PDB Short entry for 1L4D HEADER HYDROLASE/HYDROLASE ACTIVATOR 04-MAR-02 1L4D TITLE CRYSTAL STRUCTURE OF MICROPLASMINOGEN-STREPTOKINASE ALPHA DOMAIN TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 543-791; COMPND 5 EC: 3.4.21.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: STREPTOKINASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: ALPHA DOMAIN, RESIDUES 14-147; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STREPTOCOCCUS DYSGALACTIAE SUBSP. EQUISIMILIS; SOURCE 12 ORGANISM_TAXID: 119602; SOURCE 13 STRAIN: SUBSP. EQUISIMILIS; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS STREPTOKINASE, PLASMINOGEN, PROTEIN COMPLEX, HYDROLASE-HYDROLASE KEYWDS 2 ACTIVATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.WAKEHAM,S.TERZYAN,P.ZHAI,J.A.LOY,J.TANG,X.C.ZHANG REVDAT 4 16-AUG-23 1L4D 1 REMARK REVDAT 3 27-OCT-21 1L4D 1 REMARK SEQADV REVDAT 2 24-FEB-09 1L4D 1 VERSN REVDAT 1 11-DEC-02 1L4D 0 JRNL AUTH N.WAKEHAM,S.TERZYAN,P.ZHAI,J.A.LOY,J.TANG,X.C.ZHANG JRNL TITL EFFECTS OF DELETION OF STREPTOKINASE RESIDUES 48-59 ON JRNL TITL 2 PLASMINOGEN ACTIVATION JRNL REF PROTEIN ENG. V. 15 753 2002 JRNL REFN ISSN 0269-2139 JRNL PMID 12456874 JRNL DOI 10.1093/PROTEIN/15.9.753 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2793 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.33000 REMARK 3 B22 (A**2) : -12.12200 REMARK 3 B33 (A**2) : 4.79200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.730 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 43.85 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARA REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 23.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DDJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LI2SO4, HEPES, MG ACETATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.41100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.41100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.08850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.08850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.41100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.08850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.41100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.72450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.08850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CONTAINS ONE MOLECULE OF MICROPLASMINOGEN AND ONE MOLECULE REMARK 300 OF STREPTOKINASE ALPHA DOMAIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.44900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.41100 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.44900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.41100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 181 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 47 REMARK 465 SER B 60 REMARK 465 LYS B 61 REMARK 465 PRO B 62 REMARK 465 PHE B 63 REMARK 465 ALA B 64 REMARK 465 THR B 65 REMARK 465 ASP B 66 REMARK 465 SER B 67 REMARK 465 GLY B 68 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 610 CZ NH1 NH2 REMARK 480 GLN A 689 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 642 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 CYS A 666 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 CYS A 737 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 557 61.21 61.88 REMARK 500 HIS A 621 -56.87 -134.57 REMARK 500 ARG A 677 -14.52 75.83 REMARK 500 GLN A 689 -164.17 -76.25 REMARK 500 GLU A 706 137.40 -37.59 REMARK 500 PHE A 715 -106.10 -111.07 REMARK 500 LYS A 750 -62.84 64.47 REMARK 500 ASP A 751 11.42 -146.27 REMARK 500 LYS A 770 63.95 -150.25 REMARK 500 ARG B 45 143.11 162.31 REMARK 500 HIS B 92 -153.19 -86.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DDJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PLASMINOGEN CATALYTIC DOMAIN REMARK 900 RELATED ID: 1BML RELATED DB: PDB REMARK 900 COMPLEX OF THE CATALYTIC DOMAIN OF HUMAN PLASMIN AND STREPTOKINASE REMARK 900 RELATED ID: 1QRZ RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF PLASMINOGEN REMARK 900 RELATED ID: 1BUI RELATED DB: PDB REMARK 900 STRUCTURE OF THE TERNARY MICROPLASMIN-STAPHYLOKINASE-MICROPLASMIN REMARK 900 COMPLEX: A PROTEINASE-COFACTOR-SUBSTRATE COMPLEX IN ACTION DBREF 1L4D A 543 791 UNP P00747 PLMN_HUMAN 562 810 DBREF 1L4D B 14 147 UNP P00779 STRP_STREQ 14 147 SEQADV 1L4D ALA A 741 UNP P00747 SER 760 ENGINEERED MUTATION SEQADV 1L4D B UNP P00779 HIS 48 DELETION SEQADV 1L4D B UNP P00779 GLY 49 DELETION SEQADV 1L4D B UNP P00779 GLY 50 DELETION SEQADV 1L4D B UNP P00779 LYS 51 DELETION SEQADV 1L4D B UNP P00779 THR 52 DELETION SEQADV 1L4D B UNP P00779 GLU 53 DELETION SEQADV 1L4D B UNP P00779 GLN 54 DELETION SEQADV 1L4D B UNP P00779 GLY 55 DELETION SEQADV 1L4D B UNP P00779 LEU 56 DELETION SEQADV 1L4D B UNP P00779 SER 57 DELETION SEQADV 1L4D B UNP P00779 PRO 58 DELETION SEQADV 1L4D B UNP P00779 LYS 59 DELETION SEQRES 1 A 249 ALA PRO SER PHE ASP CYS GLY LYS PRO GLN VAL GLU PRO SEQRES 2 A 249 LYS LYS CYS PRO GLY ARG VAL VAL GLY GLY CYS VAL ALA SEQRES 3 A 249 HIS PRO HIS SER TRP PRO TRP GLN VAL SER LEU ARG THR SEQRES 4 A 249 ARG PHE GLY MET HIS PHE CYS GLY GLY THR LEU ILE SER SEQRES 5 A 249 PRO GLU TRP VAL LEU THR ALA ALA HIS CYS LEU GLU LYS SEQRES 6 A 249 SER PRO ARG PRO SER SER TYR LYS VAL ILE LEU GLY ALA SEQRES 7 A 249 HIS GLN GLU VAL ASN LEU GLU PRO HIS VAL GLN GLU ILE SEQRES 8 A 249 GLU VAL SER ARG LEU PHE LEU GLU PRO THR ARG LYS ASP SEQRES 9 A 249 ILE ALA LEU LEU LYS LEU SER SER PRO ALA VAL ILE THR SEQRES 10 A 249 ASP LYS VAL ILE PRO ALA CYS LEU PRO SER PRO ASN TYR SEQRES 11 A 249 VAL VAL ALA ASP ARG THR GLU CYS PHE ILE THR GLY TRP SEQRES 12 A 249 GLY GLU THR GLN GLY THR PHE GLY ALA GLY LEU LEU LYS SEQRES 13 A 249 GLU ALA GLN LEU PRO VAL ILE GLU ASN LYS VAL CYS ASN SEQRES 14 A 249 ARG TYR GLU PHE LEU ASN GLY ARG VAL GLN SER THR GLU SEQRES 15 A 249 LEU CYS ALA GLY HIS LEU ALA GLY GLY THR ASP SER CYS SEQRES 16 A 249 GLN GLY ASP ALA GLY GLY PRO LEU VAL CYS PHE GLU LYS SEQRES 17 A 249 ASP LYS TYR ILE LEU GLN GLY VAL THR SER TRP GLY LEU SEQRES 18 A 249 GLY CYS ALA ARG PRO ASN LYS PRO GLY VAL TYR VAL ARG SEQRES 19 A 249 VAL SER ARG PHE VAL THR TRP ILE GLU GLY VAL MET ARG SEQRES 20 A 249 ASN ASN SEQRES 1 B 122 ASN ASN SER GLN LEU VAL VAL SER VAL ALA GLY THR VAL SEQRES 2 B 122 GLU GLY THR ASN GLN ASP ILE SER LEU LYS PHE PHE GLU SEQRES 3 B 122 ILE ASP LEU THR SER ARG PRO ALA SER LYS PRO PHE ALA SEQRES 4 B 122 THR ASP SER GLY ALA MET PRO HIS LYS LEU GLU LYS ALA SEQRES 5 B 122 ASP LEU LEU LYS ALA ILE GLN GLU GLN LEU ILE ALA ASN SEQRES 6 B 122 VAL HIS SER ASN ASP ASP TYR PHE GLU VAL ILE ASP PHE SEQRES 7 B 122 ALA SER ASP ALA THR ILE THR ASP ARG ASN GLY LYS VAL SEQRES 8 B 122 TYR PHE ALA ASP LYS ASP GLY SER VAL THR LEU PRO THR SEQRES 9 B 122 GLN PRO VAL GLN GLU PHE LEU LEU SER GLY HIS VAL ARG SEQRES 10 B 122 VAL ARG PRO TYR LYS HET SO4 A 215 5 HET SO4 A 216 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *213(H2 O) HELIX 1 1 HIS A 603 LYS A 607 5 5 HELIX 2 2 ARG A 610 SER A 612 5 3 HELIX 3 3 GLU A 706 ASN A 711 1 6 HELIX 4 4 PHE A 780 ASN A 791 1 12 HELIX 5 5 LYS B 76 ASN B 90 1 15 SHEET 1 A 8 CYS A 566 VAL A 567 0 SHEET 2 A 8 LYS A 698 ILE A 705 -1 N GLU A 699 O CYS A 566 SHEET 3 A 8 GLU A 679 GLY A 684 -1 O CYS A 680 N LEU A 702 SHEET 4 A 8 PRO A 744 GLU A 749 -1 O PRO A 744 N THR A 683 SHEET 5 A 8 LYS A 752 THR A 759 -1 O LYS A 752 N GLU A 749 SHEET 6 A 8 GLY A 772 ARG A 776 -1 N VAL A 775 O VAL A 758 SHEET 7 A 8 GLU A 724 ALA A 727 -1 O LEU A 725 N TYR A 774 SHEET 8 A 8 LYS A 698 ILE A 705 -1 N ILE A 705 O CYS A 726 SHEET 1 B 7 GLN A 631 LEU A 640 0 SHEET 2 B 7 TYR A 614 LEU A 618 -1 O TYR A 614 N VAL A 635 SHEET 3 B 7 GLN A 576 THR A 581 -1 O SER A 578 N ILE A 617 SHEET 4 B 7 HIS A 586 SER A 594 -1 N PHE A 587 O LEU A 579 SHEET 5 B 7 TRP A 597 ALA A 601 -1 O TRP A 597 N ILE A 593 SHEET 6 B 7 ILE A 647 LEU A 652 -1 N ALA A 648 O THR A 600 SHEET 7 B 7 GLN A 631 LEU A 640 -1 N SER A 636 O LYS A 651 SHEET 1 C11 ASP B 32 ILE B 33 0 SHEET 2 C11 GLN B 17 VAL B 26 -1 N GLY B 24 O ILE B 33 SHEET 3 C11 PHE B 38 THR B 43 -1 O PHE B 38 N VAL B 20 SHEET 4 C11 MET B 70 PRO B 71 1 N MET B 70 O ASP B 41 SHEET 5 C11 PHE B 38 THR B 43 1 O ASP B 41 N MET B 70 SHEET 6 C11 GLN B 17 VAL B 26 -1 N LEU B 18 O ILE B 40 SHEET 7 C11 GLU B 134 PRO B 145 1 O PHE B 135 N VAL B 19 SHEET 8 C11 PHE B 98 PHE B 103 -1 N GLU B 99 O ARG B 144 SHEET 9 C11 GLU B 134 PRO B 145 -1 O ARG B 142 N ILE B 101 SHEET 10 C11 THR B 108 ASP B 111 -1 O THR B 108 N SER B 138 SHEET 11 C11 VAL B 116 TYR B 117 -1 N TYR B 117 O ILE B 109 SHEET 1 D 2 LYS B 73 GLU B 75 0 SHEET 2 D 2 SER B 124 THR B 126 -1 O VAL B 125 N LEU B 74 SSBOND 1 CYS A 548 CYS A 666 1555 1555 2.01 SSBOND 2 CYS A 558 CYS A 566 1555 1555 2.03 SSBOND 3 CYS A 588 CYS A 604 1555 1555 2.04 SSBOND 4 CYS A 680 CYS A 747 1555 1555 2.04 SSBOND 5 CYS A 710 CYS A 726 1555 1555 2.02 SSBOND 6 CYS A 737 CYS A 765 1555 1555 2.08 CISPEP 1 GLN B 130 PRO B 131 0 -0.75 SITE 1 AC1 3 ARG A 644 GLN A 721 SER A 722 SITE 1 AC2 8 HOH A 170 PRO A 768 ASN A 769 LYS A 770 SITE 2 AC2 8 THR B 29 ASN B 30 ARG B 45 HOH B 162 CRYST1 67.449 94.177 126.822 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014826 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007885 0.00000