PDB Short entry for 1LB2 HEADER GENE REGULATION/DNA 01-APR-02 1LB2 TITLE STRUCTURE OF THE E. COLI ALPHA C-TERMINAL DOMAIN OF RNA POLYMERASE IN TITLE 2 COMPLEX WITH CAP AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*TP*TP*TP*TP*TP*TP*CP*CP*TP*AP*AP*AP*AP*TP*GP*TP*GP COMPND 3 *AP*T)-3'; COMPND 4 CHAIN: K; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*AP*GP*GP*AP COMPND 8 *AP*AP*AP*AP*AP*G)-3'; COMPND 9 CHAIN: J; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CATABOLITE GENE ACTIVATOR PROTEIN; COMPND 13 CHAIN: A; COMPND 14 SYNONYM: CAP, CAMP RECEPTOR PROTEIN, CAMP-REGULATORY PROTEIN; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN; COMPND 18 CHAIN: B, E; COMPND 19 FRAGMENT: ALPHA CTD, ALPHA CARBOXY TERMINAL DOMAIN; COMPND 20 SYNONYM: TRANSCRIPTASE ALPHA CHAIN, RNA POLYMERASE ALPHA SUBUNIT; COMPND 21 EC: 2.7.7.6; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, GENE-REGULATORY, GENE REGULATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.BENOFF,H.YANG,C.L.LAWSON,G.PARKINSON,J.LIU,E.BLATTER,Y.W.EBRIGHT, AUTHOR 2 H.M.BERMAN,R.H.EBRIGHT REVDAT 4 16-AUG-23 1LB2 1 REMARK REVDAT 3 24-FEB-09 1LB2 1 VERSN REVDAT 2 25-OCT-05 1LB2 1 AUTHOR JRNL REVDAT 1 06-SEP-02 1LB2 0 JRNL AUTH B.BENOFF,H.YANG,C.L.LAWSON,G.PARKINSON,J.LIU,E.BLATTER, JRNL AUTH 2 Y.W.EBRIGHT,H.M.BERMAN,R.H.EBRIGHT JRNL TITL STRUCTURAL BASIS OF TRANSCRIPTION ACTIVATION: THE CAP-ALPHA JRNL TITL 2 CTD-DNA COMPLEX. JRNL REF SCIENCE V. 297 1562 2002 JRNL REFN ISSN 0036-8075 JRNL PMID 12202833 JRNL DOI 10.1126/SCIENCE.1076376 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 23331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2304 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1705 REMARK 3 BIN R VALUE (WORKING SET) : 0.4480 REMARK 3 BIN FREE R VALUE : 0.4750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 182 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2663 REMARK 3 NUCLEIC ACID ATOMS : 896 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 104.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.45000 REMARK 3 B22 (A**2) : 16.45000 REMARK 3 B33 (A**2) : -32.90000 REMARK 3 B12 (A**2) : 17.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM SIGMAA (A) : 0.79 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.83 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 47.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CMP.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA_REP.TOP REMARK 3 TOPOLOGY FILE 3 : CMP.TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23331 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 15.30 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 38.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT AND REMARK 200 FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2CGP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, NAACETATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.34667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.67333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.34667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.67333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.34667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.67333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 105.34667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.67333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, J, A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 LYS B 246 REMARK 465 PRO B 247 REMARK 465 GLU B 248 REMARK 465 PHE B 249 REMARK 465 PRO B 322 REMARK 465 PRO B 323 REMARK 465 ALA B 324 REMARK 465 SER B 325 REMARK 465 ILE B 326 REMARK 465 ALA B 327 REMARK 465 ASP B 328 REMARK 465 GLU B 329 REMARK 465 LYS E 246 REMARK 465 PRO E 247 REMARK 465 GLU E 248 REMARK 465 PHE E 249 REMARK 465 MET E 316 REMARK 465 ARG E 317 REMARK 465 LEU E 318 REMARK 465 GLU E 319 REMARK 465 ASN E 320 REMARK 465 TRP E 321 REMARK 465 PRO E 322 REMARK 465 PRO E 323 REMARK 465 ALA E 324 REMARK 465 SER E 325 REMARK 465 ILE E 326 REMARK 465 ALA E 327 REMARK 465 ASP E 328 REMARK 465 GLU E 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 -5.33 82.69 REMARK 500 ASN A 65 -168.58 -106.90 REMARK 500 LYS A 100 -71.58 -52.42 REMARK 500 ASN A 109 104.71 -163.92 REMARK 500 GLN A 153 156.51 -35.25 REMARK 500 ASP A 155 0.73 -57.53 REMARK 500 ILE A 167 139.62 -172.00 REMARK 500 GLN A 193 9.54 -58.05 REMARK 500 ASN A 194 74.82 38.71 REMARK 500 LEU B 253 -5.23 -55.94 REMARK 500 VAL B 264 -70.83 -49.30 REMARK 500 ALA B 267 -72.71 -44.58 REMARK 500 HIS B 276 -65.50 -107.82 REMARK 500 GLN B 283 64.41 -103.65 REMARK 500 ARG B 310 6.96 -66.53 REMARK 500 LEU B 318 134.63 -177.01 REMARK 500 ASN B 320 99.38 71.64 REMARK 500 GLU E 261 115.42 51.75 REMARK 500 LEU E 262 -96.02 -130.35 REMARK 500 ALA E 267 -72.76 -54.40 REMARK 500 ILE E 278 -5.84 -52.32 REMARK 500 LEU E 281 -76.60 -62.06 REMARK 500 VAL E 282 -17.03 -44.42 REMARK 500 GLU E 286 -70.57 -47.35 REMARK 500 VAL E 287 -35.46 -38.58 REMARK 500 SER E 299 -71.36 -54.85 REMARK 500 SER E 313 -166.62 -106.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC K 33 0.07 SIDE CHAIN REMARK 500 DA K 20 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 679 DBREF 1LB2 A 1 209 UNP P0ACJ8 CRP_ECOLI 2 210 DBREF 1LB2 B 246 329 UNP P0A7Z4 RPOA_ECOLI 246 329 DBREF 1LB2 E 246 329 UNP P0A7Z4 RPOA_ECOLI 246 329 DBREF 1LB2 K 33 14 PDB 1LB2 1LB2 33 14 DBREF 1LB2 J 10 33 PDB 1LB2 1LB2 10 33 SEQRES 1 K 20 DC DT DT DT DT DT DT DC DC DT DA DA DA SEQRES 2 K 20 DA DT DG DT DG DA DT SEQRES 1 J 24 DC DT DA DG DA DT DC DA DC DA DT DT DT SEQRES 2 J 24 DT DA DG DG DA DA DA DA DA DA DG SEQRES 1 A 209 VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU TRP SEQRES 2 A 209 PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER LYS SEQRES 3 A 209 SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR LEU SEQRES 4 A 209 TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE LYS SEQRES 5 A 209 ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU ASN SEQRES 6 A 209 GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU GLU SEQRES 7 A 209 GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR ALA SEQRES 8 A 209 CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG GLN SEQRES 9 A 209 LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SER SEQRES 10 A 209 ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU LYS SEQRES 11 A 209 VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG ILE SEQRES 12 A 209 ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP ALA SEQRES 13 A 209 MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR ARG SEQRES 14 A 209 GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU THR SEQRES 15 A 209 VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN LEU SEQRES 16 A 209 ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY THR SEQRES 17 A 209 ARG SEQRES 1 B 84 LYS PRO GLU PHE ASP PRO ILE LEU LEU ARG PRO VAL ASP SEQRES 2 B 84 ASP LEU GLU LEU THR VAL ARG SER ALA ASN CYS LEU LYS SEQRES 3 B 84 ALA GLU ALA ILE HIS TYR ILE GLY ASP LEU VAL GLN ARG SEQRES 4 B 84 THR GLU VAL GLU LEU LEU LYS THR PRO ASN LEU GLY LYS SEQRES 5 B 84 LYS SER LEU THR GLU ILE LYS ASP VAL LEU ALA SER ARG SEQRES 6 B 84 GLY LEU SER LEU GLY MET ARG LEU GLU ASN TRP PRO PRO SEQRES 7 B 84 ALA SER ILE ALA ASP GLU SEQRES 1 E 84 LYS PRO GLU PHE ASP PRO ILE LEU LEU ARG PRO VAL ASP SEQRES 2 E 84 ASP LEU GLU LEU THR VAL ARG SER ALA ASN CYS LEU LYS SEQRES 3 E 84 ALA GLU ALA ILE HIS TYR ILE GLY ASP LEU VAL GLN ARG SEQRES 4 E 84 THR GLU VAL GLU LEU LEU LYS THR PRO ASN LEU GLY LYS SEQRES 5 E 84 LYS SER LEU THR GLU ILE LYS ASP VAL LEU ALA SER ARG SEQRES 6 E 84 GLY LEU SER LEU GLY MET ARG LEU GLU ASN TRP PRO PRO SEQRES 7 E 84 ALA SER ILE ALA ASP GLU HET CMP A 679 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 6 CMP C10 H12 N5 O6 P FORMUL 7 HOH *32(H2 O) HELIX 1 1 PRO A 9 SER A 16 1 8 HELIX 2 2 GLU A 72 PHE A 76 5 5 HELIX 3 3 TYR A 99 ASN A 109 1 11 HELIX 4 4 PRO A 110 LEU A 137 1 28 HELIX 5 5 ASP A 138 GLN A 153 1 16 HELIX 6 6 THR A 168 GLY A 177 1 10 HELIX 7 7 SER A 179 GLN A 193 1 15 HELIX 8 8 PRO B 256 GLU B 261 5 6 HELIX 9 9 THR B 263 GLU B 273 1 11 HELIX 10 10 TYR B 277 GLN B 283 1 7 HELIX 11 11 THR B 285 THR B 292 1 8 HELIX 12 12 GLY B 296 ARG B 310 1 15 HELIX 13 13 PRO E 251 ARG E 255 5 5 HELIX 14 14 PRO E 256 GLU E 261 5 6 HELIX 15 15 THR E 263 ALA E 272 1 10 HELIX 16 16 TYR E 277 GLN E 283 1 7 HELIX 17 17 THR E 285 LYS E 291 1 7 HELIX 18 18 GLY E 296 ARG E 310 1 15 SHEET 1 A 4 HIS A 19 TYR A 23 0 SHEET 2 A 4 CYS A 92 SER A 98 -1 O GLU A 96 N HIS A 19 SHEET 3 A 4 THR A 38 LYS A 44 -1 N TYR A 41 O ALA A 95 SHEET 4 A 4 PHE A 69 ILE A 70 -1 O ILE A 70 N TYR A 40 SHEET 1 B 4 THR A 28 ILE A 30 0 SHEET 2 B 4 TRP A 85 ALA A 88 -1 O VAL A 86 N ILE A 30 SHEET 3 B 4 VAL A 47 LYS A 52 -1 N ALA A 48 O ARG A 87 SHEET 4 B 4 GLU A 58 LEU A 64 -1 O SER A 62 N VAL A 49 SHEET 1 C 4 MET A 157 HIS A 159 0 SHEET 2 C 4 GLY A 162 LYS A 166 -1 O GLY A 162 N HIS A 159 SHEET 3 C 4 THR A 202 TYR A 206 -1 O ILE A 203 N ILE A 165 SHEET 4 C 4 ILE A 196 HIS A 199 -1 N HIS A 199 O THR A 202 SITE 1 AC1 13 ILE A 30 VAL A 49 LEU A 61 ILE A 70 SITE 2 AC1 13 GLY A 71 GLU A 72 LEU A 73 ARG A 82 SITE 3 AC1 13 SER A 83 ALA A 84 TYR A 99 THR A 127 SITE 4 AC1 13 SER A 128 CRYST1 175.970 175.970 158.020 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005683 0.003281 0.000000 0.00000 SCALE2 0.000000 0.006562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006328 0.00000