PDB Short entry for 1KOT HEADER TRANSPORT PROTEIN 22-DEC-01 1KOT TITLE SOLUTION STRUCTURE OF HUMAN GABA RECEPTOR ASSOCIATED PROTEIN GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GABARAP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GABA-A RECEPTOR-ASSOCIATED PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-GABARAP KEYWDS HUMAN GABA RECEPTOR TARGETING GABARAP, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR T.STANGLER,C.LUGE,L.M.MAYR,D.WILLBOLD REVDAT 3 23-FEB-22 1KOT 1 REMARK SEQADV REVDAT 2 24-FEB-09 1KOT 1 VERSN REVDAT 1 16-JAN-02 1KOT 0 JRNL AUTH T.STANGLER,L.M.MAYR,D.WILLBOLD JRNL TITL SOLUTION STRUCTURE OF HUMAN GABA(A) RECEPTOR-ASSOCIATED JRNL TITL 2 PROTEIN GABARAP: IMPLICATIONS FOR BIOLGOICAL FUNCRION AND JRNL TITL 3 ITS REGULATION. JRNL REF J.BIOL.CHEM. V. 277 13363 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11875056 JRNL DOI 10.1074/JBC.C200050200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 5.3, ARIA 1.0, CNS 1.0 REMARK 3 AUTHORS : VARIAN (VNMR), NILGES (ARIA), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KOT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000015180. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 100MM NACL 100MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM GABARAP U-15N,13C; 25MM REMARK 210 SODIUM OXALATE, PH 6.9 100MM REMARK 210 NACL 100MM KCL 100UM PMSF 0.02% REMARK 210 SODIUM AZIDE 50UM EDTA 5% D2O, REMARK 210 95% H2O; 0.8MM GABARAP U-15N,13C; REMARK 210 25MM SODIUM PHOSPHATE, PH 6.9 REMARK 210 100MM NACL 100MM KCL 100UM PMSF REMARK 210 0.02% SODIUM AZIDE 50UM EDTA 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C_-SEPERATED(AROMATICS)_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.0.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 34 O LEU A 107 1.56 REMARK 500 O VAL A 116 H GLY A 118 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 54.85 -163.76 REMARK 500 1 VAL A 6 -47.57 -134.07 REMARK 500 1 HIS A 11 101.86 -46.79 REMARK 500 1 PRO A 12 170.65 -39.94 REMARK 500 1 ILE A 34 72.13 -115.04 REMARK 500 1 ALA A 38 148.38 -36.62 REMARK 500 1 LYS A 40 -8.04 66.88 REMARK 500 1 ARG A 42 36.72 -91.18 REMARK 500 1 LYS A 49 -55.32 68.43 REMARK 500 1 PRO A 54 -169.48 -55.30 REMARK 500 1 HIS A 71 55.89 82.95 REMARK 500 1 LEU A 78 108.45 -169.64 REMARK 500 1 ASN A 84 4.61 88.88 REMARK 500 1 HIS A 100 9.86 -154.83 REMARK 500 1 GLU A 103 -162.96 57.13 REMARK 500 1 PHE A 105 24.81 47.74 REMARK 500 1 TYR A 117 69.30 -60.47 REMARK 500 2 SER A 2 86.86 -158.55 REMARK 500 2 VAL A 6 -75.31 -142.98 REMARK 500 2 HIS A 11 100.35 -46.55 REMARK 500 2 PRO A 12 172.71 -42.48 REMARK 500 2 ALA A 38 134.56 -30.42 REMARK 500 2 PRO A 39 162.07 -49.85 REMARK 500 2 LYS A 40 -34.10 64.48 REMARK 500 2 ALA A 41 131.70 -35.55 REMARK 500 2 ARG A 42 36.42 -90.82 REMARK 500 2 LYS A 49 -60.57 66.51 REMARK 500 2 PRO A 54 -171.57 -55.33 REMARK 500 2 HIS A 71 51.85 75.59 REMARK 500 2 ARG A 73 43.71 -86.55 REMARK 500 2 ALA A 74 -46.14 75.77 REMARK 500 2 LEU A 78 117.47 -170.39 REMARK 500 2 GLU A 103 -173.74 56.61 REMARK 500 2 PHE A 105 15.20 55.64 REMARK 500 2 TYR A 117 96.32 -44.36 REMARK 500 3 SER A 2 -158.68 -149.14 REMARK 500 3 VAL A 6 -77.41 -124.75 REMARK 500 3 PRO A 12 176.20 -43.59 REMARK 500 3 SER A 18 -73.52 -48.39 REMARK 500 3 ALA A 38 166.55 -39.05 REMARK 500 3 LYS A 40 -0.57 52.26 REMARK 500 3 ARG A 42 36.29 -90.21 REMARK 500 3 PRO A 54 -172.55 -54.17 REMARK 500 3 PHE A 64 -34.49 -39.86 REMARK 500 3 HIS A 71 54.70 80.22 REMARK 500 3 ALA A 74 -67.05 64.98 REMARK 500 3 LEU A 78 107.13 -164.17 REMARK 500 3 ASN A 84 7.66 88.58 REMARK 500 3 HIS A 100 -30.44 -144.36 REMARK 500 3 GLU A 102 63.42 -69.49 REMARK 500 REMARK 500 THIS ENTRY HAS 280 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1KOT A 3 119 UNP O95166 GBRAP_HUMAN 1 117 SEQADV 1KOT GLY A 1 UNP O95166 CLONING ARTIFACT SEQADV 1KOT SER A 2 UNP O95166 CLONING ARTIFACT SEQRES 1 A 119 GLY SER MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE SEQRES 2 A 119 GLU LYS ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS SEQRES 3 A 119 TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO SEQRES 4 A 119 LYS ALA ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU SEQRES 5 A 119 VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU SEQRES 6 A 119 ILE ARG LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU SEQRES 7 A 119 PHE PHE PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA SEQRES 8 A 119 THR MET GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP SEQRES 9 A 119 PHE PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR SEQRES 10 A 119 GLY LEU HELIX 1 1 VAL A 6 HIS A 11 1 6 HELIX 2 2 PRO A 12 TYR A 27 1 16 HELIX 3 3 THR A 58 HIS A 71 1 14 HELIX 4 4 THR A 92 HIS A 101 1 10 SHEET 1 A 3 LYS A 50 PRO A 54 0 SHEET 2 A 3 ARG A 30 ILE A 34 -1 N VAL A 31 O VAL A 53 SHEET 3 A 3 LEU A 107 TYR A 108 1 O LEU A 107 N ILE A 34 SHEET 1 B 2 PHE A 79 PHE A 81 0 SHEET 2 B 2 ALA A 110 SER A 112 -1 O SER A 112 N PHE A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000