PDB Short entry for 1KKU HEADER TRANSFERASE 10-DEC-01 1KKU TITLE CRYSTAL STRUCTURE OF NUCLEAR HUMAN NICOTINAMIDE MONONUCLEOTIDE TITLE 2 ADENYLYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NMN ADENYLYLTRANSFERASE; COMPND 5 EC: 2.7.7.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS ALPHA/BETA STRUCTURE - ROSSMANN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GARAVAGLIA,I.D'ANGELO,M.EMANUELLI,F.CARNEVALI,F.PIERELLA,G.MAGNI, AUTHOR 2 M.RIZZI REVDAT 4 14-FEB-24 1KKU 1 REMARK REVDAT 3 24-FEB-09 1KKU 1 VERSN REVDAT 2 01-APR-03 1KKU 1 JRNL REVDAT 1 10-JUN-02 1KKU 0 JRNL AUTH S.GARAVAGLIA,I.D'ANGELO,M.EMANUELLI,F.CARNEVALI,F.PIERELLA, JRNL AUTH 2 G.MAGNI,M.RIZZI JRNL TITL STRUCTURE OF HUMAN NMN ADENYLYLTRANSFERASE. A KEY NUCLEAR JRNL TITL 2 ENZYME FOR NAD HOMEOSTASIS. JRNL REF J.BIOL.CHEM. V. 277 8524 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11751893 JRNL DOI 10.1074/JBC.M111589200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000015061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS, ISOPROPANOL, REMARK 280 PH 8.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.85500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.85500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.85500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.85500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 30.85500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.85500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 73.72950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 127.70324 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -73.72950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 127.70324 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 73.72950 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 127.70324 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 30.85500 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 -73.72950 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 127.70324 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 30.85500 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 30.85500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 CYS A 111 REMARK 465 ASP A 112 REMARK 465 HIS A 113 REMARK 465 GLN A 114 REMARK 465 GLN A 115 REMARK 465 ASN A 116 REMARK 465 SER A 117 REMARK 465 PRO A 118 REMARK 465 THR A 119 REMARK 465 LEU A 120 REMARK 465 GLU A 121 REMARK 465 ARG A 122 REMARK 465 PRO A 123 REMARK 465 GLY A 124 REMARK 465 ARG A 125 REMARK 465 LYS A 126 REMARK 465 ARG A 127 REMARK 465 LYS A 128 REMARK 465 TRP A 129 REMARK 465 THR A 130 REMARK 465 GLU A 131 REMARK 465 THR A 132 REMARK 465 GLN A 133 REMARK 465 ASP A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 GLN A 137 REMARK 465 LYS A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 LEU A 141 REMARK 465 GLU A 142 REMARK 465 PRO A 143 REMARK 465 LYS A 144 REMARK 465 THR A 145 REMARK 465 LYS A 146 REMARK 465 ALA A 147 REMARK 465 SER A 258 REMARK 465 GLU A 259 REMARK 465 ASP A 260 REMARK 465 ARG A 261 REMARK 465 ASN A 262 REMARK 465 ALA A 263 REMARK 465 GLY A 264 REMARK 465 VAL A 265 REMARK 465 ILE A 266 REMARK 465 LEU A 267 REMARK 465 ALA A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 ARG A 272 REMARK 465 ASN A 273 REMARK 465 THR A 274 REMARK 465 ALA A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 LYS A 278 REMARK 465 THR A 279 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 110 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 69 SD MET A 69 CE 0.392 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 19 CB - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 173 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 VAL A 178 CB - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 ASN A 191 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 PHE A 196 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 201 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 63 -35.56 -38.55 REMARK 500 SER A 109 49.77 -77.63 REMARK 500 ASP A 158 -52.77 -15.42 REMARK 500 ALA A 189 51.62 -141.21 REMARK 500 ASN A 219 71.81 -153.29 REMARK 500 TYR A 238 8.66 84.43 REMARK 500 SER A 256 -90.99 -58.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 256 GLU A 257 -133.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F9A RELATED DB: PDB REMARK 900 1F9A CONTAINS THE SAME PROTEIN FROM METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: 1EJ2 RELATED DB: PDB REMARK 900 1EJ2 CONTAINS THE SAME PROTEIN FROM METHANOBACTERIUM REMARK 900 THERMOAUTOTROPHICUM DBREF 1KKU A 1 279 UNP Q9HAN9 NMNA1_HUMAN 1 279 SEQRES 1 A 279 MET GLU ASN SER GLU LYS THR GLU VAL VAL LEU LEU ALA SEQRES 2 A 279 CYS GLY SER PHE ASN PRO ILE THR ASN MET HIS LEU ARG SEQRES 3 A 279 LEU PHE GLU LEU ALA LYS ASP TYR MET ASN GLY THR GLY SEQRES 4 A 279 ARG TYR THR VAL VAL LYS GLY ILE ILE SER PRO VAL GLY SEQRES 5 A 279 ASP ALA TYR LYS LYS LYS GLY LEU ILE PRO ALA TYR HIS SEQRES 6 A 279 ARG VAL ILE MET ALA GLU LEU ALA THR LYS ASN SER LYS SEQRES 7 A 279 TRP VAL GLU VAL ASP THR TRP GLU SER LEU GLN LYS GLU SEQRES 8 A 279 TRP LYS GLU THR LEU LYS VAL LEU ARG HIS HIS GLN GLU SEQRES 9 A 279 LYS LEU GLU ALA SER ASP CYS ASP HIS GLN GLN ASN SER SEQRES 10 A 279 PRO THR LEU GLU ARG PRO GLY ARG LYS ARG LYS TRP THR SEQRES 11 A 279 GLU THR GLN ASP SER SER GLN LYS LYS SER LEU GLU PRO SEQRES 12 A 279 LYS THR LYS ALA VAL PRO LYS VAL LYS LEU LEU CYS GLY SEQRES 13 A 279 ALA ASP LEU LEU GLU SER PHE ALA VAL PRO ASN LEU TRP SEQRES 14 A 279 LYS SER GLU ASP ILE THR GLN ILE VAL ALA ASN TYR GLY SEQRES 15 A 279 LEU ILE CYS VAL THR ARG ALA GLY ASN ASP ALA GLN LYS SEQRES 16 A 279 PHE ILE TYR GLU SER ASP VAL LEU TRP LYS HIS ARG SER SEQRES 17 A 279 ASN ILE HIS VAL VAL ASN GLU TRP PHE ALA ASN ASP ILE SEQRES 18 A 279 SER SER THR LYS ILE ARG ARG ALA LEU ARG ARG GLY GLN SEQRES 19 A 279 SER ILE ARG TYR LEU VAL PRO ASP LEU VAL GLN GLU TYR SEQRES 20 A 279 ILE GLU LYS HIS ASN LEU TYR SER SER GLU SER GLU ASP SEQRES 21 A 279 ARG ASN ALA GLY VAL ILE LEU ALA PRO LEU GLN ARG ASN SEQRES 22 A 279 THR ALA GLU ALA LYS THR FORMUL 2 HOH *56(H2 O) HELIX 1 1 THR A 21 THR A 38 1 18 HELIX 2 2 PRO A 62 LYS A 75 1 14 HELIX 3 3 THR A 84 GLN A 89 1 6 HELIX 4 4 GLU A 94 ALA A 108 1 15 HELIX 5 5 GLY A 156 VAL A 165 1 10 HELIX 6 6 LYS A 170 TYR A 181 1 12 HELIX 7 7 ALA A 189 SER A 200 1 12 HELIX 8 8 SER A 200 HIS A 206 1 7 HELIX 9 9 SER A 222 ARG A 232 1 11 HELIX 10 10 PRO A 241 HIS A 251 1 11 SHEET 1 A 6 VAL A 80 VAL A 82 0 SHEET 2 A 6 TYR A 41 PRO A 50 1 N ILE A 48 O GLU A 81 SHEET 3 A 6 THR A 7 GLY A 15 1 N LEU A 11 O ILE A 47 SHEET 4 A 6 LYS A 150 CYS A 155 1 O LYS A 150 N VAL A 10 SHEET 5 A 6 LEU A 183 THR A 187 1 O ILE A 184 N LEU A 153 SHEET 6 A 6 ILE A 210 ASN A 214 1 O VAL A 213 N CYS A 185 CISPEP 1 ASN A 18 PRO A 19 0 -7.58 CRYST1 147.459 147.459 61.710 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006782 0.003915 0.000000 0.00000 SCALE2 0.000000 0.007830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016205 0.00000