PDB Short entry for 1L3R HEADER TRANSFERASE 28-FEB-02 1L3R TITLE CRYSTAL STRUCTURE OF A TRANSITION STATE MIMIC OF THE CATALYTIC SUBUNIT TITLE 2 OF CAMP-DEPENDENT PROTEIN KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, MUSCLE/BRAIN FORM; COMPND 9 CHAIN: I; COMPND 10 FRAGMENT: RESIDUES 5-24; COMPND 11 SYNONYM: PKI-ALPHA; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 10 OF THE PEPTIDE IS NATURALLY FOUND IN MUS MUSCULUS (MOUSE). KEYWDS PROTEIN KINASE, PROTEIN-ALF3 COMPLEX, TRANSITION STATE MIMIC, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR MADHUSUDAN,P.AKAMINE,N.-H.XUONG,S.S.TAYLOR REVDAT 6 16-AUG-23 1L3R 1 REMARK REVDAT 5 27-OCT-21 1L3R 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1L3R 1 VERSN REVDAT 3 01-APR-03 1L3R 1 JRNL REVDAT 2 27-MAR-02 1L3R 1 JRNL REVDAT 1 20-MAR-02 1L3R 0 JRNL AUTH MADHUSUDAN,P.AKAMINE,N.H.XUONG,S.S.TAYLOR JRNL TITL CRYSTAL STRUCTURE OF A TRANSITION STATE MIMIC OF THE JRNL TITL 2 CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE. JRNL REF NAT.STRUCT.BIOL. V. 9 273 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 11896404 JRNL DOI 10.1038/NSB780 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.R.KNIGHTON,S.M.BELL,J.ZHENG,L.F.TEN EYCK,N.XUONG, REMARK 1 AUTH 2 S.S.TAYLOR,J.M.SOWADSKI REMARK 1 TITL 2.0 A REFINED CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF REMARK 1 TITL 2 CAMP-DEPENDENT PROTEIN KINASE COMPLEXED WITH A PEPTIDE REMARK 1 TITL 3 INHIBITOR AND DETERGENT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 49 357 1993 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444993000502 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.ZHENG,E.A.TRAFNY,D.R.KNIGHTON,N.XUONG,S.S.TAYLOR, REMARK 1 AUTH 2 L.F.TEN EYCK,J.M.SOWADSKI REMARK 1 TITL 2.2 A REFINED CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF REMARK 1 TITL 2 CAMP-DEPENDENT PROTEIN KINASE COMPLEXED WITH MNATP AND A REMARK 1 TITL 3 PEPTIDE INHIBITOR REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 49 362 1993 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444993000423 REMARK 1 REFERENCE 3 REMARK 1 AUTH MADHUSUDAN,E.A.TRAFNY,N.H.XUONG,J.A.ADAMS,L.F.TEN EYCK, REMARK 1 AUTH 2 S.S.TAYLOR,J.M.SOWADSKI REMARK 1 TITL CAMP-DEPENDENT PROTEIN KINASE: CRYSTALLOGRAFIC INSIGHTS INTO REMARK 1 TITL 2 SUBSTRATE RECOGNITION AND PHOSPHOTRANSFER REMARK 1 REF PROTEIN SCI. V. 3 176 1994 REMARK 1 REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 30443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1819 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96800 REMARK 3 B22 (A**2) : -10.94100 REMARK 3 B33 (A**2) : 9.97300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.280 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PHOSPHO_RESI.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : 58 CM LONG, PT-COATED, FUSED REMARK 200 SILICA, VERTICAL FOCUSMIRROR, REMARK 200 CYCLINDRICALLY BENT TRIANGULAR REMARK 200 SI(111) ASYMMETRIC CUT, REMARK 200 HORIZONTAL FOCUS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JBP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, BICINE, METHANOL, AMMONIUM REMARK 280 ACETATE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.34000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA E 5 REMARK 465 ALA E 6 REMARK 465 LYS E 7 REMARK 465 LYS E 8 REMARK 465 GLY E 9 REMARK 465 SEP E 10 REMARK 465 GLU E 11 REMARK 465 GLN E 12 REMARK 465 GLU E 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN E 2 CG OD1 ND2 REMARK 470 SER E 14 OG REMARK 470 VAL E 15 CG1 CG2 REMARK 470 LYS E 16 CG CD CE NZ REMARK 470 GLU E 17 CG CD OE1 OE2 REMARK 470 LYS E 21 CG CD CE NZ REMARK 470 GLU E 24 CG CD OE1 OE2 REMARK 470 LYS E 28 CG CD CE NZ REMARK 470 GLU E 64 CG CD OE1 OE2 REMARK 470 LYS E 105 CG CD CE NZ REMARK 470 LYS E 285 CG CD CE NZ REMARK 470 ASN E 286 CG OD1 ND2 REMARK 470 LYS E 309 CG CD CE NZ REMARK 470 GLU E 311 CG CD OE1 OE2 REMARK 470 LYS E 317 CG CD CE NZ REMARK 470 PHE E 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 319 CG CD CE NZ REMARK 470 GLU E 331 CG CD OE1 OE2 REMARK 470 GLU E 334 CG CD OE1 OE2 REMARK 470 ILE E 339 CG1 CG2 CD1 REMARK 470 LYS E 345 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 41 3.94 -68.91 REMARK 500 ILE E 46 -60.36 -102.22 REMARK 500 ASP E 166 44.24 -148.51 REMARK 500 ASP E 184 81.19 57.18 REMARK 500 LEU E 273 48.28 -86.11 REMARK 500 LYS E 319 33.72 -72.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AF3 E 400 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 166 OD1 REMARK 620 2 AF3 E 400 F1 65.8 REMARK 620 3 AF3 E 400 F2 67.3 119.7 REMARK 620 4 AF3 E 400 F3 139.3 120.0 120.2 REMARK 620 5 ASP E 184 OD2 67.6 59.7 68.8 152.7 REMARK 620 6 ADP E 381 O3B 119.9 82.8 89.7 100.5 52.4 REMARK 620 7 SER I 21 OG 42.9 85.6 84.8 96.5 110.4 162.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 392 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN E 171 OD1 REMARK 620 2 ASP E 184 OD2 93.7 REMARK 620 3 ADP E 381 O2A 95.2 87.2 REMARK 620 4 ADP E 381 O3B 175.0 82.4 81.4 REMARK 620 5 AF3 E 400 AL 132.4 82.3 131.6 50.4 REMARK 620 6 AF3 E 400 F1 96.8 94.1 167.8 86.7 37.1 REMARK 620 7 HOH E 578 O 90.5 174.0 88.2 93.2 98.0 89.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 391 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 184 OD2 REMARK 620 2 ASP E 184 OD1 57.9 REMARK 620 3 ADP E 381 O2B 77.3 86.5 REMARK 620 4 AF3 E 400 F2 96.1 152.6 96.7 REMARK 620 5 AF3 E 400 AL 70.2 128.1 83.0 27.2 REMARK 620 6 HOH E 576 O 160.4 103.6 96.2 103.0 127.9 REMARK 620 7 HOH E 577 O 93.7 89.3 171.0 83.4 93.4 92.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP E 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF3 E 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD E 382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1APM RELATED DB: PDB REMARK 900 1APM CONTAINS THE SAME PROTEIN COMPLEX WITH PEPTIDE INHIBITOR AND REMARK 900 DETERGENT REMARK 900 RELATED ID: 1ATP RELATED DB: PDB REMARK 900 1ATP CONTAINS THE SAME PROTEIN COMPLEXED WITH MNATP AND PEPTIDE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1JBP RELATED DB: PDB REMARK 900 1JBP CONTAINS THE SAME PROTEIN COMPLEXED WITH ADP AND THE SAME REMARK 900 PEPTIDE SUBSTRATE DBREF 1L3R E 1 350 UNP P05132 KAPCA_MOUSE 1 350 DBREF 1L3R I 5 24 UNP P27776 IPKA_MOUSE 5 24 SEQADV 1L3R SEP E 10 UNP P05132 SER 10 MODIFIED RESIDUE SEQADV 1L3R SEP E 139 UNP P05132 SER 139 MODIFIED RESIDUE SEQADV 1L3R TPO E 197 UNP P05132 THR 197 MODIFIED RESIDUE SEQADV 1L3R SEP E 338 UNP P05132 SER 338 MODIFIED RESIDUE SEQADV 1L3R ALA I 20 UNP P27776 ASN 20 ENGINEERED MUTATION SEQADV 1L3R SER I 21 UNP P27776 ALA 21 ENGINEERED MUTATION SEQRES 1 E 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP GLU GLN GLU SEQRES 2 E 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 E 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 E 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 E 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 E 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 E 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 E 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 E 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 E 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 E 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 E 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 E 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 E 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 E 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 E 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 E 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 E 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 E 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 E 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 E 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 E 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 E 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 E 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 E 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 E 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 E 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ALA SER ILE HIS ASP MODRES 1L3R SEP E 139 SER PHOSPHOSERINE MODRES 1L3R TPO E 197 THR PHOSPHOTHREONINE MODRES 1L3R SEP E 338 SER PHOSPHOSERINE HET SEP E 139 10 HET TPO E 197 11 HET SEP E 338 10 HET MG E 391 1 HET MG E 392 1 HET ADP E 381 27 HET AF3 E 400 4 HET MPD E 382 8 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AF3 ALUMINUM FLUORIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MG 2(MG 2+) FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 AF3 AL F3 FORMUL 7 MPD C6 H14 O2 FORMUL 8 HOH *233(H2 O) HELIX 1 1 SER E 14 THR E 32 1 19 HELIX 2 2 GLN E 39 ASP E 41 5 3 HELIX 3 3 LYS E 76 LEU E 82 1 7 HELIX 4 4 GLN E 84 GLN E 96 1 13 HELIX 5 5 GLU E 127 GLY E 136 1 10 HELIX 6 6 SEP E 139 LEU E 160 1 22 HELIX 7 7 LYS E 168 GLU E 170 5 3 HELIX 8 8 THR E 201 LEU E 205 5 5 HELIX 9 9 ALA E 206 LEU E 211 1 6 HELIX 10 10 LYS E 217 GLY E 234 1 18 HELIX 11 11 GLN E 242 GLY E 253 1 12 HELIX 12 12 SER E 262 LEU E 273 1 12 HELIX 13 13 VAL E 288 ASN E 293 1 6 HELIX 14 14 HIS E 294 ALA E 298 5 5 HELIX 15 15 ASP E 301 GLN E 307 1 7 HELIX 16 16 THR I 5 SER I 13 1 9 SHEET 1 A 5 PHE E 43 THR E 51 0 SHEET 2 A 5 ARG E 56 HIS E 62 -1 O LEU E 59 N LYS E 47 SHEET 3 A 5 HIS E 68 ASP E 75 -1 O MET E 71 N MET E 58 SHEET 4 A 5 ASN E 115 GLU E 121 -1 O MET E 118 N LYS E 72 SHEET 5 A 5 LEU E 106 LYS E 111 -1 N PHE E 110 O TYR E 117 SHEET 1 B 2 LEU E 162 ILE E 163 0 SHEET 2 B 2 LYS E 189 ARG E 190 -1 O LYS E 189 N ILE E 163 SHEET 1 C 2 LEU E 172 ILE E 174 0 SHEET 2 C 2 ILE E 180 VAL E 182 -1 O GLN E 181 N LEU E 173 LINK C PHE E 138 N SEP E 139 1555 1555 1.33 LINK C SEP E 139 N GLU E 140 1555 1555 1.33 LINK C TRP E 196 N TPO E 197 1555 1555 1.33 LINK C TPO E 197 N LEU E 198 1555 1555 1.33 LINK C VAL E 337 N SEP E 338 1555 1555 1.33 LINK C SEP E 338 N ILE E 339 1555 1555 1.33 LINK OD1 ASP E 166 AL AF3 E 400 1555 1555 3.61 LINK OD1 ASN E 171 MG MG E 392 1555 1555 2.11 LINK OD2 ASP E 184 MG MG E 391 1555 1555 2.32 LINK OD1 ASP E 184 MG MG E 391 1555 1555 2.21 LINK OD2 ASP E 184 MG MG E 392 1555 1555 2.00 LINK OD2 ASP E 184 AL AF3 E 400 1555 1555 3.37 LINK O2B ADP E 381 MG MG E 391 1555 1555 2.13 LINK O2A ADP E 381 MG MG E 392 1555 1555 1.88 LINK O3B ADP E 381 MG MG E 392 1555 1555 2.06 LINK O3B ADP E 381 AL AF3 E 400 1555 1555 2.31 LINK MG MG E 391 F2 AF3 E 400 1555 1555 1.97 LINK MG MG E 391 AL AF3 E 400 1555 1555 3.35 LINK MG MG E 391 O HOH E 576 1555 1555 2.12 LINK MG MG E 391 O HOH E 577 1555 1555 2.36 LINK MG MG E 392 AL AF3 E 400 1555 1555 2.99 LINK MG MG E 392 F1 AF3 E 400 1555 1555 1.97 LINK MG MG E 392 O HOH E 578 1555 1555 2.18 LINK AL AF3 E 400 OG SER I 21 1555 1555 2.27 SITE 1 AC1 5 ASP E 184 ADP E 381 AF3 E 400 HOH E 576 SITE 2 AC1 5 HOH E 577 SITE 1 AC2 5 ASN E 171 ASP E 184 ADP E 381 AF3 E 400 SITE 2 AC2 5 HOH E 578 SITE 1 AC3 25 GLY E 50 GLY E 52 SER E 53 PHE E 54 SITE 2 AC3 25 GLY E 55 VAL E 57 ALA E 70 LYS E 72 SITE 3 AC3 25 VAL E 104 MET E 120 GLU E 121 VAL E 123 SITE 4 AC3 25 GLU E 127 GLU E 170 ASN E 171 LEU E 173 SITE 5 AC3 25 THR E 183 ASP E 184 PHE E 327 MG E 391 SITE 6 AC3 25 MG E 392 AF3 E 400 HOH E 414 HOH E 578 SITE 7 AC3 25 ARG I 18 SITE 1 AC4 13 GLY E 52 SER E 53 PHE E 54 ASP E 166 SITE 2 AC4 13 LYS E 168 ASN E 171 ASP E 184 ADP E 381 SITE 3 AC4 13 MG E 391 MG E 392 HOH E 577 HOH E 578 SITE 4 AC4 13 SER I 21 SITE 1 AC5 5 PHE E 18 LEU E 152 GLU E 155 TYR E 306 SITE 2 AC5 5 HOH E 609 CRYST1 72.680 75.700 80.550 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012415 0.00000