PDB Short entry for 1KZY HEADER DNA BINDING PROTEIN, PROTEIN BINDING 08-FEB-02 1KZY TITLE CRYSTAL STRUCTURE OF THE 53BP1 BRCT REGION COMPLEXED TO TITLE 2 TUMOR SUPPRESSOR P53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING CORE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR SUPPRESSOR P53-BINDING PROTEIN 1; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: TANDEM-BRCT DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: 53BP1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS TANDEM-BRCT AND LINKER COMPLEXED WITH NON-BRCT PROTEIN, KEYWDS 2 THREE-HELIX BUNDLE, PARALLEL BETA SHEET, DNA BINDING KEYWDS 3 PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.S.JOO,P.D.JEFFREY,S.B.CANTOR,M.S.FINNIN,D.M.LIVINGSTON, AUTHOR 2 N.P.PAVLETICH REVDAT 2 24-FEB-09 1KZY 1 VERSN REVDAT 1 20-MAR-02 1KZY 0 JRNL AUTH W.S.JOO,P.D.JEFFREY,S.B.CANTOR,M.S.FINNIN, JRNL AUTH 2 D.M.LIVINGSTON,N.P.PAVLETICH JRNL TITL STRUCTURE OF THE 53BP1 BRCT REGION BOUND TO P53 JRNL TITL 2 AND ITS COMPARISON TO THE BRCA1 BRCT STRUCTURE. JRNL REF GENES DEV. V. 16 583 2002 JRNL REFN ISSN 0890-9369 JRNL PMID 11877378 JRNL DOI 10.1101/GAD.959202 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1469 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KZY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-02. REMARK 100 THE RCSB ID CODE IS RCSB015520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2832,1.2817,1.2622 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30624 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 16.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, AMMONIUM REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.56600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.48800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.56600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.48800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT IS TENTATIVELY DEFINED AS A HETERODIMER. REMARK 300 HOWEVER, THE FUNCTIONAL BIOLOGICAL UNIT REMAINS TO BE REMARK 300 DETERMINED. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 1741 REMARK 465 SER C 1742 REMARK 465 ASP C 1743 REMARK 465 LYS C 1744 REMARK 465 LEU C 1745 REMARK 465 ALA C 1746 REMARK 465 SER C 1747 REMARK 465 ARG C 1748 REMARK 465 SER C 1749 REMARK 465 LYS C 1750 REMARK 465 LEU C 1751 REMARK 465 PRO C 1752 REMARK 465 ASP C 1753 REMARK 465 GLY C 1754 REMARK 465 PRO C 1755 REMARK 465 THR C 1756 REMARK 465 GLY C 1757 REMARK 465 SER C 1758 REMARK 465 SER C 1759 REMARK 465 GLU C 1760 REMARK 465 GLU C 1761 REMARK 465 GLU C 1762 REMARK 465 GLU C 1763 REMARK 465 GLU C 1764 REMARK 465 PHE C 1765 REMARK 465 LEU C 1766 REMARK 465 GLU C 1767 REMARK 465 THR D 1741 REMARK 465 SER D 1742 REMARK 465 ASP D 1743 REMARK 465 LYS D 1744 REMARK 465 LEU D 1745 REMARK 465 ALA D 1746 REMARK 465 SER D 1747 REMARK 465 ARG D 1748 REMARK 465 SER D 1749 REMARK 465 LYS D 1750 REMARK 465 LEU D 1751 REMARK 465 PRO D 1752 REMARK 465 ASP D 1753 REMARK 465 GLY D 1754 REMARK 465 PRO D 1755 REMARK 465 THR D 1756 REMARK 465 GLY D 1757 REMARK 465 SER D 1758 REMARK 465 SER D 1759 REMARK 465 GLU D 1760 REMARK 465 GLU D 1761 REMARK 465 GLU D 1762 REMARK 465 GLU D 1763 REMARK 465 GLU D 1764 REMARK 465 PHE D 1765 REMARK 465 LEU D 1766 REMARK 465 GLU D 1767 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA C 1794 O HOH C 207 2.14 REMARK 500 NE ARG B 202 O HOH B 337 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 188 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 116 2.95 -157.00 REMARK 500 THR A 118 34.55 -141.11 REMARK 500 ALA A 138 6.73 56.79 REMARK 500 SER A 183 2.76 -62.27 REMARK 500 ASP A 186 26.23 -77.19 REMARK 500 ASP A 208 104.47 11.11 REMARK 500 PHE A 212 9.95 84.61 REMARK 500 CYS A 242 106.70 -42.74 REMARK 500 ARG A 248 -14.98 83.37 REMARK 500 CYS A 277 78.93 -117.75 REMARK 500 ASN A 288 1.80 -54.24 REMARK 500 SER B 116 35.72 -153.04 REMARK 500 THR B 118 31.33 -141.67 REMARK 500 CYS B 124 117.14 -164.10 REMARK 500 ALA B 138 5.62 50.92 REMARK 500 ASP B 184 5.24 -60.07 REMARK 500 SER B 185 97.64 -66.28 REMARK 500 ASP B 186 30.71 -67.68 REMARK 500 ASP B 208 112.15 18.30 REMARK 500 PHE B 212 0.90 84.18 REMARK 500 PRO B 223 172.01 -58.48 REMARK 500 ARG B 248 -9.61 72.50 REMARK 500 ASN B 288 0.05 -66.97 REMARK 500 ALA C1739 -165.06 -78.18 REMARK 500 ARG C1858 165.83 175.40 REMARK 500 GLN C1881 -74.06 -61.23 REMARK 500 ASN C1883 -35.81 95.76 REMARK 500 PHE C1884 -79.08 -127.06 REMARK 500 SER C1905 -92.41 -32.52 REMARK 500 ALA C1907 55.48 -62.56 REMARK 500 LYS C1910 67.06 -51.17 REMARK 500 ASP C1911 52.66 -110.43 REMARK 500 LYS C1964 -9.73 -56.52 REMARK 500 SER C1971 -96.30 -20.34 REMARK 500 ARG D1719 -53.81 -29.76 REMARK 500 LEU D1724 -75.50 63.89 REMARK 500 PRO D1769 104.61 -51.52 REMARK 500 PRO D1770 129.32 -25.21 REMARK 500 GLN D1870 123.20 -38.84 REMARK 500 ASN D1871 18.67 52.66 REMARK 500 ASN D1883 -25.82 96.22 REMARK 500 PHE D1884 -74.91 -135.90 REMARK 500 SER D1905 -93.17 -29.96 REMARK 500 ALA D1907 65.65 -59.15 REMARK 500 HIS D1908 130.34 -176.82 REMARK 500 LYS D1910 68.30 -63.05 REMARK 500 ASP D1911 52.44 -110.76 REMARK 500 LYS D1964 -6.42 -56.54 REMARK 500 SER D1971 -98.90 -4.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 107 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 102.4 REMARK 620 3 CYS A 238 SG 115.2 101.9 REMARK 620 4 CYS A 242 SG 114.9 101.6 117.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 103.4 REMARK 620 3 CYS B 238 SG 113.4 108.7 REMARK 620 4 CYS B 242 SG 115.8 98.8 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 DBREF 1KZY A 95 289 UNP P04637 P53_HUMAN 95 289 DBREF 1KZY B 95 289 UNP P04637 P53_HUMAN 95 289 DBREF 1KZY C 1714 1972 UNP Q12888 TP53B_HUMAN 1714 1972 DBREF 1KZY D 1714 1972 UNP Q12888 TP53B_HUMAN 1714 1972 SEQRES 1 A 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 A 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 A 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 A 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 A 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA SEQRES 6 A 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 A 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 A 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 A 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 A 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 A 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 A 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 A 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 A 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 A 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 B 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 B 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 B 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 B 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 B 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA SEQRES 6 B 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 B 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 B 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 B 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 B 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 B 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 B 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 B 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 B 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 B 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 C 259 ALA LEU GLU GLU GLN ARG GLY PRO LEU PRO LEU ASN LYS SEQRES 2 C 259 THR LEU PHE LEU GLY TYR ALA PHE LEU LEU THR MET ALA SEQRES 3 C 259 THR THR SER ASP LYS LEU ALA SER ARG SER LYS LEU PRO SEQRES 4 C 259 ASP GLY PRO THR GLY SER SER GLU GLU GLU GLU GLU PHE SEQRES 5 C 259 LEU GLU ILE PRO PRO PHE ASN LYS GLN TYR THR GLU SER SEQRES 6 C 259 GLN LEU ARG ALA GLY ALA GLY TYR ILE LEU GLU ASP PHE SEQRES 7 C 259 ASN GLU ALA GLN CYS ASN THR ALA TYR GLN CYS LEU LEU SEQRES 8 C 259 ILE ALA ASP GLN HIS CYS ARG THR ARG LYS TYR PHE LEU SEQRES 9 C 259 CYS LEU ALA SER GLY ILE PRO CYS VAL SER HIS VAL TRP SEQRES 10 C 259 VAL HIS ASP SER CYS HIS ALA ASN GLN LEU GLN ASN TYR SEQRES 11 C 259 ARG ASN TYR LEU LEU PRO ALA GLY TYR SER LEU GLU GLU SEQRES 12 C 259 GLN ARG ILE LEU ASP TRP GLN PRO ARG GLU ASN PRO PHE SEQRES 13 C 259 GLN ASN LEU LYS VAL LEU LEU VAL SER ASP GLN GLN GLN SEQRES 14 C 259 ASN PHE LEU GLU LEU TRP SER GLU ILE LEU MET THR GLY SEQRES 15 C 259 GLY ALA ALA SER VAL LYS GLN HIS HIS SER SER ALA HIS SEQRES 16 C 259 ASN LYS ASP ILE ALA LEU GLY VAL PHE ASP VAL VAL VAL SEQRES 17 C 259 THR ASP PRO SER CYS PRO ALA SER VAL LEU LYS CYS ALA SEQRES 18 C 259 GLU ALA LEU GLN LEU PRO VAL VAL SER GLN GLU TRP VAL SEQRES 19 C 259 ILE GLN CYS LEU ILE VAL GLY GLU ARG ILE GLY PHE LYS SEQRES 20 C 259 GLN HIS PRO LYS TYR LYS HIS ASP TYR VAL SER HIS SEQRES 1 D 259 ALA LEU GLU GLU GLN ARG GLY PRO LEU PRO LEU ASN LYS SEQRES 2 D 259 THR LEU PHE LEU GLY TYR ALA PHE LEU LEU THR MET ALA SEQRES 3 D 259 THR THR SER ASP LYS LEU ALA SER ARG SER LYS LEU PRO SEQRES 4 D 259 ASP GLY PRO THR GLY SER SER GLU GLU GLU GLU GLU PHE SEQRES 5 D 259 LEU GLU ILE PRO PRO PHE ASN LYS GLN TYR THR GLU SER SEQRES 6 D 259 GLN LEU ARG ALA GLY ALA GLY TYR ILE LEU GLU ASP PHE SEQRES 7 D 259 ASN GLU ALA GLN CYS ASN THR ALA TYR GLN CYS LEU LEU SEQRES 8 D 259 ILE ALA ASP GLN HIS CYS ARG THR ARG LYS TYR PHE LEU SEQRES 9 D 259 CYS LEU ALA SER GLY ILE PRO CYS VAL SER HIS VAL TRP SEQRES 10 D 259 VAL HIS ASP SER CYS HIS ALA ASN GLN LEU GLN ASN TYR SEQRES 11 D 259 ARG ASN TYR LEU LEU PRO ALA GLY TYR SER LEU GLU GLU SEQRES 12 D 259 GLN ARG ILE LEU ASP TRP GLN PRO ARG GLU ASN PRO PHE SEQRES 13 D 259 GLN ASN LEU LYS VAL LEU LEU VAL SER ASP GLN GLN GLN SEQRES 14 D 259 ASN PHE LEU GLU LEU TRP SER GLU ILE LEU MET THR GLY SEQRES 15 D 259 GLY ALA ALA SER VAL LYS GLN HIS HIS SER SER ALA HIS SEQRES 16 D 259 ASN LYS ASP ILE ALA LEU GLY VAL PHE ASP VAL VAL VAL SEQRES 17 D 259 THR ASP PRO SER CYS PRO ALA SER VAL LEU LYS CYS ALA SEQRES 18 D 259 GLU ALA LEU GLN LEU PRO VAL VAL SER GLN GLU TRP VAL SEQRES 19 D 259 ILE GLN CYS LEU ILE VAL GLY GLU ARG ILE GLY PHE LYS SEQRES 20 D 259 GLN HIS PRO LYS TYR LYS HIS ASP TYR VAL SER HIS HET ZN A 1 1 HET ZN B 1 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *216(H2 O) HELIX 1 1 CYS A 176 ARG A 181 1 6 HELIX 2 2 CYS A 277 ASN A 288 1 12 HELIX 3 3 GLN B 165 MET B 169 5 5 HELIX 4 4 CYS B 176 ARG B 181 1 6 HELIX 5 5 CYS B 277 ASN B 288 1 12 HELIX 6 6 ALA C 1714 GLY C 1720 1 7 HELIX 7 7 ASN C 1772 ALA C 1782 1 11 HELIX 8 8 THR C 1812 GLY C 1822 1 11 HELIX 9 9 HIS C 1828 ASN C 1838 1 11 HELIX 10 10 ASN C 1842 TYR C 1846 5 5 HELIX 11 11 PHE C 1884 GLY C 1895 1 12 HELIX 12 12 ALA C 1913 PHE C 1917 5 5 HELIX 13 13 PRO C 1927 GLN C 1938 1 12 HELIX 14 14 SER C 1943 GLY C 1954 1 12 HELIX 15 15 HIS C 1962 LYS C 1966 5 5 HELIX 16 16 LEU D 1715 GLY D 1720 1 6 HELIX 17 17 ASN D 1772 GLY D 1783 1 12 HELIX 18 18 ASN D 1792 ALA D 1799 1 8 HELIX 19 19 THR D 1812 GLY D 1822 1 11 HELIX 20 20 HIS D 1828 ASN D 1838 1 11 HELIX 21 21 ASN D 1842 TYR D 1846 5 5 HELIX 22 22 PHE D 1884 GLY D 1895 1 12 HELIX 23 23 PRO D 1927 LEU D 1937 1 11 HELIX 24 24 SER D 1943 GLY D 1954 1 12 HELIX 25 25 HIS D 1962 LYS D 1966 5 5 SHEET 1 A 4 ARG A 110 PHE A 113 0 SHEET 2 A 4 THR A 140 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N ARG A 196 O ASN A 235 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O PHE A 134 N THR A 125 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O GLY A 266 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 B 7 SER A 215 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 B 7 GLU A 204 LEU A 206 -1 N GLU A 204 O VAL A 217 SHEET 1 C 4 ARG B 110 GLY B 112 0 SHEET 2 C 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 C 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 C 4 ILE B 195 GLU B 198 -1 N ARG B 196 O ASN B 235 SHEET 1 D 7 CYS B 124 SER B 127 0 SHEET 2 D 7 LYS B 132 CYS B 135 -1 O PHE B 134 N THR B 125 SHEET 3 D 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 D 7 ILE B 251 GLU B 258 -1 N LEU B 257 O GLY B 266 SHEET 5 D 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 D 7 SER B 215 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 D 7 GLU B 204 LEU B 206 -1 N GLU B 204 O VAL B 217 SHEET 1 E 4 TYR C1786 ILE C1787 0 SHEET 2 E 4 TYR C1732 LEU C1736 1 N PHE C1734 O TYR C1786 SHEET 3 E 4 GLN C1801 ALA C1806 1 O ILE C1805 N LEU C1735 SHEET 4 E 4 CYS C1825 SER C1827 1 O VAL C1826 N LEU C1804 SHEET 1 F 2 GLY C1851 SER C1853 0 SHEET 2 F 2 ARG C1858 LEU C1860 -1 O LEU C1860 N GLY C1851 SHEET 1 G 4 SER C1899 HIS C1904 0 SHEET 2 G 4 LYS C1873 SER C1878 1 N VAL C1874 O SER C1899 SHEET 3 G 4 VAL C1919 THR C1922 1 O VAL C1921 N LEU C1875 SHEET 4 G 4 VAL C1941 VAL C1942 1 O VAL C1942 N VAL C1920 SHEET 1 H 4 TYR D1786 ILE D1787 0 SHEET 2 H 4 TYR D1732 LEU D1736 1 N PHE D1734 O TYR D1786 SHEET 3 H 4 GLN D1801 ALA D1806 1 O ILE D1805 N LEU D1735 SHEET 4 H 4 CYS D1825 SER D1827 1 O VAL D1826 N LEU D1804 SHEET 1 I 2 GLY D1851 SER D1853 0 SHEET 2 I 2 ARG D1858 LEU D1860 -1 O LEU D1860 N GLY D1851 SHEET 1 J 4 SER D1899 HIS D1904 0 SHEET 2 J 4 LYS D1873 SER D1878 1 N LEU D1876 O LYS D1901 SHEET 3 J 4 VAL D1919 THR D1922 1 O VAL D1921 N LEU D1875 SHEET 4 J 4 VAL D1941 VAL D1942 1 O VAL D1942 N VAL D1920 SSBOND 1 CYS C 1796 CYS C 1802 1555 1555 2.62 SSBOND 2 CYS D 1796 CYS D 1802 1555 1555 2.47 LINK ZN ZN A 1 SG CYS A 176 1555 1555 2.22 LINK ZN ZN A 1 ND1 HIS A 179 1555 1555 2.23 LINK ZN ZN B 1 SG CYS B 176 1555 1555 2.27 LINK ZN ZN B 1 ND1 HIS B 179 1555 1555 2.12 LINK ZN ZN B 1 SG CYS B 238 1555 1555 2.33 LINK ZN ZN A 1 SG CYS A 238 1555 1555 2.55 LINK ZN ZN A 1 SG CYS A 242 1555 1555 2.45 LINK ZN ZN B 1 SG CYS B 242 1555 1555 2.52 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 CRYST1 73.132 94.976 133.680 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007481 0.00000