PDB Short entry for 1LEI HEADER TRANSCRIPTION/DNA 09-APR-02 1LEI TITLE THE KB DNA SEQUENCE FROM THE HLV-LTR FUNCTIONS AS AN ALLOSTERIC TITLE 2 REGULATOR OF HIV TRANSCRIPTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)- COMPND 3 3'; COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: KB DNA; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP* COMPND 9 AP*G)-3'; COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: KB DNA; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT; COMPND 15 CHAIN: A; COMPND 16 FRAGMENT: P65 RHR; COMPND 17 SYNONYM: NF-KB P65; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT; COMPND 21 CHAIN: B; COMPND 22 FRAGMENT: P50 RHR; COMPND 23 SYNONYM: NF-KB P50; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 GENE: RELA; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: ET29B; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 GENE: NFKB1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: ET29B KEYWDS TRANSCRIPTION FACTOR, NF-KB-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.CHEN-PARK,D.B.HUANG,G.GHOSH REVDAT 4 20-SEP-23 1LEI 1 REMARK REVDAT 3 21-DEC-22 1LEI 1 SEQADV LINK REVDAT 2 24-FEB-09 1LEI 1 VERSN REVDAT 1 15-APR-03 1LEI 0 JRNL AUTH F.E.CHEN-PARK,D.B.HUANG,B.NORO,D.THANOS,G.GHOSH JRNL TITL THE KB DNA SEQUENCE FROM THE HIV LONG TERMINAL REPEAT JRNL TITL 2 FUNCTIONS AS AN ALLOSTERIC REGULATOR OF HIV TRANSCRIPTION JRNL REF J.BIOL.CHEM. V. 277 24701 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11970949 JRNL DOI 10.1074/JBC.M200007200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 29985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4630 REMARK 3 NUCLEIC ACID ATOMS : 691 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.330 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, CACL2, SODIUM SPERMINE, PH REMARK 280 6.5, SMALL TUBES, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.56550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.84850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.56550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.84850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.56550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.84850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.56550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.84850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 MET B 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 DT D 1 O4 DT D 1 6555 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 PRO A 81 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO A 82 C - N - CA ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 25 93.17 -163.27 REMARK 500 ALA A 43 -165.73 -72.80 REMARK 500 ILE A 46 109.57 -50.90 REMARK 500 GLU A 49 -24.08 -166.82 REMARK 500 THR A 67 117.87 -171.46 REMARK 500 PRO A 81 -62.24 -13.65 REMARK 500 HIS A 83 84.95 -59.69 REMARK 500 ASN A 115 50.16 -151.25 REMARK 500 GLN A 135 -16.24 -48.12 REMARK 500 ASN A 139 76.58 -150.53 REMARK 500 GLN A 148 25.33 -76.69 REMARK 500 ASP A 151 148.07 -37.17 REMARK 500 VAL A 165 -147.30 -108.19 REMARK 500 ALA A 169 1.82 -65.43 REMARK 500 ASP A 223 56.19 -148.43 REMARK 500 PHE A 239 163.71 179.80 REMARK 500 ARG A 246 47.29 39.98 REMARK 500 GLN A 247 -7.93 61.69 REMARK 500 SER A 261 55.76 -141.94 REMARK 500 ALA A 264 143.93 176.67 REMARK 500 ARG A 278 34.84 39.24 REMARK 500 GLU B 46 84.18 -155.10 REMARK 500 SER B 63 91.89 39.61 REMARK 500 LEU B 67 114.72 -24.05 REMARK 500 SER B 72 40.58 -109.86 REMARK 500 GLU B 73 -35.97 -32.91 REMARK 500 LYS B 74 -154.51 -134.83 REMARK 500 ASN B 75 35.83 -79.15 REMARK 500 LYS B 77 72.48 20.52 REMARK 500 SER B 78 -169.28 -66.19 REMARK 500 TYR B 79 148.51 174.95 REMARK 500 TYR B 87 87.84 -30.74 REMARK 500 LYS B 114 -153.51 18.33 REMARK 500 PRO B 127 -168.52 -40.10 REMARK 500 PHE B 134 81.26 -150.51 REMARK 500 ASN B 136 107.32 57.02 REMARK 500 LEU B 137 90.27 -179.10 REMARK 500 GLU B 149 -71.11 -58.17 REMARK 500 TYR B 163 -15.72 -38.02 REMARK 500 PRO B 165 -158.97 -58.81 REMARK 500 HIS B 170 124.61 165.33 REMARK 500 ASP B 172 11.68 -59.96 REMARK 500 TYR B 175 60.29 -69.71 REMARK 500 LEU B 176 2.73 -159.79 REMARK 500 GLN B 177 161.22 -42.35 REMARK 500 ALA B 178 109.79 -25.82 REMARK 500 GLU B 179 105.77 -162.89 REMARK 500 ASP B 220 -145.75 -100.34 REMARK 500 PHE B 225 77.35 -55.12 REMARK 500 GLU B 230 119.41 -39.37 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VKX RELATED DB: PDB REMARK 900 1VKX CONTAINS THE SAME PROTEIN COMPLEXED WITH A KB DNA DBREF 1LEI A 20 291 UNP Q04207 TF65_MOUSE 20 291 DBREF 1LEI B 39 350 UNP P25799 KBF1_MOUSE 39 350 DBREF 1LEI C 1 17 PDB 1LEI 1LEI 1 17 DBREF 1LEI D 1 17 PDB 1LEI 1LEI 1 17 SEQADV 1LEI MET A 18 UNP Q04207 CLONING ARTIFACT SEQADV 1LEI ALA A 19 UNP Q04207 CLONING ARTIFACT SEQADV 1LEI MET B 38 UNP P25799 INITIATING METHIONINE SEQRES 1 C 17 DC DT DC DA DG DG DG DA DA DA DG DT DA SEQRES 2 C 17 DC DA DG DA SEQRES 1 D 17 DT DC DT DG 5IU DA DC 5IU 5IU 5IU DC DC DC SEQRES 2 D 17 DT DG DA DG SEQRES 1 A 274 MET ALA TYR VAL GLU ILE ILE GLU GLN PRO LYS GLN ARG SEQRES 2 A 274 GLY MET ARG PHE ARG TYR LYS CYS GLU GLY ARG SER ALA SEQRES 3 A 274 GLY SER ILE PRO GLY GLU ARG SER THR ASP THR THR LYS SEQRES 4 A 274 THR HIS PRO THR ILE LYS ILE ASN GLY TYR THR GLY PRO SEQRES 5 A 274 GLY THR VAL ARG ILE SER LEU VAL THR LYS ASP PRO PRO SEQRES 6 A 274 HIS ARG PRO HIS PRO HIS GLU LEU VAL GLY LYS ASP CYS SEQRES 7 A 274 ARG ASP GLY TYR TYR GLU ALA ASP LEU CYS PRO ASP ARG SEQRES 8 A 274 SER ILE HIS SER PHE GLN ASN LEU GLY ILE GLN CYS VAL SEQRES 9 A 274 LYS LYS ARG ASP LEU GLU GLN ALA ILE SER GLN ARG ILE SEQRES 10 A 274 GLN THR ASN ASN ASN PRO PHE HIS VAL PRO ILE GLU GLU SEQRES 11 A 274 GLN ARG GLY ASP TYR ASP LEU ASN ALA VAL ARG LEU CYS SEQRES 12 A 274 PHE GLN VAL THR VAL ARG ASP PRO ALA GLY ARG PRO LEU SEQRES 13 A 274 LEU LEU THR PRO VAL LEU SER HIS PRO ILE PHE ASP ASN SEQRES 14 A 274 ARG ALA PRO ASN THR ALA GLU LEU LYS ILE CYS ARG VAL SEQRES 15 A 274 ASN ARG ASN SER GLY SER CYS LEU GLY GLY ASP GLU ILE SEQRES 16 A 274 PHE LEU LEU CYS ASP LYS VAL GLN LYS GLU ASP ILE GLU SEQRES 17 A 274 VAL TYR PHE THR GLY PRO GLY TRP GLU ALA ARG GLY SER SEQRES 18 A 274 PHE SER GLN ALA ASP VAL HIS ARG GLN VAL ALA ILE VAL SEQRES 19 A 274 PHE ARG THR PRO PRO TYR ALA ASP PRO SER LEU GLN ALA SEQRES 20 A 274 PRO VAL ARG VAL SER MET GLN LEU ARG ARG PRO SER ASP SEQRES 21 A 274 ARG GLU LEU SER GLU PRO MET GLU PHE GLN TYR LEU PRO SEQRES 22 A 274 ASP SEQRES 1 B 313 MET GLY PRO TYR LEU GLN ILE LEU GLU GLN PRO LYS GLN SEQRES 2 B 313 ARG GLY PHE ARG PHE ARG TYR VAL CYS GLU GLY PRO SER SEQRES 3 B 313 HIS GLY GLY LEU PRO GLY ALA SER SER GLU LYS ASN LYS SEQRES 4 B 313 LYS SER TYR PRO GLN VAL LYS ILE CYS ASN TYR VAL GLY SEQRES 5 B 313 PRO ALA LYS VAL ILE VAL GLN LEU VAL THR ASN GLY LYS SEQRES 6 B 313 ASN ILE HIS LEU HIS ALA HIS SER LEU VAL GLY LYS HIS SEQRES 7 B 313 CYS GLU ASP GLY VAL CYS THR VAL THR ALA GLY PRO LYS SEQRES 8 B 313 ASP MET VAL VAL GLY PHE ALA ASN LEU GLY ILE LEU HIS SEQRES 9 B 313 VAL THR LYS LYS LYS VAL PHE GLU THR LEU GLU ALA ARG SEQRES 10 B 313 MET THR GLU ALA CYS ILE ARG GLY TYR ASN PRO GLY LEU SEQRES 11 B 313 LEU VAL HIS SER ASP LEU ALA TYR LEU GLN ALA GLU GLY SEQRES 12 B 313 GLY GLY ASP ARG GLN LEU THR ASP ARG GLU LYS GLU ILE SEQRES 13 B 313 ILE ARG GLN ALA ALA VAL GLN GLN THR LYS GLU MET ASP SEQRES 14 B 313 LEU SER VAL VAL ARG LEU MET PHE THR ALA PHE LEU PRO SEQRES 15 B 313 ASP SER THR GLY SER PHE THR ARG ARG LEU GLU PRO VAL SEQRES 16 B 313 VAL SER ASP ALA ILE TYR ASP SER LYS ALA PRO ASN ALA SEQRES 17 B 313 SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA GLY SEQRES 18 B 313 CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS ASP SEQRES 19 B 313 LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR GLU SEQRES 20 B 313 GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY ASP SEQRES 21 B 313 PHE SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE VAL SEQRES 22 B 313 PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR LYS SEQRES 23 B 313 PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER ASP SEQRES 24 B 313 LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR PRO SEQRES 25 B 313 GLU MODRES 1LEI 5IU D 5 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 1LEI 5IU D 8 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 1LEI 5IU D 9 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 1LEI 5IU D 10 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HET 5IU D 5 20 HET 5IU D 8 20 HET 5IU D 9 20 HET 5IU D 10 20 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE FORMUL 2 5IU 4(C9 H12 I N2 O8 P) FORMUL 5 HOH *23(H2 O) HELIX 1 1 LYS A 122 ARG A 124 5 3 HELIX 2 2 ASP A 125 GLN A 135 1 11 HELIX 3 3 PRO A 144 GLN A 148 5 5 HELIX 4 4 GLN A 220 ILE A 224 5 5 HELIX 5 5 SER A 240 ALA A 242 5 3 HELIX 6 6 LYS B 145 GLU B 157 1 13 HELIX 7 7 HIS B 170 ALA B 174 5 5 HELIX 8 8 ARG B 189 LYS B 203 1 15 HELIX 9 9 SER B 299 THR B 301 5 3 SHEET 1 A 3 TYR A 20 GLU A 25 0 SHEET 2 A 3 THR A 60 ASN A 64 -1 O LYS A 62 N GLU A 22 SHEET 3 A 3 ILE A 110 SER A 112 -1 O HIS A 111 N ILE A 61 SHEET 1 B 5 VAL A 178 PHE A 184 0 SHEET 2 B 5 ALA A 156 ARG A 166 -1 N VAL A 157 O ILE A 183 SHEET 3 B 5 THR A 71 VAL A 77 -1 N THR A 71 O THR A 164 SHEET 4 B 5 TYR A 99 ASP A 103 -1 O ALA A 102 N VAL A 72 SHEET 5 B 5 CYS A 95 ARG A 96 -1 N ARG A 96 O TYR A 99 SHEET 1 C 3 VAL A 178 PHE A 184 0 SHEET 2 C 3 ALA A 156 ARG A 166 -1 N VAL A 157 O ILE A 183 SHEET 3 C 3 PRO A 172 LEU A 174 -1 O LEU A 173 N VAL A 165 SHEET 1 D 2 GLU A 89 VAL A 91 0 SHEET 2 D 2 GLY A 117 GLN A 119 -1 O GLN A 119 N GLU A 89 SHEET 1 E 4 ILE A 196 VAL A 199 0 SHEET 2 E 4 GLU A 211 CYS A 216 -1 O LEU A 215 N ARG A 198 SHEET 3 E 4 ALA A 249 ARG A 253 -1 O PHE A 252 N ILE A 212 SHEET 4 E 4 VAL A 244 HIS A 245 -1 N HIS A 245 O ALA A 249 SHEET 1 F 5 SER A 203 SER A 205 0 SHEET 2 F 5 MET A 284 LEU A 289 1 O LEU A 289 N GLY A 204 SHEET 3 F 5 VAL A 266 ARG A 274 -1 N VAL A 268 O PHE A 286 SHEET 4 F 5 GLU A 225 GLY A 230 -1 N TYR A 227 O GLN A 271 SHEET 5 F 5 TRP A 233 ARG A 236 -1 O TRP A 233 N GLY A 230 SHEET 1 G 4 SER A 203 SER A 205 0 SHEET 2 G 4 MET A 284 LEU A 289 1 O LEU A 289 N GLY A 204 SHEET 3 G 4 VAL A 266 ARG A 274 -1 N VAL A 268 O PHE A 286 SHEET 4 G 4 GLU A 279 LEU A 280 -1 O GLU A 279 N ARG A 274 SHEET 1 H 3 LEU B 42 ILE B 44 0 SHEET 2 H 3 GLN B 81 ILE B 84 -1 O LYS B 83 N GLN B 43 SHEET 3 H 3 VAL B 131 GLY B 133 -1 O VAL B 132 N VAL B 82 SHEET 1 I 3 ARG B 56 TYR B 57 0 SHEET 2 I 3 ILE B 139 HIS B 141 1 O HIS B 141 N ARG B 56 SHEET 3 I 3 SER B 110 LEU B 111 -1 N SER B 110 O LEU B 140 SHEET 1 J 5 ARG B 227 VAL B 233 0 SHEET 2 J 5 VAL B 209 LEU B 218 -1 N LEU B 218 O ARG B 227 SHEET 3 J 5 LYS B 92 VAL B 98 -1 N LYS B 92 O PHE B 217 SHEET 4 J 5 VAL B 120 THR B 124 -1 O CYS B 121 N VAL B 95 SHEET 5 J 5 CYS B 116 GLU B 117 -1 N GLU B 117 O VAL B 120 SHEET 1 K 3 ARG B 227 VAL B 233 0 SHEET 2 K 3 VAL B 209 LEU B 218 -1 N LEU B 218 O ARG B 227 SHEET 3 K 3 ILE B 237 TYR B 238 -1 O ILE B 237 N VAL B 210 SHEET 1 L 4 ILE B 250 MET B 253 0 SHEET 2 L 4 GLU B 265 CYS B 270 -1 O LEU B 269 N ARG B 252 SHEET 3 L 4 ALA B 308 LYS B 312 -1 O ILE B 309 N LEU B 268 SHEET 4 L 4 VAL B 303 HIS B 304 -1 N HIS B 304 O ALA B 308 SHEET 1 M 5 ALA B 257 CYS B 259 0 SHEET 2 M 5 LYS B 343 TYR B 348 1 O LEU B 346 N GLY B 258 SHEET 3 M 5 ALA B 325 ARG B 332 -1 N VAL B 329 O LYS B 343 SHEET 4 M 5 GLN B 279 GLU B 284 -1 N TYR B 283 O PHE B 328 SHEET 5 M 5 TRP B 292 PHE B 295 -1 O GLY B 294 N PHE B 282 SSBOND 1 CYS B 116 CYS B 121 1555 1555 2.04 LINK O3' DG D 4 P 5IU D 5 1555 1555 1.60 LINK O3' 5IU D 5 P DA D 6 1555 1555 1.60 LINK O3' DC D 7 P 5IU D 8 1555 1555 1.62 LINK O3' 5IU D 8 P 5IU D 9 1555 1555 1.61 LINK O3' 5IU D 9 P 5IU D 10 1555 1555 1.62 LINK O3' 5IU D 10 P DC D 11 1555 1555 1.60 CRYST1 137.131 179.697 97.068 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010302 0.00000