PDB Short entry for 1L4Z HEADER HYDROLASE/BLOOD CLOTTING 06-MAR-02 1L4Z TITLE X-RAY CRYSTAL STRUCTURE OF THE COMPLEX OF MICROPLASMINOGEN WITH ALPHA TITLE 2 DOMAIN OF STREPTOKINASE IN THE PRESENCE CADMIUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 544-791; COMPND 5 EC: 3.4.21.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: STREPTOKINASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: N TERMINAL ALPHA DOMAIN, RESIDUES 0-147; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL12; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STREPTOCOCCUS DYSGALACTIAE SUBSP. EQUISIMILIS; SOURCE 12 ORGANISM_TAXID: 119602; SOURCE 13 STRAIN: SUBSP. EQUISIMILIS; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET11 KEYWDS PLASMINOGEN, STREPTOKINASE, PROTEIN COMPLEX, HYDROLASE-BLOOD CLOTTING KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.WAKEHAM,S.TERZYAN,P.ZHAI,J.A.LOY,J.TANG,X.C.ZHANG REVDAT 4 16-AUG-23 1L4Z 1 REMARK REVDAT 3 27-OCT-21 1L4Z 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1L4Z 1 VERSN REVDAT 1 11-DEC-02 1L4Z 0 JRNL AUTH N.WAKEHAM,S.TERZYAN,P.ZHAI,J.A.LOY,J.TANG,X.C.ZHANG JRNL TITL EFFECTS OF DELETION OF STREPTOKINASE RESIDUES 48-59 ON JRNL TITL 2 PLASMINOGEN ACTIVATION. JRNL REF PROTEIN ENG. V. 15 753 2002 JRNL REFN ISSN 0269-2139 JRNL PMID 12456874 JRNL DOI 10.1093/PROTEIN/15.9.753 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 13960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 967 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.35500 REMARK 3 B22 (A**2) : 8.35500 REMARK 3 B33 (A**2) : -16.71000 REMARK 3 B12 (A**2) : -4.07900 REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 41.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17131 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 24.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DDJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA ACETATE, CADMIUM SULFATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.96667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.45000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.48333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 112.41667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.93333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 44.96667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.48333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.45000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 112.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE MOLECULE OF MICROPLASMINOGEN AND ONE MOLECULE OF REMARK 300 STREPTOKINASE N TERMINAL ALPHA DOMAIN IN ASSYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 59.20000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 102.53741 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.48333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 58 REMARK 465 ALA B 59 REMARK 465 SER B 60 REMARK 465 LYS B 61 REMARK 465 PRO B 62 REMARK 465 PHE B 63 REMARK 465 ALA B 64 REMARK 465 THR B 65 REMARK 465 ASP B 66 REMARK 465 SER B 67 REMARK 465 GLY B 68 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 554 CG REMARK 480 ARG A 637 CD REMARK 480 ARG B 45 NE CZ NH1 NH2 REMARK 480 LYS B 73 CG REMARK 480 SER B 93 OG REMARK 480 ASN B 94 CG OD1 ND2 REMARK 480 SER B 105 OG REMARK 480 LYS B 121 CD CE REMARK 480 GLN B 130 CG OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 545 63.01 -101.48 REMARK 500 PHE A 546 91.97 91.75 REMARK 500 CYS A 558 128.66 -37.69 REMARK 500 PHE A 587 -11.75 -143.90 REMARK 500 PRO A 595 -28.11 -38.80 REMARK 500 HIS A 621 -35.75 -132.88 REMARK 500 VAL A 624 -69.36 -96.93 REMARK 500 PRO A 655 177.71 -58.11 REMARK 500 THR A 659 -168.56 -121.06 REMARK 500 ASN A 671 16.41 59.68 REMARK 500 ARG A 677 -10.39 77.05 REMARK 500 PHE A 715 -104.95 -105.06 REMARK 500 LYS A 750 -55.59 66.44 REMARK 500 ASP A 751 9.34 -160.22 REMARK 500 VAL A 777 -39.37 -38.89 REMARK 500 THR B 43 93.32 -165.96 REMARK 500 SER B 44 -109.52 159.19 REMARK 500 ASP B 102 166.91 172.27 REMARK 500 GLN B 133 -178.02 -172.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 105 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 2 O REMARK 620 2 HOH A 6 O 61.1 REMARK 620 3 CD A 106 CD 154.3 124.0 REMARK 620 4 GLU A 606 OE2 68.1 68.4 89.8 REMARK 620 5 ASP A 646 OD2 92.0 70.2 113.6 138.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 104 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 50 O REMARK 620 2 HOH A 60 O 65.8 REMARK 620 3 HIS A 571 NE2 74.1 98.7 REMARK 620 4 GLU A 627 OE1 130.9 155.8 103.0 REMARK 620 5 GLU A 627 OE2 174.1 111.4 101.7 53.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 103 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 68 O REMARK 620 2 HIS A 569 NE2 68.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 106 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 603 NE2 REMARK 620 2 GLU A 606 OE1 73.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 32 OD1 REMARK 620 2 ASP B 32 OD2 53.2 REMARK 620 3 HIS B 140 NE2 80.9 114.4 REMARK 620 4 HOH B 203 O 152.6 127.2 115.1 REMARK 620 5 HOH B 204 O 108.6 70.5 87.0 95.0 REMARK 620 6 HOH B 205 O 69.2 99.8 104.3 84.8 167.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MICROPLASMINOGEN-STREPTOKINASE ALPHA DOMAIN REMARK 900 COMPLEX REMARK 900 RELATED ID: 1BML RELATED DB: PDB REMARK 900 COMPLEX OF THE CATALYTIC DOMAIN OF HUMAN PLASMIN AND STREPTOKINASE REMARK 900 RELATED ID: 1DDJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PLASMINOGEN CATALYTIC DOMAIN REMARK 900 RELATED ID: 1QRZ RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF PLASMINOGEN REMARK 900 RELATED ID: 1BUI RELATED DB: PDB REMARK 900 STRUCTURE OF THE TERNARY MICROPLASMIN-STAPHYLOKINASE-MICROPLASMIN REMARK 900 COMPLEX: A PROTEINASE-COFACTOR-SUBSTRATE COMPLEX IN ACTION DBREF 1L4Z A 544 791 UNP P00747 PLMN_HUMAN 563 810 DBREF 1L4Z B 1 147 UNP P00779 STRP_STREQ 1 147 SEQADV 1L4Z ALA A 741 UNP P00747 SER 760 ENGINEERED MUTATION SEQADV 1L4Z MET B 0 UNP P00779 INITIATING METHIONINE SEQADV 1L4Z ALA B 6 UNP P00779 TRP 6 ENGINEERED MUTATION SEQADV 1L4Z B UNP P00779 HIS 48 DELETION SEQADV 1L4Z B UNP P00779 GLY 49 DELETION SEQADV 1L4Z B UNP P00779 GLY 50 DELETION SEQADV 1L4Z B UNP P00779 LYS 51 DELETION SEQADV 1L4Z B UNP P00779 THR 52 DELETION SEQADV 1L4Z B UNP P00779 GLU 53 DELETION SEQADV 1L4Z B UNP P00779 GLN 54 DELETION SEQADV 1L4Z B UNP P00779 GLY 55 DELETION SEQADV 1L4Z B UNP P00779 LEU 56 DELETION SEQADV 1L4Z B UNP P00779 SER 57 DELETION SEQADV 1L4Z B UNP P00779 PRO 58 DELETION SEQADV 1L4Z B UNP P00779 LYS 59 DELETION SEQRES 1 A 248 PRO SER PHE ASP CYS GLY LYS PRO GLN VAL GLU PRO LYS SEQRES 2 A 248 LYS CYS PRO GLY ARG VAL VAL GLY GLY CYS VAL ALA HIS SEQRES 3 A 248 PRO HIS SER TRP PRO TRP GLN VAL SER LEU ARG THR ARG SEQRES 4 A 248 PHE GLY MET HIS PHE CYS GLY GLY THR LEU ILE SER PRO SEQRES 5 A 248 GLU TRP VAL LEU THR ALA ALA HIS CYS LEU GLU LYS SER SEQRES 6 A 248 PRO ARG PRO SER SER TYR LYS VAL ILE LEU GLY ALA HIS SEQRES 7 A 248 GLN GLU VAL ASN LEU GLU PRO HIS VAL GLN GLU ILE GLU SEQRES 8 A 248 VAL SER ARG LEU PHE LEU GLU PRO THR ARG LYS ASP ILE SEQRES 9 A 248 ALA LEU LEU LYS LEU SER SER PRO ALA VAL ILE THR ASP SEQRES 10 A 248 LYS VAL ILE PRO ALA CYS LEU PRO SER PRO ASN TYR VAL SEQRES 11 A 248 VAL ALA ASP ARG THR GLU CYS PHE ILE THR GLY TRP GLY SEQRES 12 A 248 GLU THR GLN GLY THR PHE GLY ALA GLY LEU LEU LYS GLU SEQRES 13 A 248 ALA GLN LEU PRO VAL ILE GLU ASN LYS VAL CYS ASN ARG SEQRES 14 A 248 TYR GLU PHE LEU ASN GLY ARG VAL GLN SER THR GLU LEU SEQRES 15 A 248 CYS ALA GLY HIS LEU ALA GLY GLY THR ASP SER CYS GLN SEQRES 16 A 248 GLY ASP ALA GLY GLY PRO LEU VAL CYS PHE GLU LYS ASP SEQRES 17 A 248 LYS TYR ILE LEU GLN GLY VAL THR SER TRP GLY LEU GLY SEQRES 18 A 248 CYS ALA ARG PRO ASN LYS PRO GLY VAL TYR VAL ARG VAL SEQRES 19 A 248 SER ARG PHE VAL THR TRP ILE GLU GLY VAL MET ARG ASN SEQRES 20 A 248 ASN SEQRES 1 B 136 MET ILE ALA GLY PRO GLU ALA LEU LEU ASP ARG PRO SER SEQRES 2 B 136 VAL ASN ASN SER GLN LEU VAL VAL SER VAL ALA GLY THR SEQRES 3 B 136 VAL GLU GLY THR ASN GLN ASP ILE SER LEU LYS PHE PHE SEQRES 4 B 136 GLU ILE ASP LEU THR SER ARG PRO ALA SER LYS PRO PHE SEQRES 5 B 136 ALA THR ASP SER GLY ALA MET PRO HIS LYS LEU GLU LYS SEQRES 6 B 136 ALA ASP LEU LEU LYS ALA ILE GLN GLU GLN LEU ILE ALA SEQRES 7 B 136 ASN VAL HIS SER ASN ASP ASP TYR PHE GLU VAL ILE ASP SEQRES 8 B 136 PHE ALA SER ASP ALA THR ILE THR ASP ARG ASN GLY LYS SEQRES 9 B 136 VAL TYR PHE ALA ASP LYS ASP GLY SER VAL THR LEU PRO SEQRES 10 B 136 THR GLN PRO VAL GLN GLU PHE LEU LEU SER GLY HIS VAL SEQRES 11 B 136 ARG VAL ARG PRO TYR LYS HET CD A 103 1 HET CD A 104 1 HET CD A 105 1 HET CD A 106 1 HET CD B 201 1 HET CD B 202 1 HETNAM CD CADMIUM ION FORMUL 3 CD 6(CD 2+) FORMUL 9 HOH *70(H2 O) HELIX 1 1 HIS A 603 GLU A 606 5 4 HELIX 2 2 ARG A 610 SER A 612 5 3 HELIX 3 3 GLU A 706 ASN A 711 1 6 HELIX 4 4 PHE A 780 ASN A 790 1 11 HELIX 5 5 ALA B 6 ARG B 10 5 5 HELIX 6 6 LYS B 76 ALA B 89 1 14 SHEET 1 A 8 CYS A 566 VAL A 567 0 SHEET 2 A 8 LYS A 698 ILE A 705 -1 N GLU A 699 O CYS A 566 SHEET 3 A 8 GLU A 679 GLY A 684 -1 N CYS A 680 O LEU A 702 SHEET 4 A 8 PRO A 744 GLU A 749 -1 O PRO A 744 N THR A 683 SHEET 5 A 8 LYS A 752 THR A 759 -1 O LYS A 752 N GLU A 749 SHEET 6 A 8 GLY A 772 ARG A 776 -1 N VAL A 775 O VAL A 758 SHEET 7 A 8 GLU A 724 ALA A 727 -1 N LEU A 725 O TYR A 774 SHEET 8 A 8 LYS A 698 ILE A 705 -1 N ILE A 705 O CYS A 726 SHEET 1 B 7 GLN A 631 LEU A 640 0 SHEET 2 B 7 TYR A 614 LEU A 618 -1 O TYR A 614 N VAL A 635 SHEET 3 B 7 GLN A 576 THR A 581 -1 O SER A 578 N ILE A 617 SHEET 4 B 7 HIS A 586 SER A 594 -1 N PHE A 587 O LEU A 579 SHEET 5 B 7 TRP A 597 ALA A 601 -1 O TRP A 597 N ILE A 593 SHEET 6 B 7 ILE A 647 LEU A 652 -1 O ALA A 648 N THR A 600 SHEET 7 B 7 GLN A 631 LEU A 640 -1 N SER A 636 O LYS A 651 SHEET 1 C 9 ASP B 32 SER B 34 0 SHEET 2 C 9 GLN B 17 VAL B 26 -1 N GLY B 24 O ILE B 33 SHEET 3 C 9 PHE B 38 ASP B 41 -1 O PHE B 38 N VAL B 20 SHEET 4 C 9 GLN B 17 VAL B 26 -1 N LEU B 18 O ILE B 40 SHEET 5 C 9 GLU B 134 PRO B 145 1 O PHE B 135 N VAL B 19 SHEET 6 C 9 PHE B 98 PHE B 103 -1 N GLU B 99 O ARG B 144 SHEET 7 C 9 GLU B 134 PRO B 145 -1 O ARG B 142 N ILE B 101 SHEET 8 C 9 THR B 108 THR B 110 -1 O THR B 108 N SER B 138 SHEET 9 C 9 VAL B 116 TYR B 117 -1 N TYR B 117 O ILE B 109 SHEET 1 D 2 LYS B 73 GLU B 75 0 SHEET 2 D 2 SER B 124 THR B 126 -1 O VAL B 125 N LEU B 74 SSBOND 1 CYS A 548 CYS A 666 1555 1555 2.05 SSBOND 2 CYS A 558 CYS A 566 1555 1555 2.03 SSBOND 3 CYS A 588 CYS A 604 1555 1555 2.03 SSBOND 4 CYS A 680 CYS A 747 1555 1555 2.04 SSBOND 5 CYS A 710 CYS A 726 1555 1555 2.02 SSBOND 6 CYS A 737 CYS A 765 1555 1555 2.03 LINK O HOH A 2 CD CD A 105 1555 1555 2.64 LINK O HOH A 6 CD CD A 105 1555 1555 2.85 LINK O HOH A 50 CD CD A 104 1555 1555 2.64 LINK O HOH A 60 CD CD A 104 1555 1555 2.45 LINK O HOH A 68 CD CD A 103 1555 1555 2.50 LINK CD CD A 103 NE2 HIS A 569 1555 1555 2.54 LINK CD CD A 104 NE2 HIS A 571 1555 1555 2.55 LINK CD CD A 104 OE1 GLU A 627 1555 1555 2.31 LINK CD CD A 104 OE2 GLU A 627 1555 1555 2.53 LINK CD CD A 105 CD CD A 106 1555 1555 2.45 LINK CD CD A 105 OE2 GLU A 606 1555 1555 2.75 LINK CD CD A 105 OD2 ASP A 646 1555 10665 3.02 LINK CD CD A 106 NE2 HIS A 603 1555 1555 2.84 LINK CD CD A 106 OE1 GLU A 606 1555 1555 2.48 LINK OG SER B 21 CD CD B 202 1555 1555 2.50 LINK OD1 ASP B 32 CD CD B 201 1555 1555 2.63 LINK OD2 ASP B 32 CD CD B 201 1555 1555 2.15 LINK NE2 HIS B 140 CD CD B 201 1555 1555 2.28 LINK CD CD B 201 O HOH B 203 1555 1555 2.46 LINK CD CD B 201 O HOH B 204 1555 1555 2.54 LINK CD CD B 201 O HOH B 205 1555 1555 2.35 CISPEP 1 GLN B 130 PRO B 131 0 0.94 SITE 1 AC1 5 ASP B 32 HIS B 140 HOH B 203 HOH B 204 SITE 2 AC1 5 HOH B 205 SITE 1 AC2 1 SER B 21 SITE 1 AC3 2 HOH A 68 HIS A 569 SITE 1 AC4 4 HOH A 50 HOH A 60 HIS A 571 GLU A 627 SITE 1 AC5 6 HOH A 2 HOH A 6 CD A 106 HIS A 603 SITE 2 AC5 6 GLU A 606 ASP A 646 SITE 1 AC6 4 CD A 105 HIS A 603 GLU A 606 GLU A 724 CRYST1 118.400 118.400 134.900 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008446 0.004876 0.000000 0.00000 SCALE2 0.000000 0.009753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007413 0.00000