PDB Short entry for 1KG0 HEADER VIRAL PROTEIN/IMMUNE SYSTEM 25-NOV-01 1KG0 TITLE STRUCTURE OF THE EPSTEIN-BARR VIRUS GP42 PROTEIN BOUND TO THE MHC TITLE 2 CLASS II RECEPTOR HLA-DR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS II RECEPTOR HLA-DR1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA CHAIN, EXTRACELLULAR DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MHC CLASS II RECEPTOR HLA-DR1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: BETA CHAIN, EXTRACELLULAR DOMAIN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEMAGGLUTININ HA PEPTIDE; COMPND 13 CHAIN: D; COMPND 14 FRAGMENT: ANTIGENIC PEPTIDE; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: GP42 PROTEIN; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 OTHER_DETAILS: SYNTHETIC PEPTIDE DERIVED FROM INFLUENZA SOURCE 18 HEMAGGLUTININ SEQUENCE; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 21 ORGANISM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 22 ORGANISM_TAXID: 10376; SOURCE 23 STRAIN: GD1; SOURCE 24 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 25 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 28 EXPRESSION_SYSTEM_PLASMID: PBAC-GUS3 KEYWDS VIRUS, C-TYPE LECTIN DOMAIN, MEMBRANE FUSION, MHC, VIRAL PROTEIN- KEYWDS 2 IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.M.MULLEN,K.M.HAAN,R.LONGNECKER,T.S.JARDETZKY REVDAT 3 23-NOV-16 1KG0 1 ATOM SEQADV SEQRES VERSN REVDAT 2 24-FEB-09 1KG0 1 VERSN REVDAT 1 27-MAR-02 1KG0 0 JRNL AUTH M.M.MULLEN,K.M.HAAN,R.LONGNECKER,T.S.JARDETZKY JRNL TITL STRUCTURE OF THE EPSTEIN-BARR VIRUS GP42 PROTEIN BOUND TO JRNL TITL 2 THE MHC CLASS II RECEPTOR HLA-DR1. JRNL REF MOL.CELL V. 9 375 2002 JRNL REFN ISSN 1097-2765 JRNL PMID 11864610 JRNL DOI 10.1016/S1097-2765(02)00465-3 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 616 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.580 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 101 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM ACETATE, SODIUM REMARK 280 CHLORIDE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.50000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.50000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.50000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.50000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.50000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 135 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 104 O HOH B 255 0.87 REMARK 500 C SER B 104 O HOH B 255 1.65 REMARK 500 OD2 ASP B 43 O HOH B 285 2.01 REMARK 500 OE2 GLU A 141 O HOH A 351 2.01 REMARK 500 O THR D 318 O HOH D 431 2.01 REMARK 500 OE1 GLU C 207 O HOH C 386 2.02 REMARK 500 OE2 GLU B 69 O HOH B 301 2.05 REMARK 500 OE1 GLU A 3 O HOH A 315 2.05 REMARK 500 OE1 GLN B 34 O HOH B 208 2.05 REMARK 500 OD1 ASP A 25 O HOH A 192 2.06 REMARK 500 OG SER B 104 O HOH B 242 2.07 REMARK 500 OE1 GLU B 138 O HOH B 224 2.07 REMARK 500 OD1 ASP A 181 O HOH A 264 2.07 REMARK 500 NH2 ARG A 76 O HOH A 411 2.07 REMARK 500 O GLY A 49 O HOH A 259 2.07 REMARK 500 OE1 GLU A 88 O HOH A 374 2.07 REMARK 500 OH TYR D 308 O HOH D 459 2.07 REMARK 500 O ALA C 158 O HOH C 338 2.07 REMARK 500 NZ LYS D 315 O HOH D 470 2.08 REMARK 500 O VAL A 91 O HOH A 272 2.09 REMARK 500 N THR B 3 O HOH B 323 2.09 REMARK 500 O TRP B 61 O HOH B 355 2.09 REMARK 500 O HOH C 267 O HOH C 330 2.09 REMARK 500 O HOH A 202 O HOH A 318 2.10 REMARK 500 O HOH A 207 O HOH A 316 2.10 REMARK 500 O HOH A 207 O HOH A 342 2.11 REMARK 500 O HOH B 268 O HOH C 372 2.11 REMARK 500 N PHE A 51 O HOH A 259 2.11 REMARK 500 NE ARG C 168 O HOH C 262 2.11 REMARK 500 N GLU A 3 O HOH A 409 2.11 REMARK 500 O GLN D 311 O HOH D 461 2.12 REMARK 500 O HOH A 227 O HOH A 379 2.12 REMARK 500 CB THR C 119 O HOH C 316 2.13 REMARK 500 ND2 ASN B 113 O HOH B 217 2.13 REMARK 500 O HOH B 237 O HOH B 312 2.13 REMARK 500 O GLY C 189 O HOH C 250 2.13 REMARK 500 O HOH C 222 O HOH C 308 2.13 REMARK 500 OE2 GLU B 169 O HOH B 228 2.13 REMARK 500 O HOH B 227 O HOH D 601 2.14 REMARK 500 CA CYS B 15 O HOH B 365 2.14 REMARK 500 O HOH A 410 O HOH B 267 2.14 REMARK 500 O SER B 42 O HOH B 289 2.14 REMARK 500 NE2 GLN C 186 O HOH C 284 2.14 REMARK 500 CG GLU A 3 O HOH A 355 2.14 REMARK 500 O HOH C 227 O HOH C 322 2.14 REMARK 500 O HOH A 235 O HOH A 393 2.14 REMARK 500 O HOH A 202 O HOH A 352 2.14 REMARK 500 N ASN C 157 O HOH C 385 2.15 REMARK 500 OE1 GLU B 96 O HOH B 281 2.15 REMARK 500 NE ARG B 71 O HOH B 265 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 81 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 347 O HOH B 347 9765 2.06 REMARK 500 NE2 GLN B 174 O HOH C 382 12555 2.10 REMARK 500 O HOH B 287 O HOH C 342 12555 2.11 REMARK 500 O HOH B 344 O HOH C 263 3665 2.12 REMARK 500 NE2 GLN C 92 O HOH C 272 11655 2.12 REMARK 500 O HOH A 385 O HOH B 245 9765 2.13 REMARK 500 OE2 GLU B 52 OE2 GLU B 52 9765 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 105 CA - CB - CG ANGL. DEV. = 25.3 DEGREES REMARK 500 LYS B 105 CB - CG - CD ANGL. DEV. = 22.5 DEGREES REMARK 500 GLY C 113 N - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 HIS C 191 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 -54.60 -132.72 REMARK 500 THR A 113 148.82 -175.74 REMARK 500 THR A 130 100.90 -50.08 REMARK 500 THR B 21 -2.33 -154.68 REMARK 500 ASN B 33 -95.55 61.60 REMARK 500 TYR B 78 -68.42 -121.69 REMARK 500 THR B 90 -74.96 -121.83 REMARK 500 GLN B 110 -8.45 70.94 REMARK 500 PRO B 178 2.92 -50.29 REMARK 500 CYS C 102 116.41 -172.00 REMARK 500 LYS C 112 -145.59 58.32 REMARK 500 VAL C 169 -67.15 -173.91 REMARK 500 GLU C 171 68.53 64.62 REMARK 500 ASN C 173 -9.65 84.34 REMARK 500 THR C 175 -163.00 -129.87 REMARK 500 PHE C 188 -148.39 -123.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS C 191 22.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 328 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH A 375 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B 328 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH B 336 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH B 357 DISTANCE = 5.27 ANGSTROMS DBREF 1KG0 A 3 182 UNP P01903 2DRA_HUMAN 28 207 DBREF 1KG0 B 3 190 UNP P04229 2B11_HUMAN 32 219 DBREF 1KG0 C 86 221 UNP P03205 YZL2_EBV 86 221 DBREF 1KG0 D 306 318 PDB 1KG0 1KG0 306 318 SEQRES 1 A 180 GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR LEU ASN SEQRES 2 A 180 PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE ASP GLY SEQRES 3 A 180 ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS GLU THR SEQRES 4 A 180 VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SER PHE SEQRES 5 A 180 GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL ASP LYS SEQRES 6 A 180 ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN TYR THR SEQRES 7 A 180 PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL LEU THR SEQRES 8 A 180 ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL LEU ILE SEQRES 9 A 180 CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL ASN VAL SEQRES 10 A 180 THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR GLY VAL SEQRES 11 A 180 SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS LEU PHE SEQRES 12 A 180 ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER THR GLU SEQRES 13 A 180 ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY LEU ASP SEQRES 14 A 180 GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP ALA SEQRES 1 B 188 THR ARG PRO ARG PHE LEU TRP GLN LEU LYS PHE GLU CYS SEQRES 2 B 188 HIS PHE PHE ASN GLY THR GLU ARG VAL ARG LEU LEU GLU SEQRES 3 B 188 ARG CYS ILE TYR ASN GLN GLU GLU SER VAL ARG PHE ASP SEQRES 4 B 188 SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU LEU GLY SEQRES 5 B 188 ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS ASP LEU SEQRES 6 B 188 LEU GLU GLN ARG ARG ALA ALA VAL ASP THR TYR CYS ARG SEQRES 7 B 188 HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL GLN ARG SEQRES 8 B 188 ARG VAL GLU PRO LYS VAL THR VAL TYR PRO SER LYS THR SEQRES 9 B 188 GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SER VAL SEQRES 10 B 188 SER GLY PHE TYR PRO GLY SER ILE GLU VAL ARG TRP PHE SEQRES 11 B 188 ARG ASN GLY GLN GLU GLU LYS ALA GLY VAL VAL SER THR SEQRES 12 B 188 GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN THR LEU SEQRES 13 B 188 VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU VAL TYR SEQRES 14 B 188 THR CYS GLN VAL GLU HIS PRO SER VAL THR SER PRO LEU SEQRES 15 B 188 THR VAL GLU TRP ARG ALA SEQRES 1 D 13 PRO LYS TYR VAL LYS GLN ASN THR LEU LYS LEU ALA THR SEQRES 1 C 136 HIS THR PHE GLN VAL PRO GLN ASN TYR THR LYS ALA ASN SEQRES 2 C 136 CYS THR TYR CYS ASN THR ARG GLU TYR THR PHE SER TYR SEQRES 3 C 136 LYS GLY CYS CYS PHE TYR PHE THR LYS LYS LYS HIS THR SEQRES 4 C 136 TRP ASN GLY CYS PHE GLN ALA CYS ALA GLU LEU TYR PRO SEQRES 5 C 136 CYS THR TYR PHE TYR GLY PRO THR PRO ASP ILE LEU PRO SEQRES 6 C 136 VAL VAL THR ARG ASN LEU ASN ALA ILE GLU SER LEU TRP SEQRES 7 C 136 VAL GLY VAL TYR ARG VAL GLY GLU GLY ASN TRP THR SER SEQRES 8 C 136 LEU ASP GLY GLY THR PHE LYS VAL TYR GLN ILE PHE GLY SEQRES 9 C 136 SER HIS CYS THR TYR VAL SER LYS PHE SER THR VAL PRO SEQRES 10 C 136 VAL SER HIS HIS GLU CYS SER PHE LEU LYS PRO CYS LEU SEQRES 11 C 136 CYS VAL SER GLN ARG SER FORMUL 5 HOH *616(H2 O) HELIX 1 1 LEU A 45 ARG A 50 1 6 HELIX 2 2 GLU A 55 SER A 77 1 23 HELIX 3 3 THR B 51 LEU B 53 5 3 HELIX 4 4 GLY B 54 ASN B 62 1 9 HELIX 5 5 GLN B 64 TYR B 78 1 15 HELIX 6 6 TYR B 78 SER B 88 1 11 HELIX 7 7 ASN C 126 TYR C 136 1 11 HELIX 8 8 ILE C 148 ASN C 155 1 8 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 ASN A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 A 8 PHE B 7 PHE B 18 -1 O PHE B 13 N GLN A 9 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O LEU B 27 N GLU B 14 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 THR A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 B 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 THR A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 D 4 LYS A 126 PRO A 127 0 SHEET 2 D 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 D 4 VAL A 160 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 D 4 LEU A 174 GLU A 179 -1 O TRP A 178 N TYR A 161 SHEET 1 E 4 LYS B 98 PRO B 103 0 SHEET 2 E 4 ASN B 113 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 E 4 PHE B 155 THR B 163 -1 O THR B 163 N ASN B 113 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 LYS B 98 PRO B 103 0 SHEET 2 F 4 ASN B 113 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 F 4 PHE B 155 THR B 163 -1 O THR B 163 N ASN B 113 SHEET 4 F 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 GLU B 128 ARG B 133 -1 N TRP B 131 O GLU B 138 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 G 4 LEU B 184 ARG B 189 -1 O VAL B 186 N CYS B 173 SHEET 1 H 4 PHE C 109 TYR C 111 0 SHEET 2 H 4 CYS C 114 PHE C 118 -1 O PHE C 116 N PHE C 109 SHEET 3 H 4 LEU C 215 GLN C 219 -1 O SER C 218 N CYS C 115 SHEET 4 H 4 TYR C 140 PHE C 141 -1 N TYR C 140 O VAL C 217 SHEET 1 I 3 LEU C 162 TRP C 163 0 SHEET 2 I 3 THR C 193 VAL C 195 -1 O VAL C 195 N LEU C 162 SHEET 3 I 3 VAL C 203 SER C 204 -1 O VAL C 203 N TYR C 194 SHEET 1 J 2 VAL C 166 ARG C 168 0 SHEET 2 J 2 TRP C 174 SER C 176 -1 O THR C 175 N TYR C 167 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.06 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.06 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.03 SSBOND 4 CYS C 99 CYS C 138 1555 1555 2.05 SSBOND 5 CYS C 102 CYS C 115 1555 1555 2.04 SSBOND 6 CYS C 128 CYS C 214 1555 1555 2.03 SSBOND 7 CYS C 132 CYS C 216 1555 1555 2.04 SSBOND 8 CYS C 192 CYS C 208 1555 1555 2.04 CISPEP 1 ASN A 15 PRO A 16 0 -0.75 CISPEP 2 THR A 113 PRO A 114 0 -1.78 CISPEP 3 TYR B 123 PRO B 124 0 -1.17 CRYST1 170.400 170.400 101.000 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005869 0.003388 0.000000 0.00000 SCALE2 0.000000 0.006776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009901 0.00000