PDB Short entry for 1KSF HEADER HYDROLASE, LIGAND BINDING PROTEIN 12-JAN-02 1KSF TITLE CRYSTAL STRUCTURE OF CLPA, AN HSP100 CHAPERONE AND REGULATOR OF CLPAP TITLE 2 PROTEASE: STRUCTURAL BASIS OF DIFFERENCES IN FUNCTION OF THE TWO AAA+ TITLE 3 ATPASE DOMAINS CAVEAT 1KSF INCORRECT CHIRALITY OF 3 CA CARBONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: ENDOPEPTIDASE CLP ATP-BINDING; ATP-BINDING COMPONENT OF COMPND 5 SERINE PROTEASE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLPA, AAA+, ATPASES, ATP-DEPENDENT PROTEASE, CHAPERONES, HYDROLASE, KEYWDS 2 LIGAND BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GUO,M.R.MAURIZI,L.ESSER,D.XIA REVDAT 5 14-FEB-24 1KSF 1 REMARK REVDAT 4 27-OCT-21 1KSF 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1KSF 1 VERSN REVDAT 2 05-APR-05 1KSF 1 JRNL REMARK REVDAT 1 27-SEP-02 1KSF 0 JRNL AUTH F.GUO,M.R.MAURIZI,L.ESSER,D.XIA JRNL TITL CRYSTAL STRUCTURE OF CLPA, AN HSP100 CHAPERONE AND REGULATOR JRNL TITL 2 OF CLPAP PROTEASE JRNL REF J.BIOL.CHEM. V. 277 46743 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12205096 JRNL DOI 10.1074/JBC.M207796200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : -1.15000 REMARK 3 B33 (A**2) : 1.73000 REMARK 3 B12 (A**2) : -0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5762 ; 0.019 ; 0.000 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7773 ; 1.379 ; 1.900 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3556 ; 1.682 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5720 ; 3.946 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2206 ; 6.604 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2053 ; 8.788 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; APS REMARK 200 BEAMLINE : X9B; 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.000; 1.000 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISO-PROPANOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP AT 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.69467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.34733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.52100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.17367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.86833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG X 143 REMARK 465 LYS X 144 REMARK 465 ASP X 145 REMARK 465 GLU X 146 REMARK 465 PRO X 147 REMARK 465 THR X 148 REMARK 465 GLN X 149 REMARK 465 SER X 150 REMARK 465 SER X 151 REMARK 465 ASP X 152 REMARK 465 PRO X 153 REMARK 465 GLY X 154 REMARK 465 SER X 155 REMARK 465 GLN X 156 REMARK 465 PRO X 157 REMARK 465 ASN X 158 REMARK 465 SER X 159 REMARK 465 GLU X 160 REMARK 465 GLU X 161 REMARK 465 GLN X 162 REMARK 465 ALA X 163 REMARK 465 GLY X 164 REMARK 465 GLY X 165 REMARK 465 GLU X 166 REMARK 465 GLU X 167 REMARK 465 SER X 252 REMARK 465 LEU X 253 REMARK 465 LEU X 254 REMARK 465 GLU X 611 REMARK 465 THR X 612 REMARK 465 GLU X 613 REMARK 465 ARG X 614 REMARK 465 LYS X 615 REMARK 465 SER X 616 REMARK 465 ILE X 617 REMARK 465 GLY X 618 REMARK 465 LEU X 619 REMARK 465 ILE X 620 REMARK 465 HIS X 621 REMARK 465 GLN X 622 REMARK 465 ASP X 623 REMARK 465 ALA X 756 REMARK 465 ALA X 757 REMARK 465 HIS X 758 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN X 300 CG CD OE1 NE2 REMARK 470 ASN X 624 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU X 74 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP X 133 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU X 394 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER X 48 62.63 62.28 REMARK 500 ALA X 71 -98.02 -125.88 REMARK 500 GLU X 73 -56.18 29.97 REMARK 500 GLU X 74 88.07 -60.90 REMARK 500 GLU X 75 9.37 34.86 REMARK 500 GLU X 170 -119.44 -69.84 REMARK 500 PHE X 172 -98.59 -167.85 REMARK 500 THR X 173 47.83 -145.63 REMARK 500 ASN X 175 76.84 45.61 REMARK 500 VAL X 182 -103.63 -91.74 REMARK 500 ASP X 235 54.27 -104.26 REMARK 500 VAL X 236 38.91 -176.03 REMARK 500 PRO X 237 -173.17 -49.96 REMARK 500 GLU X 238 -63.44 46.58 REMARK 500 ILE X 250 -79.12 -145.87 REMARK 500 LYS X 258 88.95 -163.17 REMARK 500 TYR X 259 -60.41 -107.09 REMARK 500 ASP X 262 89.56 58.94 REMARK 500 ASP X 277 82.48 91.71 REMARK 500 ASN X 279 71.04 -102.25 REMARK 500 GLN X 300 -107.42 5.87 REMARK 500 PRO X 309 -95.47 -102.19 REMARK 500 SER X 312 -166.13 -164.56 REMARK 500 SER X 313 60.08 -100.95 REMARK 500 ARG X 335 105.14 60.75 REMARK 500 LEU X 337 -10.28 -166.54 REMARK 500 ALA X 338 -46.71 -25.95 REMARK 500 ILE X 389 70.27 -104.85 REMARK 500 LEU X 394 -102.17 11.00 REMARK 500 PRO X 413 -60.03 6.48 REMARK 500 VAL X 414 -86.15 -73.05 REMARK 500 SER X 415 78.57 149.38 REMARK 500 LYS X 416 83.62 -58.17 REMARK 500 ARG X 417 -59.48 16.50 REMARK 500 LYS X 418 92.63 82.06 REMARK 500 LYS X 419 -114.00 -65.47 REMARK 500 THR X 420 74.26 -119.81 REMARK 500 VAL X 421 117.45 169.84 REMARK 500 ASN X 422 -5.56 -152.84 REMARK 500 ARG X 435 -145.86 -156.17 REMARK 500 ILE X 436 -54.02 95.08 REMARK 500 PRO X 437 106.82 -42.01 REMARK 500 GLU X 438 124.21 175.75 REMARK 500 SER X 440 77.20 -167.57 REMARK 500 VAL X 441 -109.42 -130.75 REMARK 500 GLN X 443 -96.80 -149.57 REMARK 500 LEU X 459 -30.13 -142.23 REMARK 500 ARG X 527 25.11 -152.21 REMARK 500 VAL X 530 -60.22 -147.04 REMARK 500 ARG X 532 -81.14 -76.58 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MET X 784 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 783 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 520 OD2 REMARK 620 2 ASP X 520 OD1 50.0 REMARK 620 3 SER X 522 OG 88.7 56.3 REMARK 620 4 GLU X 565 OE1 154.9 117.5 100.9 REMARK 620 5 GLU X 639 OE2 81.0 119.8 96.8 120.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 782 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 783 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE X 785 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE X 786 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP X 780 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP X 781 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 791 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 792 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 794 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 795 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 796 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K6K RELATED DB: PDB DBREF 1KSF X 1 758 UNP P0ABH9 CLPA_ECOLI 1 758 SEQADV 1KSF LEU X 169 UNP P0ABH9 MET 169 ENGINEERED MUTATION SEQRES 1 X 758 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 X 758 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 X 758 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 X 758 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 X 758 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 X 758 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 X 758 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 X 758 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 X 758 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 X 758 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 X 758 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR ARG SEQRES 12 X 758 LYS ASP GLU PRO THR GLN SER SER ASP PRO GLY SER GLN SEQRES 13 X 758 PRO ASN SER GLU GLU GLN ALA GLY GLY GLU GLU ARG LEU SEQRES 14 X 758 GLU ASN PHE THR THR ASN LEU ASN GLN LEU ALA ARG VAL SEQRES 15 X 758 GLY GLY ILE ASP PRO LEU ILE GLY ARG GLU LYS GLU LEU SEQRES 16 X 758 GLU ARG ALA ILE GLN VAL LEU CYS ARG ARG ARG LYS ASN SEQRES 17 X 758 ASN PRO LEU LEU VAL GLY GLU SER GLY VAL GLY LYS THR SEQRES 18 X 758 ALA ILE ALA GLU GLY LEU ALA TRP ARG ILE VAL GLN GLY SEQRES 19 X 758 ASP VAL PRO GLU VAL MET ALA ASP CYS THR ILE TYR SER SEQRES 20 X 758 LEU ASP ILE GLY SER LEU LEU ALA GLY THR LYS TYR ARG SEQRES 21 X 758 GLY ASP PHE GLU LYS ARG PHE LYS ALA LEU LEU LYS GLN SEQRES 22 X 758 LEU GLU GLN ASP THR ASN SER ILE LEU PHE ILE ASP GLU SEQRES 23 X 758 ILE HIS THR ILE ILE GLY ALA GLY ALA ALA SER GLY GLY SEQRES 24 X 758 GLN VAL ASP ALA ALA ASN LEU ILE LYS PRO LEU LEU SER SEQRES 25 X 758 SER GLY LYS ILE ARG VAL ILE GLY SER THR THR TYR GLN SEQRES 26 X 758 GLU PHE SER ASN ILE PHE GLU LYS ASP ARG ALA LEU ALA SEQRES 27 X 758 ARG ARG PHE GLN LYS ILE ASP ILE THR GLU PRO SER ILE SEQRES 28 X 758 GLU GLU THR VAL GLN ILE ILE ASN GLY LEU LYS PRO LYS SEQRES 29 X 758 TYR GLU ALA HIS HIS ASP VAL ARG TYR THR ALA LYS ALA SEQRES 30 X 758 VAL ARG ALA ALA VAL GLU LEU ALA VAL LYS TYR ILE ASN SEQRES 31 X 758 ASP ARG HIS LEU PRO ASP LYS ALA ILE ASP VAL ILE ASP SEQRES 32 X 758 GLU ALA GLY ALA ARG ALA ARG LEU MET PRO VAL SER LYS SEQRES 33 X 758 ARG LYS LYS THR VAL ASN VAL ALA ASP ILE GLU SER VAL SEQRES 34 X 758 VAL ALA ARG ILE ALA ARG ILE PRO GLU LYS SER VAL SER SEQRES 35 X 758 GLN SER ASP ARG ASP THR LEU LYS ASN LEU GLY ASP ARG SEQRES 36 X 758 LEU LYS MET LEU VAL PHE GLY GLN ASP LYS ALA ILE GLU SEQRES 37 X 758 ALA LEU THR GLU ALA ILE LYS MET ALA ARG ALA GLY LEU SEQRES 38 X 758 GLY HIS GLU HIS LYS PRO VAL GLY SER PHE LEU PHE ALA SEQRES 39 X 758 GLY PRO THR GLY VAL GLY LYS THR GLU VAL THR VAL GLN SEQRES 40 X 758 LEU SER LYS ALA LEU GLY ILE GLU LEU LEU ARG PHE ASP SEQRES 41 X 758 MET SER GLU TYR MET GLU ARG HIS THR VAL SER ARG LEU SEQRES 42 X 758 ILE GLY ALA PRO PRO GLY TYR VAL GLY PHE ASP GLN GLY SEQRES 43 X 758 GLY LEU LEU THR ASP ALA VAL ILE LYS HIS PRO HIS ALA SEQRES 44 X 758 VAL LEU LEU LEU ASP GLU ILE GLU LYS ALA HIS PRO ASP SEQRES 45 X 758 VAL PHE ASN ILE LEU LEU GLN VAL MET ASP ASN GLY THR SEQRES 46 X 758 LEU THR ASP ASN ASN GLY ARG LYS ALA ASP PHE ARG ASN SEQRES 47 X 758 VAL VAL LEU VAL MET THR THR ASN ALA GLY VAL ARG GLU SEQRES 48 X 758 THR GLU ARG LYS SER ILE GLY LEU ILE HIS GLN ASP ASN SEQRES 49 X 758 SER THR ASP ALA MET GLU GLU ILE LYS LYS ILE PHE THR SEQRES 50 X 758 PRO GLU PHE ARG ASN ARG LEU ASP ASN ILE ILE TRP PHE SEQRES 51 X 758 ASP HIS LEU SER THR ASP VAL ILE HIS GLN VAL VAL ASP SEQRES 52 X 758 LYS PHE ILE VAL GLU LEU GLN VAL GLN LEU ASP GLN LYS SEQRES 53 X 758 GLY VAL SER LEU GLU VAL SER GLN GLU ALA ARG ASN TRP SEQRES 54 X 758 LEU ALA GLU LYS GLY TYR ASP ARG ALA MET GLY ALA ARG SEQRES 55 X 758 PRO MET ALA ARG VAL ILE GLN ASP ASN LEU LYS LYS PRO SEQRES 56 X 758 LEU ALA ASN GLU LEU LEU PHE GLY SER LEU VAL ASP GLY SEQRES 57 X 758 GLY GLN VAL THR VAL ALA LEU ASP LYS GLU LYS ASN GLU SEQRES 58 X 758 LEU THR TYR GLY PHE GLN SER ALA GLN LYS HIS LYS ALA SEQRES 59 X 758 GLU ALA ALA HIS HET MG X 782 1 HET MG X 783 1 HET MET X 784 8 HET PGE X 785 10 HET PGE X 786 10 HET ADP X 780 27 HET ADP X 781 27 HET IPA X 791 4 HET IPA X 792 4 HET IPA X 794 4 HET IPA X 795 4 HET IPA X 796 4 HETNAM MG MAGNESIUM ION HETNAM MET METHIONINE HETNAM PGE TRIETHYLENE GLYCOL HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 MG 2(MG 2+) FORMUL 4 MET C5 H11 N O2 S FORMUL 5 PGE 2(C6 H14 O4) FORMUL 7 ADP 2(C10 H15 N5 O10 P2) FORMUL 9 IPA 5(C3 H8 O) FORMUL 14 HOH *242(H2 O) HELIX 1 1 ASN X 3 ARG X 18 1 16 HELIX 2 2 THR X 26 LEU X 35 1 10 HELIX 3 3 ASN X 37 CYS X 47 1 11 HELIX 4 4 ASP X 50 THR X 66 1 17 HELIX 5 5 THR X 81 GLY X 99 1 19 HELIX 6 6 THR X 104 SER X 114 1 11 HELIX 7 7 SER X 118 HIS X 127 1 10 HELIX 8 8 SER X 130 HIS X 140 1 11 HELIX 9 9 ASN X 175 VAL X 182 1 8 HELIX 10 10 ARG X 191 CYS X 203 1 13 HELIX 11 11 GLY X 219 GLN X 233 1 15 HELIX 12 12 ASP X 262 LEU X 274 1 13 HELIX 13 13 GLY X 299 ASN X 305 1 7 HELIX 14 14 THR X 323 ASN X 329 1 7 HELIX 15 15 LEU X 337 ARG X 339 5 3 HELIX 16 16 SER X 350 ASP X 370 1 21 HELIX 17 17 THR X 374 ILE X 389 1 16 HELIX 18 18 HIS X 393 LEU X 411 1 19 HELIX 19 19 ASN X 422 ARG X 435 1 14 HELIX 20 20 GLN X 443 LYS X 457 1 15 HELIX 21 21 GLN X 463 ALA X 479 1 17 HELIX 22 22 GLY X 500 GLY X 513 1 14 HELIX 23 23 SER X 522 TYR X 524 5 3 HELIX 24 24 TYR X 540 GLN X 545 1 6 HELIX 25 25 GLY X 547 HIS X 556 1 10 HELIX 26 26 GLU X 565 ALA X 569 5 5 HELIX 27 27 HIS X 570 GLY X 584 1 15 HELIX 28 28 MET X 629 PHE X 636 1 8 HELIX 29 29 THR X 637 ASN X 642 1 6 HELIX 30 30 SER X 654 LYS X 676 1 23 HELIX 31 31 SER X 683 GLY X 694 1 12 HELIX 32 32 PRO X 703 LYS X 713 1 11 HELIX 33 33 LEU X 716 GLY X 723 1 8 SHEET 1 A 2 PHE X 24 MET X 25 0 SHEET 2 A 2 GLN X 79 PRO X 80 1 O GLN X 79 N MET X 25 SHEET 1 B 5 THR X 244 SER X 247 0 SHEET 2 B 5 SER X 280 ILE X 284 1 O ILE X 281 N THR X 244 SHEET 3 B 5 ARG X 317 THR X 322 1 O ILE X 319 N ILE X 284 SHEET 4 B 5 ASN X 209 VAL X 213 1 N LEU X 212 O GLY X 320 SHEET 5 B 5 PHE X 341 ASP X 345 1 O GLN X 342 N ASN X 209 SHEET 1 C 5 GLU X 515 ASP X 520 0 SHEET 2 C 5 ALA X 559 ASP X 564 1 O LEU X 562 N LEU X 517 SHEET 3 C 5 VAL X 599 THR X 605 1 O VAL X 602 N LEU X 561 SHEET 4 C 5 GLY X 489 ALA X 494 1 N PHE X 493 O MET X 603 SHEET 5 C 5 ASN X 646 TRP X 649 1 O ILE X 648 N ALA X 494 SHEET 1 D 2 THR X 585 LEU X 586 0 SHEET 2 D 2 ALA X 594 ASP X 595 -1 O ALA X 594 N LEU X 586 SHEET 1 E 3 VAL X 678 VAL X 682 0 SHEET 2 E 3 GLY X 729 ASP X 736 1 O VAL X 731 N SER X 679 SHEET 3 E 3 GLU X 741 SER X 748 -1 O THR X 743 N ALA X 734 LINK OD2 ASP X 520 MG MG X 783 1555 1555 2.50 LINK OD1 ASP X 520 MG MG X 783 1555 1555 2.49 LINK OG SER X 522 MG MG X 783 1555 1555 2.38 LINK OE1 GLU X 565 MG MG X 783 1555 1555 2.17 LINK OE2 GLU X 639 MG MG X 783 6544 1555 2.13 SITE 1 AC1 2 LYS X 501 ADP X 781 SITE 1 AC2 4 ASP X 520 SER X 522 GLU X 565 GLU X 639 SITE 1 AC3 8 ARG X 90 HIS X 94 ASN X 107 VAL X 110 SITE 2 AC3 8 ALA X 111 ILE X 138 ASP X 674 HOH X 908 SITE 1 AC4 5 LYS X 387 TYR X 388 ALA X 434 ARG X 435 SITE 2 AC4 5 GLU X 484 SITE 1 AC5 14 PRO X 187 LEU X 188 ILE X 189 ARG X 206 SITE 2 AC5 14 GLU X 215 GLY X 217 GLY X 219 LYS X 220 SITE 3 AC5 14 THR X 221 ALA X 222 ARG X 339 ASP X 396 SITE 4 AC5 14 ILE X 399 HOH X 901 SITE 1 AC6 18 LEU X 459 VAL X 460 PHE X 461 GLN X 463 SITE 2 AC6 18 GLY X 498 VAL X 499 GLY X 500 LYS X 501 SITE 3 AC6 18 THR X 502 GLU X 503 LEU X 653 VAL X 661 SITE 4 AC6 18 PHE X 665 ALA X 701 MG X 782 HOH X 977 SITE 5 AC6 18 HOH X 982 HOH X1073 SITE 1 AC7 2 GLU X 523 THR X 637 SITE 1 AC8 3 GLN X 89 PHE X 93 ASP X 663 SITE 1 AC9 4 SER X 97 ARG X 435 GLN X 672 GLN X 675 SITE 1 BC1 3 GLU X 102 GLU X 427 HOH X 968 SITE 1 BC2 3 PRO X 349 LEU X 394 HOH X 891 CRYST1 124.107 124.107 97.042 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008058 0.004652 0.000000 0.00000 SCALE2 0.000000 0.009304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010305 0.00000