PDB Short entry for 1L3H
HEADER    IMMUNE SYSTEM                           27-FEB-02   1L3H              
TITLE     NMR STRUCTURE OF P41ICF, A POTENT INHIBITOR OF HUMAN                  
TITLE    2 CATHEPSIN L                                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: MHC CLASS II-ASSOCIATED P41 INVARIANT CHAIN                
COMPND   3 FRAGMENT (P41ICF);                                                   
COMPND   4 CHAIN: A;                                                            
COMPND   5 FRAGMENT: THYROGLOBULIN-LIKE DOMAIN;                                 
COMPND   6 SYNONYM: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, GAMMA              
COMPND   7 CHAIN;                                                               
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.             
KEYWDS    ALPHA HELIX, BETA SHEET, DISULFIDE BONDS, IMMUNE SYSTEM               
EXPDTA    SOLUTION NMR                                                          
NUMMDL    30                                                                    
AUTHOR    C.CHIVA,P.BARTHE,A.CODINA,E.GIRALT                                    
REVDAT   2   24-FEB-09 1L3H    1       VERSN                                    
REVDAT   1   04-MAR-03 1L3H    0                                                
JRNL        AUTH   C.CHIVA,P.BARTHE,A.CODINA,M.GAIRI,F.MOLINA,                  
JRNL        AUTH 2 C.GRANIER,M.PUGNIERE,T.INUI,H.NISHIO,Y.NISHIUCHI,            
JRNL        AUTH 3 T.KIMURA,S.SAKAKIBARA,F.ALBERICIO,E.GIRALT                   
JRNL        TITL   SYNTHESIS AND NMR STRUCTURE OF P41ICF, A POTENT              
JRNL        TITL 2 INHIBITOR OF HUMAN CATHEPSIN L                               
JRNL        REF    J.AM.CHEM.SOC.                V. 125  1508 2003              
JRNL        REFN                   ISSN 0002-7863                               
JRNL        PMID   12568610                                                     
JRNL        DOI    10.1021/JA0207908                                            
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : AMBER 5.0                                            
REMARK   3   AUTHORS     : CASE                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL       
REMARK   3  OF 981 RESTRAINTS, 925 ARE NOE-DERIVED DISTANCE CONSTRAINTS,        
REMARK   3  56 DIHEDRAL ANGLE RESTRAINTS                                        
REMARK   4                                                                      
REMARK   4 1L3H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-02.                  
REMARK 100 THE RCSB ID CODE IS RCSB015607.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 288                                
REMARK 210  PH                             : 5.7                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1MM P41ICF; 20MM PHOSPHATE         
REMARK 210                                   BUFFER, 0.01MM NAN3                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : DQF-COSY, 2D TOCSY, 2D NOESY       
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ, 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE, NMRVIEW, DYANA 1.5        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS AND         
REMARK 210                                   SIMULATED ANNEALING WITH           
REMARK 210                                   RESTRAINED MOLECULAR DYNAMICS      
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 600                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 30                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY,TARGET FUNCTION             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D              
REMARK 210  HOMONUCLEAR TECHNIQUES.                                             
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   3.5 DEGREES          
REMARK 500  2 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   4.5 DEGREES          
REMARK 500  5 TYR A  35   CB  -  CG  -  CD2 ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  6 ARG A  55   NE  -  CZ  -  NH1 ANGL. DEV. =   3.4 DEGREES          
REMARK 500  9 ARG A  20   NE  -  CZ  -  NH1 ANGL. DEV. =   3.6 DEGREES          
REMARK 500 11 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   3.6 DEGREES          
REMARK 500 12 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   3.5 DEGREES          
REMARK 500 14 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   3.6 DEGREES          
REMARK 500 15 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   3.6 DEGREES          
REMARK 500 17 TYR A  35   CB  -  CG  -  CD2 ANGL. DEV. =  -3.6 DEGREES          
REMARK 500 19 ARG A  55   NE  -  CZ  -  NH1 ANGL. DEV. =   3.4 DEGREES          
REMARK 500 20 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   3.8 DEGREES          
REMARK 500 22 TYR A  35   CB  -  CG  -  CD2 ANGL. DEV. =  -4.0 DEGREES          
REMARK 500 22 ARG A  57   NE  -  CZ  -  NH1 ANGL. DEV. =   4.2 DEGREES          
REMARK 500 24 ARG A  20   NE  -  CZ  -  NH1 ANGL. DEV. =   3.0 DEGREES          
REMARK 500 25 TYR A  40   CB  -  CG  -  CD2 ANGL. DEV. =  -4.0 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 VAL A  14       47.62    -73.92                                   
REMARK 500  1 PRO A  31       -8.53    -51.25                                   
REMARK 500  1 ARG A  55      103.81    -51.69                                   
REMARK 500  1 SER A  63       33.17    -65.81                                   
REMARK 500  1 GLU A  64        4.08    -61.64                                   
REMARK 500  2 PRO A  52       18.82    -69.15                                   
REMARK 500  2 ARG A  55       94.27    -56.77                                   
REMARK 500  2 ARG A  57        1.13    -63.56                                   
REMARK 500  2 SER A  63       62.99   -167.58                                   
REMARK 500  3 PRO A  52       23.20    -70.15                                   
REMARK 500  3 ARG A  55      102.84    -45.54                                   
REMARK 500  3 ASN A  61       49.55    -76.29                                   
REMARK 500  3 CYS A  62      107.87    -56.10                                   
REMARK 500  3 GLU A  64       23.69    -69.63                                   
REMARK 500  4 LYS A   3      -62.14    -21.62                                   
REMARK 500  4 HIS A  15       61.79   -116.40                                   
REMARK 500  4 ASN A  53       -5.02     65.11                                   
REMARK 500  4 ARG A  55       91.89    -60.95                                   
REMARK 500  4 ASN A  61       61.68   -112.11                                   
REMARK 500  4 CYS A  62      106.66    -52.24                                   
REMARK 500  4 SER A  63       25.39     47.22                                   
REMARK 500  5 ARG A  55      106.08    -59.89                                   
REMARK 500  5 ARG A  57        1.50    -65.50                                   
REMARK 500  6 PRO A  31       -9.09    -54.45                                   
REMARK 500  6 ASN A  53        6.63     59.73                                   
REMARK 500  6 ARG A  55      109.21    -42.42                                   
REMARK 500  6 GLU A  64       68.90    -62.63                                   
REMARK 500  7 PRO A  31      -18.76    -48.21                                   
REMARK 500  7 ASN A  53       -0.47     61.22                                   
REMARK 500  7 ARG A  55       95.22    -43.57                                   
REMARK 500  7 SER A  63       18.30    -64.96                                   
REMARK 500  8 HIS A  15       70.87   -111.03                                   
REMARK 500  8 ASN A  53       -0.82     65.18                                   
REMARK 500  8 ARG A  55       98.82    -56.44                                   
REMARK 500  8 CYS A  62     -172.64    -65.32                                   
REMARK 500  8 SER A  63       51.63    -64.70                                   
REMARK 500  8 GLU A  64       32.84    -69.65                                   
REMARK 500  9 HIS A  15       63.68   -111.41                                   
REMARK 500  9 ASN A  53       -2.55     59.44                                   
REMARK 500  9 ARG A  55       99.02    -46.16                                   
REMARK 500  9 ARG A  57       23.33    -79.27                                   
REMARK 500  9 GLU A  64       26.10    -75.34                                   
REMARK 500 10 HIS A  15       53.62   -114.86                                   
REMARK 500 10 GLU A  25        0.15    -64.64                                   
REMARK 500 10 ARG A  55       94.17    -62.83                                   
REMARK 500 10 CYS A  62      105.73    -57.16                                   
REMARK 500 10 SER A  63       19.31     54.29                                   
REMARK 500 11 ARG A  55      103.02    -43.80                                   
REMARK 500 11 ARG A  57       13.72    -69.07                                   
REMARK 500 12 HIS A  15       63.19   -114.36                                   
REMARK 500 12 ASN A  53       -1.51     63.84                                   
REMARK 500 12 ARG A  55       99.17    -54.85                                   
REMARK 500 12 CYS A  62      107.54    -52.74                                   
REMARK 500 13 PRO A  52       23.20    -68.85                                   
REMARK 500 13 ARG A  55       97.94    -57.25                                   
REMARK 500 13 CYS A  62      105.83    -53.45                                   
REMARK 500 13 SER A  63       13.89   -150.05                                   
REMARK 500 13 GLU A  64        7.28    -65.46                                   
REMARK 500 14 ASN A  53       -3.62     71.42                                   
REMARK 500 14 ARG A  55       97.46    -58.10                                   
REMARK 500 14 SER A  63       27.09     49.81                                   
REMARK 500 15 PRO A  52       23.62    -69.16                                   
REMARK 500 15 ARG A  55      101.83    -53.93                                   
REMARK 500 15 SER A  63       20.76   -154.98                                   
REMARK 500 15 GLU A  64       21.44    -70.52                                   
REMARK 500 16 HIS A  10      -33.16   -130.51                                   
REMARK 500 16 PRO A  16      107.45    -43.72                                   
REMARK 500 16 PRO A  31       -9.51    -51.39                                   
REMARK 500 16 ASN A  53       -5.23     62.47                                   
REMARK 500 16 ARG A  55      102.95    -50.23                                   
REMARK 500 16 GLU A  64       22.27    -52.07                                   
REMARK 500 17 ASN A  53       -0.24     61.68                                   
REMARK 500 17 ARG A  55      106.38    -49.76                                   
REMARK 500 17 GLU A  64       11.11     57.44                                   
REMARK 500 18 HIS A  15       53.20   -118.68                                   
REMARK 500 18 ARG A  55      105.17    -52.77                                   
REMARK 500 18 GLU A  64       19.15     48.91                                   
REMARK 500 19 PRO A  46       -2.21    -58.82                                   
REMARK 500 19 SER A  63       19.01   -157.72                                   
REMARK 500 19 GLU A  64       25.18    -77.51                                   
REMARK 500 20 CYS A  62     -176.20    -68.12                                   
REMARK 500 20 SER A  63       74.19    -65.64                                   
REMARK 500 21 HIS A  15       63.20   -113.52                                   
REMARK 500 21 ASN A  53       -2.88     59.99                                   
REMARK 500 21 ARG A  55      106.36    -46.94                                   
REMARK 500 21 ARG A  57       36.23    -89.69                                   
REMARK 500 21 SER A  63       24.63   -159.62                                   
REMARK 500 21 GLU A  64       34.90    -70.97                                   
REMARK 500 22 TYR A  35       77.51   -111.22                                   
REMARK 500 22 ASN A  53        3.60     59.93                                   
REMARK 500 22 ARG A  55      102.83    -46.88                                   
REMARK 500 22 ARG A  57       -4.75    -59.99                                   
REMARK 500 22 CYS A  62     -178.66    -68.92                                   
REMARK 500 22 SER A  63       35.02    -66.95                                   
REMARK 500 22 GLU A  64       66.17    -69.51                                   
REMARK 500 23 SER A  18      107.99    -49.28                                   
REMARK 500 23 PHE A  19       89.10   -152.64                                   
REMARK 500 23 ASN A  53       15.15     59.50                                   
REMARK 500 24 SER A  18      107.08     69.16                                   
REMARK 500 24 ASN A  53       -3.03     61.20                                   
REMARK 500 24 ARG A  55      102.91    -40.35                                   
REMARK 500 24 CYS A  62       95.39    -60.41                                   
REMARK 500 24 GLU A  64       19.58     56.44                                   
REMARK 500 25 HIS A  15       71.87   -111.67                                   
REMARK 500 25 ARG A  55       93.00    -41.17                                   
REMARK 500 25 ARG A  57        9.05    -69.20                                   
REMARK 500 25 CYS A  62       95.51    -60.68                                   
REMARK 500 25 SER A  63       34.43    -89.05                                   
REMARK 500 26 ASN A  53        2.24     59.86                                   
REMARK 500 26 ARG A  55      103.86    -45.27                                   
REMARK 500 26 ASN A  61       39.88    -74.00                                   
REMARK 500 27 HIS A  15       62.04   -118.73                                   
REMARK 500 27 PRO A  46       -5.83    -57.72                                   
REMARK 500 27 PRO A  52       22.57    -69.31                                   
REMARK 500 27 ARG A  55       96.50    -62.51                                   
REMARK 500 27 ASN A  61       78.12   -116.43                                   
REMARK 500 27 SER A  63       60.41    -67.87                                   
REMARK 500 28 PRO A  52       24.01    -71.81                                   
REMARK 500 28 ARG A  55      107.88    -57.10                                   
REMARK 500 28 ARG A  57        7.72    -67.62                                   
REMARK 500 28 CYS A  62      106.95    -46.30                                   
REMARK 500 28 GLU A  64       10.93   -141.09                                   
REMARK 500 29 ASN A  53        2.00     59.50                                   
REMARK 500 29 CYS A  62       98.80    -65.85                                   
REMARK 500 29 SER A  63       23.81    -77.13                                   
REMARK 500 30 HIS A  15       65.53   -112.98                                   
REMARK 500 30 ARG A  55      105.08    -55.64                                   
REMARK 500 30 CYS A  62       98.50    -57.14                                   
REMARK 500 30 SER A  63       31.62    -76.60                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500 14 TYR A  35         0.07    SIDE_CHAIN                              
REMARK 500 18 ARG A  20         0.08    SIDE_CHAIN                              
REMARK 500 23 TYR A  35         0.11    SIDE_CHAIN                              
REMARK 500 27 TYR A  29         0.08    SIDE_CHAIN                              
REMARK 500 29 ARG A  55         0.09    SIDE_CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1ICF   RELATED DB: PDB                                   
REMARK 900 1ICF CONTAINS THE SAME PROTEIN COMPLEXED WITH CATHEPSIN L.           
DBREF  1L3H A    1    65  UNP    P04233   HG2A_HUMAN     210    274             
SEQRES   1 A   65  LEU THR LYS CYS GLN GLU GLU VAL SER HIS ILE PRO ALA          
SEQRES   2 A   65  VAL HIS PRO GLY SER PHE ARG PRO LYS CYS ASP GLU ASN          
SEQRES   3 A   65  GLY ASN TYR LEU PRO LEU GLN CYS TYR GLY SER ILE GLY          
SEQRES   4 A   65  TYR CYS TRP CYS VAL PHE PRO ASN GLY THR GLU VAL PRO          
SEQRES   5 A   65  ASN THR ARG SER ARG GLY HIS HIS ASN CYS SER GLU SER          
HELIX    1   1 THR A    2  ILE A   11  1                                  10    
SHEET    1   A 2 LEU A  32  TYR A  35  0                                        
SHEET    2   A 2 TYR A  40  CYS A  43 -1  O  TRP A  42   N  GLN A  33           
SSBOND   1 CYS A    4    CYS A   23                          1555   1555  2.03  
SSBOND   2 CYS A   34    CYS A   41                          1555   1555  2.05  
SSBOND   3 CYS A   43    CYS A   62                          1555   1555  2.03  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000