PDB Short entry for 1KRM HEADER HYDROLASE 10-JAN-02 1KRM TITLE CRYSTAL STRUCTURE OF BOVINE ADENOSINE DEAMINASE COMPLEXED WITH 6- TITLE 2 HYDROXYL-1,6-DIHYDROPURINE RIBOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.4.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 STRAIN: INTESTINE KEYWDS ADENOSINE DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KINOSHITA REVDAT 6 13-MAR-24 1KRM 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 1KRM 1 REMARK REVDAT 4 24-FEB-09 1KRM 1 VERSN REVDAT 3 13-JUL-04 1KRM 1 REMARK REVDAT 2 08-APR-03 1KRM 1 JRNL REVDAT 1 14-JAN-03 1KRM 0 JRNL AUTH T.KINOSHITA,N.NISHIO,I.NAKANISHI,A.SATO,T.FUJII JRNL TITL STRUCTURE OF BOVINE ADENOSINE DEAMINASE COMPLEXED WITH JRNL TITL 2 6-HYDROXY-1,6-DIHYDROPURINE RIBOSIDE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 299 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12554940 JRNL DOI 10.1107/S090744490202190X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 75.4 REMARK 3 NUMBER OF REFLECTIONS : 11304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 594 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.80 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MONOCHROMATER REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18500 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PEG400, MES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.84000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.01500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.26000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.01500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.42000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.01500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.26000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.01500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.42000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 GLN A 0 REMARK 465 MET A 350 REMARK 465 PRO A 351 REMARK 465 SER A 352 REMARK 465 PRO A 353 REMARK 465 ALA A 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 12 CG HIS A 12 CD2 0.063 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 8 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 LYS A 8 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 TYR A 27 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR A 27 CB - CG - CD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 50 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 TYR A 64 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 CYS A 72 CA - CB - SG ANGL. DEV. = -19.2 DEGREES REMARK 500 CYS A 72 N - CA - C ANGL. DEV. = 24.6 DEGREES REMARK 500 ARG A 78 CD - NE - CZ ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 78 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 120 C - N - CA ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 CYS A 150 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 MET A 152 CG - SD - CE ANGL. DEV. = -12.5 DEGREES REMARK 500 TRP A 158 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 182 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 PHE A 191 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR A 198 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR A 237 CB - CG - CD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 THR A 239 CA - CB - CG2 ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG A 248 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 LYS A 270 C - N - CA ANGL. DEV. = -18.6 DEGREES REMARK 500 LYS A 270 CB - CA - C ANGL. DEV. = 14.7 DEGREES REMARK 500 GLN A 284 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 SER A 330 CB - CA - C ANGL. DEV. = -11.8 DEGREES REMARK 500 ASP A 335 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 TYR A 345 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 348 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 155.90 -20.53 REMARK 500 LEU A 15 -66.41 -29.93 REMARK 500 ASP A 16 -60.09 -8.10 REMARK 500 ILE A 24 -75.41 -42.23 REMARK 500 TYR A 26 -74.46 -41.68 REMARK 500 ARG A 30 -48.63 -153.44 REMARK 500 ILE A 33 82.53 -36.89 REMARK 500 ALA A 34 109.88 -41.32 REMARK 500 ALA A 37 -165.04 -167.50 REMARK 500 ASP A 38 -64.99 -141.68 REMARK 500 LEU A 53 -143.20 -100.09 REMARK 500 PHE A 58 -54.78 -29.45 REMARK 500 PHE A 62 -26.35 -32.58 REMARK 500 MET A 66 -48.71 -23.04 REMARK 500 ALA A 68 -55.97 -19.36 REMARK 500 CYS A 72 96.84 -39.92 REMARK 500 ASP A 74 -60.85 -27.70 REMARK 500 TYR A 81 -75.65 -42.35 REMARK 500 GLU A 85 -71.03 -41.64 REMARK 500 LEU A 104 46.13 -100.91 REMARK 500 ASN A 106 -97.18 128.46 REMARK 500 LYS A 108 -112.38 71.04 REMARK 500 VAL A 109 63.75 37.67 REMARK 500 ILE A 112 104.88 6.77 REMARK 500 TRP A 114 -36.72 98.12 REMARK 500 GLN A 116 -158.71 -135.12 REMARK 500 VAL A 126 -16.11 -49.63 REMARK 500 LEU A 129 -87.60 -50.09 REMARK 500 VAL A 130 -49.24 -29.94 REMARK 500 GLU A 136 -71.38 -43.05 REMARK 500 PHE A 141 -4.33 -140.02 REMARK 500 SER A 160 -52.93 -28.14 REMARK 500 LEU A 165 -74.08 -41.42 REMARK 500 TYR A 169 35.48 -88.23 REMARK 500 GLU A 171 -33.87 82.05 REMARK 500 GLN A 172 40.49 -85.96 REMARK 500 THR A 173 16.63 -163.91 REMARK 500 ALA A 176 149.13 172.15 REMARK 500 ASP A 182 109.70 -59.29 REMARK 500 THR A 184 -4.18 -55.66 REMARK 500 SER A 189 1.29 -68.33 REMARK 500 HIS A 194 -75.41 -53.89 REMARK 500 HIS A 207 135.33 46.84 REMARK 500 HIS A 211 87.88 -67.22 REMARK 500 GLU A 214 -109.69 32.98 REMARK 500 LYS A 229 34.48 83.05 REMARK 500 HIS A 235 -63.73 116.09 REMARK 500 HIS A 238 0.58 -58.38 REMARK 500 ASP A 242 73.59 -69.98 REMARK 500 THR A 243 3.76 -49.35 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 1 PRO A 2 -145.71 REMARK 500 MET A 49 ASP A 50 146.87 REMARK 500 GLY A 71 CYS A 72 61.63 REMARK 500 ASP A 90 GLY A 91 -148.47 REMARK 500 SER A 128 LEU A 129 143.40 REMARK 500 GLN A 172 THR A 173 55.68 REMARK 500 ALA A 199 GLU A 200 144.75 REMARK 500 GLY A 205 VAL A 206 -148.93 REMARK 500 LEU A 289 ASN A 290 -143.48 REMARK 500 TYR A 348 ARG A 349 53.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 26 0.08 SIDE CHAIN REMARK 500 ARG A 30 0.10 SIDE CHAIN REMARK 500 TYR A 64 0.07 SIDE CHAIN REMARK 500 ARG A 78 0.26 SIDE CHAIN REMARK 500 TYR A 81 0.21 SIDE CHAIN REMARK 500 TYR A 99 0.10 SIDE CHAIN REMARK 500 PHE A 141 0.08 SIDE CHAIN REMARK 500 TYR A 169 0.07 SIDE CHAIN REMARK 500 PHE A 191 0.09 SIDE CHAIN REMARK 500 ARG A 232 0.17 SIDE CHAIN REMARK 500 TYR A 287 0.15 SIDE CHAIN REMARK 500 TYR A 345 0.10 SIDE CHAIN REMARK 500 TYR A 348 0.13 SIDE CHAIN REMARK 500 ARG A 349 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 14 NE2 87.2 REMARK 620 3 HIS A 211 NE2 82.3 88.5 REMARK 620 4 ASP A 292 OD1 84.3 95.5 165.8 REMARK 620 5 PRH A 401 O6 105.2 167.4 95.0 84.1 REMARK 620 6 PRH A 401 N7 156.8 83.3 118.5 75.6 84.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRH A 401 DBREF 1KRM A -1 354 UNP P56658 ADA_BOVIN 1 356 SEQADV 1KRM LEU A 44 UNP P56658 GLN 46 CONFLICT SEQRES 1 A 356 ALA GLN THR PRO ALA PHE ASP LYS PRO LYS VAL GLU LEU SEQRES 2 A 356 HIS VAL HIS LEU ASP GLY ALA ILE LYS PRO GLU THR ILE SEQRES 3 A 356 LEU TYR TYR GLY LYS ARG ARG GLY ILE ALA LEU PRO ALA SEQRES 4 A 356 ASP THR PRO GLU GLU LEU LEU ASN ILE ILE GLY MET ASP SEQRES 5 A 356 LYS PRO LEU THR LEU PRO ASP PHE LEU ALA LYS PHE ASP SEQRES 6 A 356 TYR TYR MET PRO ALA ILE ALA GLY CYS ARG ASP ALA ILE SEQRES 7 A 356 LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA LYS SEQRES 8 A 356 ASP GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO HIS SEQRES 9 A 356 LEU LEU ALA ASN SER LYS VAL GLU PRO ILE PRO TRP ASN SEQRES 10 A 356 GLN ALA GLU GLY ASP LEU THR PRO ASP GLU VAL VAL SER SEQRES 11 A 356 LEU VAL ASN GLN GLY LEU GLN GLU GLY GLU ARG ASP PHE SEQRES 12 A 356 GLY VAL LYS VAL ARG SER ILE LEU CYS CYS MET ARG HIS SEQRES 13 A 356 GLN PRO SER TRP SER SER GLU VAL VAL GLU LEU CYS LYS SEQRES 14 A 356 LYS TYR ARG GLU GLN THR VAL VAL ALA ILE ASP LEU ALA SEQRES 15 A 356 GLY ASP GLU THR ILE GLU GLY SER SER LEU PHE PRO GLY SEQRES 16 A 356 HIS VAL GLN ALA TYR ALA GLU ALA VAL LYS SER GLY VAL SEQRES 17 A 356 HIS ARG THR VAL HIS ALA GLY GLU VAL GLY SER ALA ASN SEQRES 18 A 356 VAL VAL LYS GLU ALA VAL ASP THR LEU LYS THR GLU ARG SEQRES 19 A 356 LEU GLY HIS GLY TYR HIS THR LEU GLU ASP THR THR LEU SEQRES 20 A 356 TYR ASN ARG LEU ARG GLN GLU ASN MET HIS PHE GLU ILE SEQRES 21 A 356 CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP LYS PRO SEQRES 22 A 356 ASP THR GLU HIS ALA VAL ILE ARG PHE LYS ASN ASP GLN SEQRES 23 A 356 VAL ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE PHE SEQRES 24 A 356 LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS LYS SEQRES 25 A 356 ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU ASN SEQRES 26 A 356 ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU ASP GLU SEQRES 27 A 356 LYS LYS GLU LEU LEU ASP LEU LEU TYR LYS ALA TYR ARG SEQRES 28 A 356 MET PRO SER PRO ALA HET ZN A 501 1 HET PRH A 401 19 HETNAM ZN ZINC ION HETNAM PRH 6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE FORMUL 2 ZN ZN 2+ FORMUL 3 PRH C10 H15 N4 O5 1+ FORMUL 4 HOH *490(H2 O) HELIX 1 1 ASP A 16 ALA A 18 5 3 HELIX 2 2 LYS A 20 LYS A 29 1 10 HELIX 3 3 THR A 39 GLY A 48 1 10 HELIX 4 4 THR A 54 PHE A 62 1 9 HELIX 5 5 TYR A 65 ALA A 70 1 6 HELIX 6 6 CYS A 72 ASP A 90 1 19 HELIX 7 7 SER A 100 LEU A 104 5 5 HELIX 8 8 THR A 122 ASP A 140 1 19 HELIX 9 9 GLN A 155 TYR A 169 1 15 HELIX 10 10 GLY A 187 LEU A 190 5 4 HELIX 11 11 PHE A 191 SER A 204 1 14 HELIX 12 12 SER A 217 THR A 227 1 11 HELIX 13 13 GLY A 236 GLU A 241 5 6 HELIX 14 14 THR A 244 ASN A 253 1 10 HELIX 15 15 CYS A 259 GLY A 267 1 9 HELIX 16 16 HIS A 275 ASP A 283 1 9 HELIX 17 17 THR A 300 ASP A 311 1 12 HELIX 18 18 THR A 315 SER A 330 1 16 HELIX 19 19 PRO A 333 LYS A 346 1 14 SHEET 1 A 7 VAL A 9 HIS A 14 0 SHEET 2 A 7 TYR A 94 TYR A 99 1 O ARG A 98 N VAL A 13 SHEET 3 A 7 LYS A 144 MET A 152 1 O CYS A 150 N TYR A 99 SHEET 4 A 7 VAL A 174 ALA A 180 1 O VAL A 175 N SER A 147 SHEET 5 A 7 ARG A 208 VAL A 210 1 O THR A 209 N ILE A 177 SHEET 6 A 7 ARG A 232 LEU A 233 1 O ARG A 232 N VAL A 210 SHEET 7 A 7 HIS A 255 PHE A 256 1 O HIS A 255 N LEU A 233 LINK NE2 HIS A 12 ZN ZN A 501 1555 1555 2.04 LINK NE2 HIS A 14 ZN ZN A 501 1555 1555 2.13 LINK NE2 HIS A 211 ZN ZN A 501 1555 1555 2.20 LINK OD1 ASP A 292 ZN ZN A 501 1555 1555 2.23 LINK O6 PRH A 401 ZN ZN A 501 1555 1555 1.86 LINK N7 PRH A 401 ZN ZN A 501 1555 1555 2.31 CISPEP 1 PRO A 2 ALA A 3 0 -19.70 CISPEP 2 ALA A 105 ASN A 106 0 -25.54 CISPEP 3 TRP A 114 ASN A 115 0 3.46 CISPEP 4 GLU A 118 GLY A 119 0 -8.64 SITE 1 AC1 5 HIS A 12 HIS A 14 HIS A 211 ASP A 292 SITE 2 AC1 5 PRH A 401 SITE 1 AC2 14 HIS A 12 HIS A 14 ASP A 16 LEU A 59 SITE 2 AC2 14 LEU A 103 MET A 152 GLY A 181 HIS A 211 SITE 3 AC2 14 GLU A 214 HIS A 235 ASP A 292 ASP A 293 SITE 4 AC2 14 ZN A 501 HOH A 985 CRYST1 80.030 80.030 141.680 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007058 0.00000