PDB Short entry for 1K76
HEADER    SIGNALING PROTEIN                       18-OCT-01   1K76              
TITLE     SOLUTION STRUCTURE OF THE C-TERMINAL SEM-5 SH3 DOMAIN (MINIMIZED      
TITLE    2 AVERAGE STRUCTURE)                                                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SEX MUSCLE ABNORMAL PROTEIN 5;                             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: SH3 DOMAIN (RESIDUES 155-214);                             
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS;                         
SOURCE   3 ORGANISM_TAXID: 6239;                                                
SOURCE   4 GENE: SEM-5;                                                         
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS;                                
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET19B                                    
KEYWDS    ALL BETA PROTEIN, SIGNALING PROTEIN                                   
EXPDTA    SOLUTION NMR                                                          
MDLTYP    MINIMIZED AVERAGE                                                     
AUTHOR    J.FERREON,D.VOLK,B.LUXON,D.GORENSTEIN,V.HILSER                        
REVDAT   3   27-OCT-21 1K76    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 1K76    1       VERSN                                    
REVDAT   1   20-MAY-03 1K76    0                                                
JRNL        AUTH   J.FERREON,D.VOLK,B.LUXON,D.GORENSTEIN,V.HILSER               
JRNL        TITL   SOLUTION STRUCTURE, DYNAMICS AND THERMODYNAMICS OF THE       
JRNL        TITL 2 NATIVE STATE ENSEMBLE OF SEM-5 C-TERMINAL SH3 DOMAIN         
JRNL        REF    BIOCHEMISTRY                  V.  42  5582 2003              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   12741814                                                     
JRNL        DOI    10.1021/BI030005J                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER (CNS), BRUNGER, ET AL. (CNS)                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1K76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-01.                  
REMARK 100 THE DEPOSITION ID IS D_1000014645.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 4.8                                
REMARK 210  IONIC STRENGTH                 : 100 MM NACL                        
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 13C,15N 1MM SEM-5 SH3 DOMAIN 50    
REMARK 210                                   MM SODIUM ACETATE BUFFER, 10 MM    
REMARK 210                                   CACL2, 100 MM NACL,PH 4.8, 90%     
REMARK 210                                   H20, 10%D20                        
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D 15N-NOESY-HSQC; 3D 13C-NOESY    
REMARK 210                                   -HSQC                              
REMARK 210  SPECTROMETER FIELD STRENGTH    : 400 MHZ                            
REMARK 210  SPECTROMETER MODEL             : UNITYPLUS                          
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : FELIX, VNMR                        
REMARK 210   METHOD USED                   : DISTANCE GEOMETRY SIMULATED        
REMARK 210                                   ANNEALING MOLECULAR DYNAMICS       
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 50                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS,STRUCTURES    
REMARK 210                                   WITH THE LOWEST ENERGY             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED                                 
REMARK 210  USING TRIPLE-RESONANCE NMR SPECTROSCOPY                             
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465     RES C SSSEQI                                                     
REMARK 465     HIS A     1                                                      
REMARK 465     MET A     2                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HE2  PHE A    51    HG13  VAL A    56              1.10            
REMARK 500   OD2  ASP A    27    HD12  LEU A    44              1.42            
REMARK 500   O    SER A    61     HA   ASN A    62              1.45            
REMARK 500   OD1  ASP A    27    HD23  LEU A    44              1.52            
REMARK 500   O    ASN A    60     N    ASN A    62              1.63            
REMARK 500   C    SER A    61     CA   ASN A    62              1.75            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    GLU A   3   N     GLU A   3   CA     -0.282                       
REMARK 500    GLU A   3   CA    GLU A   3   CB     -0.138                       
REMARK 500    GLU A   3   CA    GLU A   3   C      -0.273                       
REMARK 500    GLU A   3   C     THR A   4   N      -0.184                       
REMARK 500    THR A   4   N     THR A   4   CA     -0.218                       
REMARK 500    LYS A   5   CB    LYS A   5   CG     -0.192                       
REMARK 500    LYS A  24   CA    LYS A  24   CB     -0.141                       
REMARK 500    ARG A  25   CD    ARG A  25   NE     -0.136                       
REMARK 500    ARG A  25   NE    ARG A  25   CZ     -0.105                       
REMARK 500    ARG A  47   CZ    ARG A  47   NH1     0.115                       
REMARK 500    ARG A  48   CD    ARG A  48   NE     -0.115                       
REMARK 500    ASN A  60   CA    ASN A  60   C      -0.226                       
REMARK 500    ASN A  60   C     SER A  61   N      -0.166                       
REMARK 500    SER A  61   N     SER A  61   CA     -0.254                       
REMARK 500    SER A  61   CA    SER A  61   CB     -0.100                       
REMARK 500    SER A  61   C     ASN A  62   N      -0.186                       
REMARK 500    ASN A  62   N     ASN A  62   CA     -0.290                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    GLU A   3   CA  -  C   -  N   ANGL. DEV. = -13.6 DEGREES          
REMARK 500    LYS A   5   CG  -  CD  -  CE  ANGL. DEV. = -18.0 DEGREES          
REMARK 500    PHE A  11   CB  -  CG  -  CD2 ANGL. DEV. =  -4.4 DEGREES          
REMARK 500    LYS A  24   CB  -  CG  -  CD  ANGL. DEV. = -30.0 DEGREES          
REMARK 500    ARG A  25   NE  -  CZ  -  NH1 ANGL. DEV. =  -7.6 DEGREES          
REMARK 500    ARG A  25   NE  -  CZ  -  NH2 ANGL. DEV. =   3.3 DEGREES          
REMARK 500    ARG A  47   NE  -  CZ  -  NH2 ANGL. DEV. =  -4.9 DEGREES          
REMARK 500    ARG A  48   NE  -  CZ  -  NH1 ANGL. DEV. =  -7.1 DEGREES          
REMARK 500    ASN A  60   CB  -  CA  -  C   ANGL. DEV. = -12.6 DEGREES          
REMARK 500    ASN A  60   N   -  CA  -  CB  ANGL. DEV. =  15.6 DEGREES          
REMARK 500    ASN A  60   CA  -  C   -  N   ANGL. DEV. = -15.4 DEGREES          
REMARK 500    ASN A  62   C   -  N   -  CA  ANGL. DEV. = -23.5 DEGREES          
REMARK 500    ASN A  62   CA  -  CB  -  CG  ANGL. DEV. = -23.9 DEGREES          
REMARK 500    ASN A  62   N   -  CA  -  C   ANGL. DEV. = -22.9 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A  24     -166.19   -123.28                                   
REMARK 500    ASN A  45      -37.75     79.65                                   
REMARK 500    ASN A  46      -23.05   -171.78                                   
REMARK 500    ALA A  57      114.65   -161.34                                   
REMARK 500    ASN A  60       62.24     38.54                                   
REMARK 500    SER A  61       94.93    -25.22                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    ARG A  47         0.16    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1K76 A    3    62  UNP    P29355   SEM5_CAEEL     155    214             
SEQADV 1K76 ALA A   57  UNP  P29355    CYS   209 ENGINEERED MUTATION            
SEQRES   1 A   62  HIS MET GLU THR LYS PHE VAL GLN ALA LEU PHE ASP PHE          
SEQRES   2 A   62  ASN PRO GLN GLU SER GLY GLU LEU ALA PHE LYS ARG GLY          
SEQRES   3 A   62  ASP VAL ILE THR LEU ILE ASN LYS ASP ASP PRO ASN TRP          
SEQRES   4 A   62  TRP GLU GLY GLN LEU ASN ASN ARG ARG GLY ILE PHE PRO          
SEQRES   5 A   62  SER ASN TYR VAL ALA PRO TYR ASN SER ASN                      
SHEET    1   A 5 ARG A  47  PRO A  52  0                                        
SHEET    2   A 5 TRP A  39  LEU A  44 -1  N  GLY A  42   O  GLY A  49           
SHEET    3   A 5 VAL A  28  ASN A  33 -1  N  THR A  30   O  GLN A  43           
SHEET    4   A 5 PHE A   6  ALA A   9 -1  N  VAL A   7   O  ILE A  29           
SHEET    5   A 5 VAL A  56  PRO A  58 -1  O  ALA A  57   N  GLN A   8           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000