PDB Short entry for 1KB5 HEADER COMPLEX (IMMUNOGLOBULIN/RECEPTOR) 06-APR-97 1KB5 TITLE MURINE T-CELL RECEPTOR VARIABLE DOMAIN/FAB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: KB5-C20 T-CELL ANTIGEN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FV FRAGMENT, VARIABLE DOMAIN; COMPND 5 SYNONYM: TCR VAPLHA VBETA DOMAIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: 24 RESIDUE LINK BETWEEN VALPHA C-TERMINUS AND VBETA N- COMPND 8 TERMINUS; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: KB5-C20 T-CELL ANTIGEN RECEPTOR; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: FV FRAGMENT, VARIABLE DOMAIN; COMPND 13 SYNONYM: TCR VAPLHA VBETA DOMAIN; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: 24 RESIDUE LINK BETWEEN VALPHA C-TERMINUS AND VBETA N- COMPND 16 TERMINUS; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: ANTIBODY DESIRE-1; COMPND 19 CHAIN: L; COMPND 20 FRAGMENT: FAB; COMPND 21 OTHER_DETAILS: CLEAVED BY PAPAIN; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: ANTIBODY DESIRE-1; COMPND 24 CHAIN: H; COMPND 25 FRAGMENT: FAB; COMPND 26 OTHER_DETAILS: CLEAVED BY PAPAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: T-CELL; SOURCE 6 CELLULAR_LOCATION: SURFACE; SOURCE 7 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: MYELOMA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 CELL: T-CELL; SOURCE 16 CELLULAR_LOCATION: SURFACE; SOURCE 17 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM_CELLULAR_LOCATION: MYELOMA; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 STRAIN: IGG2A; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 28 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 29 ORGANISM_TAXID: 10090; SOURCE 30 STRAIN: IGG2A KEYWDS T-CELL RECEPTOR, STRAND SWITCH, FAB, ANTICLONOTYPIC, KEYWDS 2 (IMMUNOGLOBULIN/RECEPTOR), COMPLEX (IMMUNOGLOBULIN-RECEPTOR) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.HOUSSET,G.MAZZA,C.GREGOIRE,C.PIRAS,B.MALISSEN,J.C.FONTECILLA-CAMPS REVDAT 5 09-AUG-23 1KB5 1 SEQADV REVDAT 4 11-APR-18 1KB5 1 REMARK REVDAT 3 04-APR-18 1KB5 1 REMARK REVDAT 2 24-FEB-09 1KB5 1 VERSN REVDAT 1 08-APR-98 1KB5 0 JRNL AUTH D.HOUSSET,G.MAZZA,C.GREGOIRE,C.PIRAS,B.MALISSEN, JRNL AUTH 2 J.C.FONTECILLA-CAMPS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF A T-CELL ANTIGEN RECEPTOR JRNL TITL 2 V ALPHA V BETA HETERODIMER REVEALS A NOVEL ARRANGEMENT OF JRNL TITL 3 THE V BETA DOMAIN. JRNL REF EMBO J. V. 16 4205 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9250664 JRNL DOI 10.1093/EMBOJ/16.14.4205 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.C.GARCIA,M.DEGANO,R.L.STANFIELD,A.BRUNMARK,M.R.JACKSON, REMARK 1 AUTH 2 P.A.PETERSON,L.TEYTON,I.A.WILSON REMARK 1 TITL AN ALPHABETA T CELL RECEPTOR STRUCTURE AT 2.5 A AND ITS REMARK 1 TITL 2 ORIENTATION IN THE TCR-MHC COMPLEX REMARK 1 REF SCIENCE V. 274 209 1996 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.N.GARBOCZI,P.GHOSH,U.UTZ,Q.R.FAN,W.E.BIDDISON,D.C.WILEY REMARK 1 TITL STRUCTURE OF THE COMPLEX BETWEEN HUMAN T-CELL RECEPTOR, REMARK 1 TITL 2 VIRAL PEPTIDE AND HLA-A2 REMARK 1 REF NATURE V. 384 134 1996 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH G.A.BENTLEY,G.BOULOT,K.KARJALAINEN,R.A.MARIUZZA REMARK 1 TITL CRYSTAL STRUCTURE OF THE BETA CHAIN OF A T CELL ANTIGEN REMARK 1 TITL 2 RECEPTOR REMARK 1 REF SCIENCE V. 267 1984 1995 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 4 REMARK 1 AUTH B.A.FIELDS,B.OBER,E.L.MALCHIODI,M.I.LEBEDEVA,B.C.BRADEN, REMARK 1 AUTH 2 X.YSERN,J.K.KIM,X.SHAO,E.S.WARD,R.A.MARIUZZA REMARK 1 TITL CRYSTAL STRUCTURE OF THE V ALPHA DOMAIN OF A T CELL ANTIGEN REMARK 1 TITL 2 RECEPTOR REMARK 1 REF SCIENCE V. 270 1821 1995 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 5 REMARK 1 AUTH C.GREGOIRE,N.REBAI,F.SCHWEISGUTH,A.NECKER,G.MAZZA,N.AUPHAN, REMARK 1 AUTH 2 A.MILLWARD,A.M.SCHMITT-VERHULST,B.MALISSEN REMARK 1 TITL ENGINEERED SECRETED T-CELL RECEPTOR ALPHA BETA HETERODIMERS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 88 8077 1991 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 20232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.034 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.112 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.014 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.213 ; 0.200 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.590 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.120 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.750 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.260 ; 2.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION USED R VALUE REMARK 3 (WORKING + TEST SET) : 0.221 REMARK 4 REMARK 4 1KB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.9-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : SI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39500 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1VFA, 1MLB, 1FLR, 1BEC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG6000, 100MM HEPES PH 6.9-7.5, REMARK 280 200MM NACL, 0.1% NAN3, PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 93.65500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 93.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 61 O ASP A 79 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ASP L 1 ND2 ASN L 157 3558 1.76 REMARK 500 OE2 GLU L 17 O GLY L 152 3557 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 4 CD - NE - CZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PRO A 7 N - CA - CB ANGL. DEV. = 8.6 DEGREES REMARK 500 TYR A 31 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 61 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 69 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU A 73 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 HIS A 76 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 93 CD - NE - CZ ANGL. DEV. = 28.0 DEGREES REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLY A 117 C - N - CA ANGL. DEV. = 38.6 DEGREES REMARK 500 SER A 118 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 THR B 2 N - CA - CB ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO B 8 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 64 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 86 CD - NE - CZ ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 VAL B 116 C - N - CA ANGL. DEV. = 47.7 DEGREES REMARK 500 PRO L 8 N - CA - CB ANGL. DEV. = 7.0 DEGREES REMARK 500 ALA L 9 CB - CA - C ANGL. DEV. = 9.0 DEGREES REMARK 500 VAL L 19 N - CA - CB ANGL. DEV. = 16.4 DEGREES REMARK 500 ILE L 29 CA - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG L 61 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 HIS L 91 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO L 95 N - CA - CB ANGL. DEV. = 8.5 DEGREES REMARK 500 LEU L 104 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 LYS L 107 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR L 140 CA - C - O ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO L 141 N - CA - CB ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG L 211 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG L 211 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 CYS L 214 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG H 66 CD - NE - CZ ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG H 94 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG H 94 NE - CZ - NH2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP H 98 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP H 101 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO H 147 N - CA - CB ANGL. DEV. = 6.9 DEGREES REMARK 500 LEU H 152 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO H 189 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 -165.49 -70.84 REMARK 500 SER A 9 105.01 -163.95 REMARK 500 PHE A 32 79.69 -119.27 REMARK 500 PRO A 39 130.54 -29.65 REMARK 500 SER A 53 136.57 -179.35 REMARK 500 ASN A 67 55.97 -116.61 REMARK 500 LYS A 68 -69.37 -25.00 REMARK 500 ILE A 77 78.42 -106.12 REMARK 500 ALA A 86 -171.62 169.49 REMARK 500 SER A 115 19.20 91.42 REMARK 500 SER A 118 -172.39 47.56 REMARK 500 ALA A 119 65.22 74.08 REMARK 500 THR B 2 -93.58 168.26 REMARK 500 TRP B 10 51.18 -118.59 REMARK 500 ARG B 15 -56.30 169.75 REMARK 500 ALA B 63 144.97 -178.46 REMARK 500 THR B 71 -157.89 -128.07 REMARK 500 ASN B 81 16.07 88.38 REMARK 500 TRP B 100 -3.02 78.74 REMARK 500 ALA B 102 -46.08 1.78 REMARK 500 LEU L 11 147.26 179.58 REMARK 500 TYR L 30 -86.55 -102.20 REMARK 500 ALA L 51 -39.73 37.18 REMARK 500 THR L 69 -1.11 -143.61 REMARK 500 THR L 126 -54.99 -27.18 REMARK 500 PRO L 141 -169.11 -59.95 REMARK 500 THR L 164 -169.71 -70.85 REMARK 500 GLN L 166 130.35 -37.23 REMARK 500 SER L 171 14.47 81.82 REMARK 500 THR L 200 4.31 -66.55 REMARK 500 PRO H 14 116.55 -36.02 REMARK 500 CYS H 22 87.02 -161.92 REMARK 500 LYS H 43 -137.35 -87.47 REMARK 500 SER H 82B 58.26 28.36 REMARK 500 SER H 87 104.28 -56.85 REMARK 500 THR H 107 110.32 -160.43 REMARK 500 SER H 113 -64.07 -91.89 REMARK 500 ALA H 114 139.99 -24.75 REMARK 500 VAL H 127 -86.23 -11.01 REMARK 500 CYS H 128 107.15 179.22 REMARK 500 ASP H 130 42.15 77.78 REMARK 500 THR H 131 -160.90 -76.79 REMARK 500 THR H 132 -146.45 -97.20 REMARK 500 LEU H 159 59.56 -103.25 REMARK 500 HIS H 164 87.98 -157.23 REMARK 500 SER H 172 72.71 30.71 REMARK 500 ASP H 173 17.10 53.48 REMARK 500 VAL H 183 -168.20 -114.09 REMARK 500 SER H 185 -6.89 -52.19 REMARK 500 HIS H 199 87.35 -157.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE TCR FV FRAGMENT AND THE VARIABLE REGIONS OF THE FAB REMARK 999 DESIRE-1 HAVE BEEN NUMBERED AS DESCRIBED IN KABAT ET AL., REMARK 999 1991. A FEW DISORDERED SIDE CHAINS LOCATED AT THE SURFACE REMARK 999 HAVE A 0.5 OCCUPANCY. REMARK 999 REMARK 999 ASP A 120 IS THE FIRST RESIDUE OF THE LINKER BETWEEN REMARK 999 VALPHA AND VBETA CHAINS. DBREF 1KB5 A 1 116 GB 554285 AAA63396 30 140 DBREF 1KB5 B 1 116 UNP P04214 TVB6_MOUSE 22 116 DBREF 1KB5 L 3 214 UNP P01837 KAC_MOUSE 1 106 DBREF 1KB5 H 115 213 UNP P01865 GCAM_MOUSE 1 99 SEQADV 1KB5 TRP B 100 UNP P04214 INSERTION SEQADV 1KB5 GLY B 101 UNP P04214 TYR 120 CONFLICT SEQADV 1KB5 ALA B 102 UNP P04214 ASN 121 CONFLICT SEQADV 1KB5 ALA B 104 UNP P04214 INSERTION SEQADV 1KB5 GLU B 105 UNP P04214 INSERTION SEQADV 1KB5 THR B 105A UNP P04214 PRO 123 CONFLICT SEQADV 1KB5 GLY B 109 UNP P04214 ALA 127 CONFLICT SEQADV 1KB5 SER B 110 UNP P04214 ALA 128 CONFLICT SEQADV 1KB5 LYS L 27 UNP P01837 GLU 27 CONFLICT SEQADV 1KB5 GLY L 55 UNP P01837 ALA 55 CONFLICT SEQADV 1KB5 TYR L 96 UNP P01837 LEU 96 CONFLICT SEQADV 1KB5 GLY L 100 UNP P01837 ALA 100 CONFLICT SEQADV 1KB5 ILE L 106 UNP P01837 LEU 106 CONFLICT SEQRES 1 A 115 GLN GLN VAL ARG GLN SER PRO GLN SER LEU THR VAL TRP SEQRES 2 A 115 GLU GLY GLU THR ALA ILE LEU ASN CYS SER TYR GLU ASP SEQRES 3 A 115 SER THR PHE ASN TYR PHE PRO TRP TYR GLN GLN PHE PRO SEQRES 4 A 115 GLY GLU GLY PRO ALA LEU LEU ILE SER ILE ARG SER VAL SEQRES 5 A 115 SER ASP LYS LYS GLU ASP GLY ARG PHE THR ILE PHE PHE SEQRES 6 A 115 ASN LYS ARG GLU LYS LYS LEU SER LEU HIS ILE THR ASP SEQRES 7 A 115 SER GLN PRO GLY ASP SER ALA THR TYR PHE CYS ALA ALA SEQRES 8 A 115 ARG TYR GLN GLY GLY ARG ALA LEU ILE PHE GLY THR GLY SEQRES 9 A 115 THR THR VAL SER VAL SER PRO GLY SER ALA ASP SEQRES 1 B 117 VAL THR LEU LEU GLU GLN ASN PRO ARG TRP ARG LEU VAL SEQRES 2 B 117 PRO ARG GLY GLN ALA VAL ASN LEU ARG CYS ILE LEU LYS SEQRES 3 B 117 ASN SER GLN TYR PRO TRP MET SER TRP TYR GLN GLN ASP SEQRES 4 B 117 LEU GLN LYS GLN LEU GLN TRP LEU PHE THR LEU ARG SER SEQRES 5 B 117 PRO GLY ASP LYS GLU VAL LYS SER LEU PRO GLY ALA ASP SEQRES 6 B 117 TYR LEU ALA THR ARG VAL THR ASP THR GLU LEU ARG LEU SEQRES 7 B 117 GLN VAL ALA ASN MET SER GLN GLY ARG THR LEU TYR CYS SEQRES 8 B 117 THR CYS SER ALA ALA PRO ASP TRP GLY ALA SER ALA GLU SEQRES 9 B 117 THR LEU TYR PHE GLY SER GLY THR ARG LEU THR VAL LEU SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO ALA SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 LYS ASN ILE TYR SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 GLN GLY LYS SER PRO GLN LEU LEU VAL TYR ASN ALA LYS SEQRES 5 L 214 THR LEU GLY GLU GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR GLN PHE SER LEU LYS ILE ASN SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE GLY SER TYR TYR CYS GLN HIS HIS SEQRES 8 L 214 TYR GLY THR PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 219 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU GLU LYS SEQRES 2 H 219 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 219 TYR SER PHE THR GLY TYR ASN MET ASN TRP VAL LYS GLN SEQRES 4 H 219 SER ASN GLY LYS SER LEU GLU TRP ILE GLY ASN ILE ASP SEQRES 5 H 219 PRO TYR TYR GLY GLY ILE SER TYR ASN GLN LYS PHE LYS SEQRES 6 H 219 GLY ARG ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 219 ALA TYR MET GLN LEU LYS SER LEU THR SER GLU ASP SER SEQRES 8 H 219 ALA VAL TYR TYR CYS ALA ARG SER ARG THR ASP LEU TYR SEQRES 9 H 219 TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SEQRES 10 H 219 SER SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 H 219 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 H 219 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 219 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 219 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 219 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 H 219 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 219 SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG FORMUL 5 HOH *266(H2 O) HELIX 1 1 LYS A 68 GLU A 70 5 3 HELIX 2 2 PRO A 82 ASP A 84 5 3 HELIX 3 3 PRO L 80 ASP L 82 5 3 HELIX 4 4 SER L 122 SER L 127 1 6 HELIX 5 5 LYS L 183 GLU L 187 1 5 HELIX 6 6 SER H 40 GLY H 42 5 3 HELIX 7 7 PRO H 200 SER H 202 5 3 SHEET 1 A 5 VAL A 3 SER A 6 0 SHEET 2 A 5 ALA A 18 TYR A 24 -1 N SER A 23 O ARG A 4 SHEET 3 A 5 LYS A 72 ILE A 77 -1 N ILE A 77 O ALA A 18 SHEET 4 A 5 PHE A 62 ASN A 67 -1 N ASN A 67 O LYS A 72 SHEET 5 A 5 LYS A 55 ASP A 58 -1 N ASP A 58 O PHE A 62 SHEET 1 B 5 SER A 9 VAL A 12 0 SHEET 2 B 5 THR A 110 VAL A 114 1 N THR A 111 O LEU A 10 SHEET 3 B 5 ALA A 86 PHE A 89 -1 N TYR A 88 O THR A 110 SHEET 4 B 5 TRP A 34 GLN A 37 -1 N GLN A 37 O THR A 87 SHEET 5 B 5 ALA A 44 ILE A 47 -1 N ILE A 47 O TRP A 34 SHEET 1 C 5 LEU B 4 ASN B 7 0 SHEET 2 C 5 ASN B 20 LEU B 25 -1 N ILE B 24 O GLU B 5 SHEET 3 C 5 GLU B 74 ALA B 80 -1 N LEU B 77 O LEU B 21 SHEET 4 C 5 ALA B 63 ARG B 69 -1 N THR B 68 O ARG B 76 SHEET 5 C 5 ASP B 54 LEU B 60 -1 N LEU B 60 O ALA B 63 SHEET 1 D 4 THR B 112 LEU B 114 0 SHEET 2 D 4 ARG B 86 SER B 95 -1 N LEU B 90 O THR B 112 SHEET 3 D 4 TRP B 31 GLN B 37 -1 N GLN B 37 O THR B 87 SHEET 4 D 4 LEU B 43 LEU B 49 -1 N LEU B 49 O MET B 32 SHEET 1 E 2 THR B 93 SER B 95 0 SHEET 2 E 2 LEU B 106 PHE B 108 -1 N TYR B 107 O CYS B 94 SHEET 1 F 4 THR L 5 SER L 7 0 SHEET 2 F 4 VAL L 19 ARG L 24 -1 N ARG L 24 O THR L 5 SHEET 3 F 4 GLN L 70 ILE L 75 -1 N ILE L 75 O VAL L 19 SHEET 4 F 4 PHE L 62 SER L 67 -1 N SER L 67 O GLN L 70 SHEET 1 G 5 SER L 10 SER L 12 0 SHEET 2 G 5 THR L 102 GLU L 105 1 N LYS L 103 O LEU L 11 SHEET 3 G 5 GLY L 84 HIS L 90 -1 N TYR L 86 O THR L 102 SHEET 4 G 5 LEU L 33 GLN L 38 -1 N GLN L 38 O SER L 85 SHEET 5 G 5 GLN L 45 VAL L 48 -1 N VAL L 48 O TRP L 35 SHEET 1 H 4 THR L 114 PHE L 118 0 SHEET 2 H 4 ALA L 130 ASN L 137 -1 N ASN L 137 O THR L 114 SHEET 3 H 4 MET L 175 LEU L 181 -1 N LEU L 181 O ALA L 130 SHEET 4 H 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 I 3 ASN L 145 ILE L 150 0 SHEET 2 I 3 SER L 191 THR L 197 -1 N THR L 197 O ASN L 145 SHEET 3 I 3 ILE L 205 ASN L 210 -1 N PHE L 209 O TYR L 192 SHEET 1 J 4 GLN H 3 GLN H 6 0 SHEET 2 J 4 VAL H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 J 4 THR H 77 LEU H 82 -1 N LEU H 82 O VAL H 18 SHEET 4 J 4 ALA H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 K 2 GLU H 10 GLU H 12 0 SHEET 2 K 2 LEU H 109 VAL H 111 1 N THR H 110 O GLU H 10 SHEET 1 L 4 TYR H 90 SER H 95 0 SHEET 2 L 4 ASN H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 3 L 4 LEU H 45 ASP H 52 -1 N ILE H 51 O MET H 34 SHEET 4 L 4 ILE H 57 TYR H 59 -1 N SER H 58 O ASN H 50 SHEET 1 M 4 SER H 120 LEU H 124 0 SHEET 2 M 4 VAL H 136 TYR H 145 -1 N LYS H 143 O SER H 120 SHEET 3 M 4 TYR H 175 VAL H 183 -1 N VAL H 183 O VAL H 136 SHEET 4 M 4 VAL H 163 PHE H 166 -1 N PHE H 166 O SER H 178 SHEET 1 N 3 THR H 151 TRP H 154 0 SHEET 2 N 3 THR H 194 HIS H 199 -1 N ALA H 198 O THR H 151 SHEET 3 N 3 THR H 204 LYS H 209 -1 N LYS H 208 O CYS H 195 SHEET 1 O 2 VAL H 169 GLN H 171 0 SHEET 2 O 2 LEU H 174 THR H 176 -1 N THR H 176 O VAL H 169 SSBOND 1 CYS A 22 CYS A 90 1555 1555 1.94 SSBOND 2 CYS B 23 CYS B 92 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 5 CYS L 214 CYS H 128 1555 1555 2.03 SSBOND 6 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 7 CYS H 140 CYS H 195 1555 1555 2.02 CISPEP 1 SER A 6 PRO A 7 0 -0.71 CISPEP 2 ASN B 7 PRO B 8 0 -0.82 CISPEP 3 SER L 7 PRO L 8 0 -6.22 CISPEP 4 THR L 94 PRO L 95 0 -4.47 CISPEP 5 TYR L 140 PRO L 141 0 0.91 CISPEP 6 PHE H 146 PRO H 147 0 -2.85 CISPEP 7 TRP H 188 PRO H 189 0 4.17 CRYST1 187.310 80.950 52.080 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019201 0.00000