PDB Short entry for 1LFN HEADER TRANSFERASE 11-APR-02 1LFN TITLE THEORETICAL STRUCTURE OF HUMAN-CYCLIN DEPENDENT KINASE 3 TITLE 2 (CDK3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYCLIN-DEPENDENT KINASE 3, CDK3; COMPND 5 EC: 2.7.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE, ATP-BINDING, KEYWDS 2 CELL CYCLE, CELL DIVISION, MITOSIS, PHOSPHORYLATION EXPDTA THEORETICAL MODEL AUTHOR K.NARAYANA,T.RAJASEKHAR,J.A.R.P.SARMA REVDAT 1 24-APR-02 1LFN 0 JRNL AUTH K.NARAYANA,T.RAJASEKHAR,J.A.R.P.SARMA JRNL TITL THEORETICAL STRUCTURE OF HUMAN CYCLIN-DEPENDENT JRNL TITL 2 KINASE 3 (CDK3) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MEYERSON,G.H.ENDERS,C.L.WU,L.K.SU,C.GORKA, REMARK 1 AUTH 2 C.NELSON,E.HARLOW,L.H.TSAI REMARK 1 TITL A FAMILY OF HUMAN CDC2-RELATED PROTEIN KINASES REMARK 1 REF EMBO J. V. 11 2909 1992 REMARK 1 REFN ASTM EMJODG UK ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.R.BROWN,M.E.M.NOBLE,J.A.ENDICOTT,L.N.JOHNSON REMARK 1 TITL THE STRUCTURAL BASIS FOR SPECIFICITY OF SUBSTRATE REMARK 1 TITL 2 AND RECRUITMENT PEPTIDES FOR CYCLIN-DEPENDANT REMARK 1 TITL 3 KINASES REMARK 1 REF NAT.CELL BIOL. V. 1 438 1999 REMARK 1 REFN UK ISSN 1465-7392 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED MODELER OF INSIGHTII,ACCELRYS REMARK 3 TO MODEL AND REFINE THE PROTEIN. REMARK 4 REMARK 4 1LFN COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-2002. REMARK 100 THE RCSB ID CODE IS RCSB015903. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: COMPARATIVE MODELLING REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 291 N - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 98 154.45 86.17 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QMZ RELATED DB: PDB REMARK 900 1QMZ CHAIN A HAS 76% SEQUENCE SIMILARITY (E-131) WITH CDK3 REMARK 900 RELATED ID: 1F5Q RELATED DB: PDB REMARK 900 1F5Q CHAIN A HAS 76% SEQUENCE SIMILARITY (E-132) WITH CDK3 REMARK 900 RELATED ID: 1DM2 RELATED DB: PDB REMARK 900 1DM2 CHAIN A HAS 76% SEQUENCE SIMILARITY (E-132) WITH CDK3 DBREF 1LFN A 1 305 UNP Q00526 CDK3_HUMAN 1 305 SEQRES 1 A 305 MET ASP MET PHE GLN LYS VAL GLU LYS ILE GLY GLU GLY SEQRES 2 A 305 THR TYR GLY VAL VAL TYR LYS ALA LYS ASN ARG GLU THR SEQRES 3 A 305 GLY GLN LEU VAL ALA LEU LYS LYS ILE ARG LEU ASP LEU SEQRES 4 A 305 GLU MET GLU GLY VAL PRO SER THR ALA ILE ARG GLU ILE SEQRES 5 A 305 SER LEU LEU LYS GLU LEU LYS HIS PRO ASN ILE VAL ARG SEQRES 6 A 305 LEU LEU ASP VAL VAL HIS ASN GLU ARG LYS LEU TYR LEU SEQRES 7 A 305 VAL PHE GLU PHE LEU SER GLN ASP LEU LYS LYS TYR MET SEQRES 8 A 305 ASP SER THR PRO GLY SER GLU LEU PRO LEU HIS LEU ILE SEQRES 9 A 305 LYS SER TYR LEU PHE GLN LEU LEU GLN GLY VAL SER PHE SEQRES 10 A 305 CYS HIS SER HIS ARG VAL ILE HIS ARG ASP LEU LYS PRO SEQRES 11 A 305 GLN ASN LEU LEU ILE ASN GLU LEU GLY ALA ILE LYS LEU SEQRES 12 A 305 ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO LEU SEQRES 13 A 305 ARG THR TYR THR HIS GLU VAL VAL THR LEU TRP TYR ARG SEQRES 14 A 305 ALA PRO GLU ILE LEU LEU GLY SER LYS PHE TYR THR THR SEQRES 15 A 305 ALA VAL ASP ILE TRP SER ILE GLY CYS ILE PHE ALA GLU SEQRES 16 A 305 MET VAL THR ARG LYS ALA LEU PHE PRO GLY ASP SER GLU SEQRES 17 A 305 ILE ASP GLN LEU PHE ARG ILE PHE ARG MET LEU GLY THR SEQRES 18 A 305 PRO SER GLU ASP THR TRP PRO GLY VAL THR GLN LEU PRO SEQRES 19 A 305 ASP TYR LYS GLY SER PHE PRO LYS TRP THR ARG LYS GLY SEQRES 20 A 305 LEU GLU GLU ILE VAL PRO ASN LEU GLU PRO GLU GLY ARG SEQRES 21 A 305 ASP LEU LEU MET GLN LEU LEU GLN TYR ASP PRO SER GLN SEQRES 22 A 305 ARG ILE THR ALA LYS THR ALA LEU ALA HIS PRO TYR PHE SEQRES 23 A 305 SER SER PRO GLU PRO SER PRO ALA ALA ARG GLN TYR VAL SEQRES 24 A 305 LEU GLN ARG PHE ARG HIS HELIX 1 1 PRO A 45 LEU A 58 1 14 HELIX 2 2 LEU A 87 THR A 94 1 8 HELIX 3 3 PRO A 100 HIS A 121 1 22 HELIX 4 4 LYS A 129 GLN A 131 5 3 HELIX 5 5 ALA A 170 GLY A 176 1 7 HELIX 6 6 THR A 182 ARG A 199 1 18 HELIX 7 7 SER A 207 GLY A 220 1 14 HELIX 8 8 GLY A 229 LEU A 233 5 5 HELIX 9 9 GLY A 247 VAL A 252 1 6 HELIX 10 10 GLU A 256 LEU A 267 1 12 HELIX 11 11 THR A 276 HIS A 283 1 8 HELIX 12 12 PRO A 284 SER A 287 5 4 SHEET 1 A 5 PHE A 4 GLU A 12 0 SHEET 2 A 5 VAL A 17 ASN A 23 -1 O LYS A 20 N GLU A 8 SHEET 3 A 5 LEU A 29 ARG A 36 -1 O LEU A 32 N TYR A 19 SHEET 4 A 5 LYS A 75 GLU A 81 -1 O PHE A 80 N ALA A 31 SHEET 5 A 5 LEU A 66 HIS A 71 -1 N ASP A 68 O VAL A 79 SHEET 1 B 3 GLN A 85 ASP A 86 0 SHEET 2 B 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 B 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 SHEET 1 C 3 VAL A 123 ILE A 124 0 SHEET 2 C 3 ARG A 150 ALA A 151 -1 O ARG A 150 N ILE A 124 SHEET 3 C 3 VAL A 154 PRO A 155 -1 O VAL A 154 N ALA A 151 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000