PDB Short entry for 1K78 HEADER TRANSCRIPTION/DNA 18-OCT-01 1K78 TITLE PAX5(1-149)+ETS-1(331-440)+DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER; COMPND 3 CHAIN: C, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER; COMPND 7 CHAIN: D, H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PAIRED BOX PROTEIN PAX5; COMPND 11 CHAIN: A, E, I; COMPND 12 FRAGMENT: PAIRED DOMAIN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: C-ETS-1 PROTEIN; COMPND 16 CHAIN: B, F; COMPND 17 FRAGMENT: ETS DOMAIN; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: PAX5; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 GENE: ETS-1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PAIRED DOMAIN, ETS DOMAIN, TRANSCRIPTION FACTOR, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.W.GARVIE,J.HAGMAN,C.WOLBERGER REVDAT 3 07-FEB-24 1K78 1 REMARK REVDAT 2 24-FEB-09 1K78 1 VERSN REVDAT 1 04-JAN-02 1K78 0 JRNL AUTH C.W.GARVIE,J.HAGMAN,C.WOLBERGER JRNL TITL STRUCTURAL STUDIES OF ETS-1/PAX5 COMPLEX FORMATION ON DNA. JRNL REF MOL.CELL V. 8 1267 2001 JRNL REFN ISSN 1097-2765 JRNL PMID 11779502 JRNL DOI 10.1016/S1097-2765(01)00410-5 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3301348.530 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 56830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2877 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8945 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 487 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4122 REMARK 3 NUCLEIC ACID ATOMS : 2202 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.39000 REMARK 3 B22 (A**2) : 6.39000 REMARK 3 B33 (A**2) : -4.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.090 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.740 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 60.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-00; 28-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 14-BM-D; X4A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788, 0.9790, 0.9537; 0.9117 REMARK 200 MONOCHROMATOR : CARS-DESIGN SI(111) DOUBLE REMARK 200 -BOUNCE; DOUBLE SI(111) CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 45.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MAGNESIUM ACETATE, 200MM AMMONIUM REMARK 280 SULPHATE, 20% PEG4000, 100MM ACETATE BUFFER, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.92000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.92000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1,2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 9 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 AN EXTRA MOLECULE (CHAIN I) WAS FOUND BOUND TO THE DNA. REMARK 300 THIS IS BELIEVED TO BE A CRYSTALLOGRAPHIC ARTIFACT DUE REMARK 300 TO A PSEUDO-CONSENSUS SEQUENCE. IT WAS NOT OBSERVED IN REMARK 300 THE SECOND BIOMOLECULE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 TYR A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 HIS A 17 REMARK 465 GLY A 18 REMARK 465 VAL A 143 REMARK 465 GLN A 144 REMARK 465 GLN A 145 REMARK 465 PRO A 146 REMARK 465 PRO A 147 REMARK 465 ASN A 148 REMARK 465 GLN A 149 REMARK 465 GLY B 331 REMARK 465 SER B 332 REMARK 465 GLY B 333 REMARK 465 PRO B 334 REMARK 465 PRO B 437 REMARK 465 ASP B 438 REMARK 465 ALA B 439 REMARK 465 ASP B 440 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 LEU E 3 REMARK 465 GLU E 4 REMARK 465 LYS E 5 REMARK 465 ASN E 6 REMARK 465 TYR E 7 REMARK 465 PRO E 8 REMARK 465 THR E 9 REMARK 465 PRO E 10 REMARK 465 ARG E 11 REMARK 465 THR E 12 REMARK 465 SER E 13 REMARK 465 ARG E 14 REMARK 465 THR E 15 REMARK 465 GLY E 16 REMARK 465 HIS E 17 REMARK 465 GLY E 18 REMARK 465 VAL E 143 REMARK 465 GLN E 144 REMARK 465 GLN E 145 REMARK 465 PRO E 146 REMARK 465 PRO E 147 REMARK 465 ASN E 148 REMARK 465 GLN E 149 REMARK 465 GLY F 331 REMARK 465 SER F 332 REMARK 465 GLY F 333 REMARK 465 PRO F 437 REMARK 465 ASP F 438 REMARK 465 ALA F 439 REMARK 465 ASP F 440 REMARK 465 MET I 1 REMARK 465 ASP I 2 REMARK 465 LEU I 3 REMARK 465 GLU I 4 REMARK 465 LYS I 5 REMARK 465 ASN I 6 REMARK 465 TYR I 7 REMARK 465 PRO I 8 REMARK 465 THR I 9 REMARK 465 PRO I 10 REMARK 465 ARG I 11 REMARK 465 THR I 12 REMARK 465 SER I 13 REMARK 465 ARG I 14 REMARK 465 THR I 15 REMARK 465 GLY I 16 REMARK 465 HIS I 17 REMARK 465 GLY I 18 REMARK 465 GLY I 19 REMARK 465 VAL I 20 REMARK 465 ASN I 21 REMARK 465 GLN I 22 REMARK 465 LEU I 23 REMARK 465 GLY I 24 REMARK 465 GLY I 25 REMARK 465 VAL I 26 REMARK 465 PHE I 27 REMARK 465 VAL I 28 REMARK 465 ASN I 29 REMARK 465 GLY I 30 REMARK 465 ARG I 31 REMARK 465 PRO I 32 REMARK 465 LEU I 33 REMARK 465 PRO I 34 REMARK 465 ASP I 35 REMARK 465 VAL I 36 REMARK 465 VAL I 37 REMARK 465 ARG I 38 REMARK 465 GLN I 39 REMARK 465 ARG I 40 REMARK 465 ILE I 41 REMARK 465 VAL I 42 REMARK 465 GLU I 43 REMARK 465 LEU I 44 REMARK 465 ALA I 45 REMARK 465 HIS I 46 REMARK 465 GLN I 47 REMARK 465 GLY I 48 REMARK 465 VAL I 49 REMARK 465 ARG I 50 REMARK 465 PRO I 51 REMARK 465 CYS I 52 REMARK 465 ASP I 53 REMARK 465 ILE I 54 REMARK 465 SER I 55 REMARK 465 ARG I 56 REMARK 465 GLN I 57 REMARK 465 LEU I 58 REMARK 465 ARG I 59 REMARK 465 VAL I 60 REMARK 465 SER I 61 REMARK 465 HIS I 62 REMARK 465 GLY I 63 REMARK 465 CYS I 64 REMARK 465 VAL I 65 REMARK 465 SER I 66 REMARK 465 LYS I 67 REMARK 465 ILE I 68 REMARK 465 LEU I 69 REMARK 465 GLY I 70 REMARK 465 ARG I 71 REMARK 465 TYR I 72 REMARK 465 TYR I 73 REMARK 465 GLU I 74 REMARK 465 THR I 75 REMARK 465 GLY I 76 REMARK 465 SER I 77 REMARK 465 ILE I 78 REMARK 465 LYS I 79 REMARK 465 PRO I 80 REMARK 465 GLY I 81 REMARK 465 VAL I 82 REMARK 465 ILE I 83 REMARK 465 LYS I 142 REMARK 465 VAL I 143 REMARK 465 GLN I 144 REMARK 465 GLN I 145 REMARK 465 PRO I 146 REMARK 465 PRO I 147 REMARK 465 ASN I 148 REMARK 465 GLN I 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS B 436 CG CD CE NZ REMARK 470 PRO F 334 CG CD REMARK 470 LYS F 436 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 150 O HOH B 460 4555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS E 142 N - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 141 -109.27 -78.98 REMARK 500 THR E 141 59.21 -155.00 REMARK 500 VAL I 90 -32.40 -137.32 REMARK 500 ALA I 91 37.63 -78.55 REMARK 500 ASN I 126 -7.44 -56.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C 14 0.05 SIDE CHAIN REMARK 500 DC D 22 0.07 SIDE CHAIN REMARK 500 DC H 22 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K79 RELATED DB: PDB REMARK 900 ETS-1(331-440)+GGAA DUPLEX REMARK 900 RELATED ID: 1K7A RELATED DB: PDB REMARK 900 ETS-1(331-440)+GGAG DUPLEX DBREF 1K78 A 1 149 UNP Q02548 PAX5_HUMAN 1 149 DBREF 1K78 E 1 149 UNP Q02548 PAX5_HUMAN 1 149 DBREF 1K78 I 1 149 UNP Q02548 PAX5_HUMAN 1 149 DBREF 1K78 B 331 440 UNP P27577 ETS1_MOUSE 331 440 DBREF 1K78 F 331 440 UNP P27577 ETS1_MOUSE 331 440 DBREF 1K78 C 1 27 PDB 1K78 1K78 1 27 DBREF 1K78 D 1 27 PDB 1K78 1K78 1 27 DBREF 1K78 G 1 27 PDB 1K78 1K78 1 27 DBREF 1K78 H 1 27 PDB 1K78 1K78 1 27 SEQRES 1 C 27 DT DT DG DT DG DC DC DG DG DA DG DA DT SEQRES 2 C 27 DG DG DG DC DT DC DC DA DG DT DG DG DC SEQRES 3 C 27 DC SEQRES 1 D 27 DA DA DG DG DC DC DA DC DT DG DG DA DG SEQRES 2 D 27 DC DC DC DA DT DC DT DC DC DG DG DC DA SEQRES 3 D 27 DC SEQRES 1 G 27 DT DT DG DT DG DC DC DG DG DA DG DA DT SEQRES 2 G 27 DG DG DG DC DT DC DC DA DG DT DG DG DC SEQRES 3 G 27 DC SEQRES 1 H 27 DA DA DG DG DC DC DA DC DT DG DG DA DG SEQRES 2 H 27 DC DC DC DA DT DC DT DC DC DG DG DC DA SEQRES 3 H 27 DC SEQRES 1 A 149 MET ASP LEU GLU LYS ASN TYR PRO THR PRO ARG THR SER SEQRES 2 A 149 ARG THR GLY HIS GLY GLY VAL ASN GLN LEU GLY GLY VAL SEQRES 3 A 149 PHE VAL ASN GLY ARG PRO LEU PRO ASP VAL VAL ARG GLN SEQRES 4 A 149 ARG ILE VAL GLU LEU ALA HIS GLN GLY VAL ARG PRO CYS SEQRES 5 A 149 ASP ILE SER ARG GLN LEU ARG VAL SER HIS GLY CYS VAL SEQRES 6 A 149 SER LYS ILE LEU GLY ARG TYR TYR GLU THR GLY SER ILE SEQRES 7 A 149 LYS PRO GLY VAL ILE GLY GLY SER LYS PRO LYS VAL ALA SEQRES 8 A 149 THR PRO LYS VAL VAL GLU LYS ILE ALA GLU TYR LYS ARG SEQRES 9 A 149 GLN ASN PRO THR MET PHE ALA TRP GLU ILE ARG ASP ARG SEQRES 10 A 149 LEU LEU ALA GLU ARG VAL CYS ASP ASN ASP THR VAL PRO SEQRES 11 A 149 SER VAL SER SER ILE ASN ARG ILE ILE ARG THR LYS VAL SEQRES 12 A 149 GLN GLN PRO PRO ASN GLN SEQRES 1 B 110 GLY SER GLY PRO ILE GLN LEU TRP GLN PHE LEU LEU GLU SEQRES 2 B 110 LEU LEU THR ASP LYS SER CYS GLN SER PHE ILE SER TRP SEQRES 3 B 110 THR GLY ASP GLY TRP GLU PHE LYS LEU SER ASP PRO ASP SEQRES 4 B 110 GLU VAL ALA ARG ARG TRP GLY LYS ARG LYS ASN LYS PRO SEQRES 5 B 110 LYS MET ASN TYR GLU LYS LEU SER ARG GLY LEU ARG TYR SEQRES 6 B 110 TYR TYR ASP LYS ASN ILE ILE HIS LYS THR ALA GLY LYS SEQRES 7 B 110 ARG TYR VAL TYR ARG PHE VAL CYS ASP LEU GLN SER LEU SEQRES 8 B 110 LEU GLY TYR THR PRO GLU GLU LEU HIS ALA MET LEU ASP SEQRES 9 B 110 VAL LYS PRO ASP ALA ASP SEQRES 1 E 149 MET ASP LEU GLU LYS ASN TYR PRO THR PRO ARG THR SER SEQRES 2 E 149 ARG THR GLY HIS GLY GLY VAL ASN GLN LEU GLY GLY VAL SEQRES 3 E 149 PHE VAL ASN GLY ARG PRO LEU PRO ASP VAL VAL ARG GLN SEQRES 4 E 149 ARG ILE VAL GLU LEU ALA HIS GLN GLY VAL ARG PRO CYS SEQRES 5 E 149 ASP ILE SER ARG GLN LEU ARG VAL SER HIS GLY CYS VAL SEQRES 6 E 149 SER LYS ILE LEU GLY ARG TYR TYR GLU THR GLY SER ILE SEQRES 7 E 149 LYS PRO GLY VAL ILE GLY GLY SER LYS PRO LYS VAL ALA SEQRES 8 E 149 THR PRO LYS VAL VAL GLU LYS ILE ALA GLU TYR LYS ARG SEQRES 9 E 149 GLN ASN PRO THR MET PHE ALA TRP GLU ILE ARG ASP ARG SEQRES 10 E 149 LEU LEU ALA GLU ARG VAL CYS ASP ASN ASP THR VAL PRO SEQRES 11 E 149 SER VAL SER SER ILE ASN ARG ILE ILE ARG THR LYS VAL SEQRES 12 E 149 GLN GLN PRO PRO ASN GLN SEQRES 1 F 110 GLY SER GLY PRO ILE GLN LEU TRP GLN PHE LEU LEU GLU SEQRES 2 F 110 LEU LEU THR ASP LYS SER CYS GLN SER PHE ILE SER TRP SEQRES 3 F 110 THR GLY ASP GLY TRP GLU PHE LYS LEU SER ASP PRO ASP SEQRES 4 F 110 GLU VAL ALA ARG ARG TRP GLY LYS ARG LYS ASN LYS PRO SEQRES 5 F 110 LYS MET ASN TYR GLU LYS LEU SER ARG GLY LEU ARG TYR SEQRES 6 F 110 TYR TYR ASP LYS ASN ILE ILE HIS LYS THR ALA GLY LYS SEQRES 7 F 110 ARG TYR VAL TYR ARG PHE VAL CYS ASP LEU GLN SER LEU SEQRES 8 F 110 LEU GLY TYR THR PRO GLU GLU LEU HIS ALA MET LEU ASP SEQRES 9 F 110 VAL LYS PRO ASP ALA ASP SEQRES 1 I 149 MET ASP LEU GLU LYS ASN TYR PRO THR PRO ARG THR SER SEQRES 2 I 149 ARG THR GLY HIS GLY GLY VAL ASN GLN LEU GLY GLY VAL SEQRES 3 I 149 PHE VAL ASN GLY ARG PRO LEU PRO ASP VAL VAL ARG GLN SEQRES 4 I 149 ARG ILE VAL GLU LEU ALA HIS GLN GLY VAL ARG PRO CYS SEQRES 5 I 149 ASP ILE SER ARG GLN LEU ARG VAL SER HIS GLY CYS VAL SEQRES 6 I 149 SER LYS ILE LEU GLY ARG TYR TYR GLU THR GLY SER ILE SEQRES 7 I 149 LYS PRO GLY VAL ILE GLY GLY SER LYS PRO LYS VAL ALA SEQRES 8 I 149 THR PRO LYS VAL VAL GLU LYS ILE ALA GLU TYR LYS ARG SEQRES 9 I 149 GLN ASN PRO THR MET PHE ALA TRP GLU ILE ARG ASP ARG SEQRES 10 I 149 LEU LEU ALA GLU ARG VAL CYS ASP ASN ASP THR VAL PRO SEQRES 11 I 149 SER VAL SER SER ILE ASN ARG ILE ILE ARG THR LYS VAL SEQRES 12 I 149 GLN GLN PRO PRO ASN GLN FORMUL 10 HOH *484(H2 O) HELIX 1 1 ASP A 35 GLN A 47 1 13 HELIX 2 2 PRO A 51 LEU A 58 1 8 HELIX 3 3 HIS A 62 THR A 75 1 14 HELIX 4 4 PRO A 93 GLN A 105 1 13 HELIX 5 5 ALA A 111 GLU A 121 1 11 HELIX 6 6 VAL A 132 ARG A 140 1 9 HELIX 7 7 LEU B 337 THR B 346 1 10 HELIX 8 8 PRO B 368 LYS B 379 1 12 HELIX 9 9 TYR B 386 TYR B 396 1 11 HELIX 10 10 LEU B 418 LEU B 422 1 5 HELIX 11 11 PRO B 426 LEU B 433 1 8 HELIX 12 12 ASP E 35 GLN E 47 1 13 HELIX 13 13 PRO E 51 LEU E 58 1 8 HELIX 14 14 HIS E 62 THR E 75 1 14 HELIX 15 15 PRO E 93 GLN E 105 1 13 HELIX 16 16 ALA E 111 GLU E 121 1 11 HELIX 17 17 VAL E 132 ARG E 140 1 9 HELIX 18 18 LEU F 337 THR F 346 1 10 HELIX 19 20 TYR F 386 TYR F 396 1 11 HELIX 20 21 LEU F 418 LEU F 422 1 5 HELIX 21 22 PRO F 426 LEU F 433 1 8 HELIX 22 23 PRO I 93 GLN I 105 1 13 HELIX 23 24 ALA I 111 GLU I 121 1 11 HELIX 24 25 VAL I 132 ARG I 140 1 9 SHEET 1 A 2 GLY A 19 ASN A 21 0 SHEET 2 A 2 GLY A 25 PHE A 27 -1 O GLY A 25 N ASN A 21 SHEET 1 B 4 ILE B 354 TRP B 356 0 SHEET 2 B 4 GLU B 362 LYS B 364 -1 N LYS B 364 O SER B 355 SHEET 3 B 4 ILE B 402 LYS B 404 -1 O HIS B 403 N ARG B 413 SHEET 4 B 4 VAL B 411 PHE B 414 -1 N TYR B 412 O PHE B 363 SHEET 1 C 2 GLY E 19 ASN E 21 0 SHEET 2 C 2 GLY E 25 PHE E 27 -1 O GLY E 25 N ASN E 21 SHEET 1 D 4 ILE F 354 TRP F 356 0 SHEET 2 D 4 GLU F 362 LYS F 364 -1 N LYS F 364 O SER F 355 SHEET 3 D 4 ILE F 402 LYS F 404 -1 O HIS F 403 N ARG F 413 SHEET 4 D 4 VAL F 411 PHE F 414 -1 N TYR F 412 O PHE F 363 CRYST1 77.840 89.750 170.740 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005857 0.00000