33 B 505 ASN PRO THR THR ALA ARG HIS ALA LEU MET SER LEU HIS SEQRES 34 B 505 HIS CYS TRP VAL LEU ASN ALA GLY GLY HIS PHE ILE ASP SEQRES 35 B 505 GLU ASN GLY SER ARG LEU PRO ALA ILE PRO ARG LEU LYS SEQRES 36 B 505 ASP ALA ASN ASP VAL PRO ILE GLN CYS GLU ILE SER PRO SEQRES 37 B 505 LEU ILE SER TYR ALA GLY GLU GLY LEU GLU SER TYR VAL SEQRES 38 B 505 ALA ASP LYS GLU PHE HIS ALA PRO LEU ILE ILE ASP GLU SEQRES 39 B 505 ASN GLY VAL HIS GLU LEU VAL LYS ASN GLY ILE HET UD1 A 901 39 HET UD1 B 902 39 HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 3 UD1 2(C17 H27 N3 O17 P2) FORMUL 5 HOH *842(H2 O) HELIX 1 1 ASN A 2 ALA A 13 1 12 HELIX 2 2 GLN A 15 ARG A 20 5 6 HELIX 3 3 PHE A 21 LEU A 25 5 5 HELIX 4 4 GLU A 26 ALA A 39 1 14 HELIX 5 5 ASN A 41 GLY A 55 1 15 HELIX 6 6 PRO A 73 GLU A 75 5 3 HELIX 7 7 ASP A 83 ASP A 85 5 3 HELIX 8 8 GLN A 86 GLN A 100 1 15 HELIX 9 9 PRO A 121 TYR A 125 5 5 HELIX 10 10 THR A 134 GLY A 155 1 22 HELIX 11 11 THR A 170 HIS A 181 1 12 HELIX 12 12 LYS A 182 LEU A 186 5 5 HELIX 13 13 LYS A 187 GLU A 189 5 3 HELIX 14 14 GLY A 222 GLY A 224 5 3 HELIX 15 15 GLY A 225 GLN A 233 1 9 HELIX 16 16 ASN A 234 ARG A 242 1 9 HELIX 17 17 ASP A 261 LYS A 271 1 11 HELIX 18 18 GLU A 303 ILE A 307 5 5 HELIX 19 19 SER A 308 LYS A 314 1 7 HELIX 20 20 VAL A 335 VAL A 344 1 10 HELIX 21 21 TYR A 345 LEU A 349 5 5 HELIX 22 22 PHE A 381 ALA A 389 5 9 HELIX 23 23 LEU A 398 PHE A 403 1 6 HELIX 24 24 ASN A 417 ALA A 436 1 20 HELIX 25 25 LEU A 477 ALA A 482 1 6 HELIX 26 26 ASN B 4 ALA B 13 1 10 HELIX 27 27 GLN B 15 ARG B 20 5 6 HELIX 28 28 VAL B 31 GLN B 38 1 8 HELIX 29 29 ASN B 41 GLU B 54 1 14 HELIX 30 30 PRO B 73 GLU B 75 5 3 HELIX 31 31 ASP B 83 ASP B 85 5 3 HELIX 32 32 GLN B 86 GLN B 100 1 15 HELIX 33 33 PRO B 121 TYR B 125 5 5 HELIX 34 34 THR B 134 GLY B 155 1 22 HELIX 35 35 THR B 170 HIS B 181 1 12 HELIX 36 36 LYS B 182 LEU B 186 5 5 HELIX 37 37 LYS B 187 GLU B 189 5 3 HELIX 38 38 GLY B 222 GLY B 224 5 3 HELIX 39 39 GLY B 225 GLN B 233 1 9 HELIX 40 40 ASN B 234 GLY B 243 1 10 HELIX 41 41 ASP B 261 GLY B 272 1 12 HELIX 42 42 GLU B 303 ILE B 307 5 5 HELIX 43 43 SER B 308 LYS B 314 1 7 HELIX 44 44 VAL B 335 VAL B 344 1 10 HELIX 45 45 TYR B 345 LEU B 349 5 5 HELIX 46 46 PHE B 381 ALA B 389 5 9 HELIX 47 47 LEU B 398 PHE B 403 1 6 HELIX 48 48 ASN B 417 ALA B 436 1 20 HELIX 49 49 LEU B 477 ALA B 482 1 6 SHEET 1 A 8 LEU A 77 SER A 79 0 SHEET 2 A 8 PHE A 392 VAL A 397 1 O GLU A 396 N GLY A 78 SHEET 3 A 8 CYS A 275 GLU A 281 1 N VAL A 279 O VAL A 397 SHEET 4 A 8 ALA A 325 THR A 334 -1 O GLY A 326 N VAL A 280 SHEET 5 A 8 SER A 246 CYS A 251 -1 N ILE A 247 O PHE A 333 SHEET 6 A 8 VAL A 103 LEU A 108 1 N LEU A 106 O HIS A 248 SHEET 7 A 8 TRP A 162 THR A 166 1 O TYR A 163 N LEU A 107 SHEET 8 A 8 VAL A 191 GLN A 195 1 O ILE A 192 N ILE A 164 SHEET 1 B 2 MET A 198 PRO A 200 0 SHEET 2 B 2 MET A 218 PRO A 220 -1 O ALA A 219 N LEU A 199 SHEET 1 C 3 MET A 202 SER A 203 0 SHEET 2 C 3 GLY A 375 GLU A 379 -1 O ILE A 376 N MET A 202 SHEET 3 C 3 HIS A 352 LYS A 356 -1 N HIS A 352 O GLU A 379 SHEET 1 D 2 LEU A 210 GLU A 212 0 SHEET 2 D 2 LYS A 215 VAL A 216 -1 O LYS A 215 N GLU A 212 SHEET 1 E 2 VAL A 291 VAL A 295 0 SHEET 2 E 2 VAL A 298 VAL A 302 -1 O GLN A 300 N CYS A 293 SHEET 1 F 2 TYR A 360 VAL A 361 0 SHEET 2 F 2 LEU A 367 ILE A 368 -1 O ILE A 368 N TYR A 360 SHEET 1 G 2 HIS A 439 PHE A 440 0 SHEET 2 G 2 GLU A 485 PHE A 486 1 O PHE A 486 N HIS A 439 SHEET 1 H 3 CYS A 464 ILE A 466 0 SHEET 2 H 3 LEU A 490 ASP A 493 1 O LEU A 490 N GLU A 465 SHEET 3 H 3 GLY A 496 GLU A 499 -1 O HIS A 498 N ILE A 491 SHEET 1 I 3 MET B 69 GLU B 70 0 SHEET 2 I 3 VAL B 291 VAL B 295 -1 O ARG B 294 N GLU B 70 SHEET 3 I 3 VAL B 298 VAL B 302 -1 O VAL B 298 N VAL B 295 SHEET 1 J 8 LEU B 77 SER B 79 0 SHEET 2 J 8 PHE B 392 GLU B 396 1 O VAL B 394 N GLY B 78 SHEET 3 J 8 CYS B 275 GLU B 281 1 N VAL B 279 O TYR B 395 SHEET 4 J 8 ALA B 325 THR B 334 -1 O PHE B 332 N GLY B 276 SHEET 5 J 8 SER B 246 CYS B 251 -1 N VAL B 249 O HIS B 331 SHEET 6 J 8 VAL B 103 LEU B 108 1 N LEU B 106 O HIS B 248 SHEET 7 J 8 TRP B 162 THR B 166 1 O TYR B 163 N LEU B 107 SHEET 8 J 8 VAL B 191 GLN B 195 1 O PHE B 194 N THR B 166 SHEET 1 K 2 MET B 198 PRO B 200 0 SHEET 2 K 2 MET B 218 PRO B 220 -1 O ALA B 219 N LEU B 199 SHEET 1 L 2 LEU B 210 GLU B 212 0 SHEET 2 L 2 LYS B 215 VAL B 216 -1 O LYS B 215 N GLU B 212 SHEET 1 M 2 HIS B 352 LYS B 356 0 SHEET 2 M 2 GLY B 375 GLU B 379 -1 O GLU B 379 N HIS B 352 SHEET 1 N 2 TYR B 360 ASP B 362 0 SHEET 2 N 2 GLN B 366 ILE B 368 -1 O ILE B 368 N TYR B 360 SHEET 1 O 2 HIS B 439 PHE B 440 0 SHEET 2 O 2 GLU B 485 PHE B 486 1 O PHE B 486 N HIS B 439 SHEET 1 P 3 CYS B 464 ILE B 466 0 SHEET 2 P 3 LEU B 490 ASP B 493 1 O LEU B 490 N GLU B 465 SHEET 3 P 3 GLY B 496 GLU B 499 -1 O HIS B 498 N ILE B 491 CISPEP 1 ALA A 488 PRO A 489 0 1.40 CISPEP 2 ALA B 488 PRO B 489 0 0.04 SITE 1 AC1 28 LEU A 108 GLY A 110 GLY A 111 MET A 165 SITE 2 AC1 28 GLN A 196 PRO A 220 GLY A 222 ASN A 223 SITE 3 AC1 28 CYS A 251 VAL A 252 VAL A 289 GLY A 290 SITE 4 AC1 28 GLU A 303 TYR A 304 ASN A 327 PHE A 381 SITE 5 AC1 28 PHE A 383 PHE A 403 LYS A 407 HOH A 908 SITE 6 AC1 28 HOH A 929 HOH A 946 HOH A1023 HOH A1080 SITE 7 AC1 28 HOH A1358 ARG B 453 LYS B 455 HOH B1268 SITE 1 AC2 26 LYS A 455 LEU B 108 GLY B 110 GLY B 111 SITE 2 AC2 26 MET B 165 GLN B 196 PRO B 220 GLY B 222 SITE 3 AC2 26 ASN B 223 CYS B 251 VAL B 252 VAL B 289 SITE 4 AC2 26 GLY B 290 GLU B 303 TYR B 304 ASN B 327 SITE 5 AC2 26 PHE B 381 PHE B 383 PHE B 403 LYS B 407 SITE 6 AC2 26 HOH B 905 HOH B 918 HOH B1082 HOH B1086 SITE 7 AC2 26 HOH B1234 HOH B1269 CRYST1 85.829 70.904 96.180 90.00 95.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011651 0.000000 0.001071 0.00000 SCALE2 0.000000 0.014104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010441 0.00000