PDB Short entry for 1LGB HEADER COMPLEX(LECTIN/TRANSFERRIN) 07-JAN-94 1LGB TITLE INTERACTION OF A LEGUME LECTIN WITH THE N2 FRAGMENT OF HUMAN TITLE 2 LACTOTRANSFERRIN OR WITH THE ISOLATED BIANTENNARY GLYCOPEPTIDE: ROLE TITLE 3 OF THE FUCOSE MOIETY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEGUME ISOLECTIN II (ALPHA CHAIN); COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LEGUME ISOLECTIN II (BETA CHAIN); COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: LACTOTRANSFERRIN (N2 FRAGMENT); COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LATHYRUS OCHRUSS; SOURCE 3 ORGANISM_COMMON: YELLOW-FLOWERED PEA; SOURCE 4 ORGANISM_TAXID: 3858; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: LATHYRUS OCHRUSS; SOURCE 7 ORGANISM_COMMON: YELLOW-FLOWERED PEA; SOURCE 8 ORGANISM_TAXID: 3858; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX(LECTIN-TRANSFERRIN), COMPLEX(LECTIN-TRANSFERRIN) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.BOURNE,C.CAMBILLAU REVDAT 6 29-JUL-20 1LGB 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 29-NOV-17 1LGB 1 HELIX REVDAT 4 13-JUL-11 1LGB 1 VERSN REVDAT 3 24-MAR-09 1LGB 1 SOURCE REVDAT 2 24-FEB-09 1LGB 1 VERSN REVDAT 1 31-AUG-94 1LGB 0 JRNL AUTH Y.BOURNE,J.MAZURIER,D.LEGRAND,P.ROUGE,J.MONTREUIL,G.SPIK, JRNL AUTH 2 C.CAMBILLAU JRNL TITL STRUCTURES OF A LEGUME LECTIN COMPLEXED WITH THE HUMAN JRNL TITL 2 LACTOTRANSFERRIN N2 FRAGMENT, AND WITH AN ISOLATED JRNL TITL 3 BIANTENNARY GLYCOPEPTIDE: ROLE OF THE FUCOSE MOIETY. JRNL REF STRUCTURE V. 2 209 1994 JRNL REFN ISSN 0969-2126 JRNL PMID 8069634 JRNL DOI 10.1016/S0969-2126(00)00022-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.BOURNE,M.-P.NESA,P.ROUGE,J.MAZURIER,D.LEGRAND,G.SPIK, REMARK 1 AUTH 2 J.MONTREUIL,C.CAMBILLAU REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDY OF REMARK 1 TITL 2 LATHYRUS OCHRUS ISOLECTIN II COMPLEXED TO THE HUMAN REMARK 1 TITL 3 LACTOTRANSFERRIN N2 FRAGMENT REMARK 1 REF J.MOL.BIOL. V. 227 938 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.95000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.92500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.97500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 188.92500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.97500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 63.50000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 63.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 125.95000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 1 REMARK 465 THR B 49 REMARK 465 SER B 50 REMARK 465 SER B 51 REMARK 465 SER B 52 REMARK 465 ASN B 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 48 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 121 C THR C 122 N -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 16 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO A 180 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG C 121 CA - C - O ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG C 121 O - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 88.97 -57.99 REMARK 500 GLN A 15 76.54 29.21 REMARK 500 ASN A 17 35.62 -73.17 REMARK 500 ASP A 23 -87.88 -98.40 REMARK 500 THR A 27 -145.22 -154.61 REMARK 500 LYS A 28 84.11 -53.50 REMARK 500 ALA A 36 54.95 -15.04 REMARK 500 TYR A 46 142.66 -34.87 REMARK 500 THR A 57 37.56 -159.23 REMARK 500 ASN A 78 52.74 -150.08 REMARK 500 ALA A 80 147.08 168.50 REMARK 500 VAL A 90 -61.12 -26.69 REMARK 500 THR A 96 125.92 -37.52 REMARK 500 LEU A 101 19.88 57.40 REMARK 500 ASN A 105 -15.35 -149.06 REMARK 500 PHE A 123 108.01 -164.61 REMARK 500 TRP A 128 20.01 -158.14 REMARK 500 SER A 131 90.37 -61.80 REMARK 500 ASN A 132 11.38 -178.86 REMARK 500 ASP A 134 115.09 -3.38 REMARK 500 VAL A 141 101.38 -166.35 REMARK 500 ASN A 142 16.32 53.73 REMARK 500 SER A 143 -98.08 -131.60 REMARK 500 ILE A 144 -34.94 162.61 REMARK 500 SER A 146 -174.76 -60.10 REMARK 500 ASN A 156 112.62 -29.57 REMARK 500 PRO A 180 71.46 -29.25 REMARK 500 PRO B 17 169.26 -37.41 REMARK 500 ALA B 30 39.18 -83.43 REMARK 500 ALA B 33 162.80 179.18 REMARK 500 TRP B 40 133.67 -173.01 REMARK 500 PHE B 42 112.92 -175.74 REMARK 500 LYS C 99 -138.98 -77.12 REMARK 500 PHE C 104 -170.71 -176.44 REMARK 500 ARG C 120 8.53 44.39 REMARK 500 THR C 122 -83.88 -22.02 REMARK 500 ALA C 123 1.56 -61.09 REMARK 500 TRP C 125 -79.49 -165.33 REMARK 500 LEU C 132 -35.77 -175.24 REMARK 500 THR C 139 27.50 -69.45 REMARK 500 ASP C 162 83.93 -58.34 REMARK 500 LYS C 163 2.62 -60.61 REMARK 500 PHE C 166 55.64 -117.18 REMARK 500 PRO C 167 72.06 -64.11 REMARK 500 ASN C 168 -21.44 -172.53 REMARK 500 ALA C 174 1.50 -67.73 REMARK 500 SER C 184 -171.16 -65.22 REMARK 500 PRO C 188 -15.06 -44.25 REMARK 500 SER C 191 174.50 53.45 REMARK 500 TYR C 192 -86.36 -27.99 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 300 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE2 REMARK 620 2 ASP A 129 OD1 161.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 121 OD2 REMARK 620 2 ASP A 121 OD1 69.3 REMARK 620 3 PHE A 123 O 82.0 124.5 REMARK 620 4 ASN A 125 OD1 121.5 168.9 62.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: A REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: MANNOSE BINDING SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: B REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: FUCOSE BINDING CAVITY REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: LECB_LATOC REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 GLN 16 PRO A 16 REMARK 999 LYS 153 ALA A 153 REMARK 999 ALA 168 GLY A 168 REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: LEC2_LATOC REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 SER 47 ALA B 47 REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: TRFL_HUMAN REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 THR 149 ILE C 129 REMARK 999 ARG 220 LYS C 200 DBREF 1LGB A 1 181 UNP P04122 LECB_LATOC 1 181 DBREF 1LGB B 1 53 UNP P12307 LEC2_LATOC 1 53 DBREF 1LGB C 91 249 UNP P02788 TRFL_HUMAN 111 269 SEQADV 1LGB PRO A 16 UNP P04122 GLN 16 CONFLICT SEQADV 1LGB ALA A 153 UNP P04122 LYS 153 CONFLICT SEQADV 1LGB GLY A 168 UNP P04122 ALA 168 CONFLICT SEQADV 1LGB ALA B 47 UNP P12307 SER 47 CONFLICT SEQADV 1LGB LYS C 200 UNP P02788 ARG 220 CONFLICT SEQRES 1 A 181 THR GLU THR THR SER PHE SER ILE THR LYS PHE GLY PRO SEQRES 2 A 181 ASP GLN PRO ASN LEU ILE PHE GLN GLY ASP GLY TYR THR SEQRES 3 A 181 THR LYS GLU ARG LEU THR LEU THR LYS ALA VAL ARG ASN SEQRES 4 A 181 THR VAL GLY ARG ALA LEU TYR SER SER PRO ILE HIS ILE SEQRES 5 A 181 TRP ASP SER LYS THR GLY ASN VAL ALA ASN PHE VAL THR SEQRES 6 A 181 SER PHE THR PHE VAL ILE ASP ALA PRO ASN SER TYR ASN SEQRES 7 A 181 VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL ASP SEQRES 8 A 181 THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL PHE SEQRES 9 A 181 ASN SER LYS ASP TYR ASP LYS THR SER GLN THR VAL ALA SEQRES 10 A 181 VAL GLU PHE ASP THR PHE TYR ASN THR ALA TRP ASP PRO SEQRES 11 A 181 SER ASN GLY ASP ARG HIS ILE GLY ILE ASP VAL ASN SER SEQRES 12 A 181 ILE LYS SER ILE ASN THR LYS SER TRP ALA LEU GLN ASN SEQRES 13 A 181 GLY LYS GLU ALA ASN VAL VAL ILE ALA PHE ASN GLY ALA SEQRES 14 A 181 THR ASN VAL LEU THR VAL SER LEU THR TYR PRO ASN SEQRES 1 B 53 GLU THR SER TYR THR LEU ASN GLU VAL VAL PRO LEU LYS SEQRES 2 B 53 GLU PHE VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 B 53 THR THR GLY ALA GLU PHE ALA ALA HIS GLU VAL LEU SER SEQRES 4 B 53 TRP TYR PHE ASN SER GLU LEU ALA VAL THR SER SER SER SEQRES 5 B 53 ASN SEQRES 1 C 159 HIS TYR TYR ALA VAL ALA VAL VAL LYS LYS GLY GLY SER SEQRES 2 C 159 PHE GLN LEU ASN GLU LEU GLN GLY LEU LYS SER CYS HIS SEQRES 3 C 159 THR GLY LEU ARG ARG THR ALA GLY TRP ASN VAL PRO ILE SEQRES 4 C 159 GLY THR LEU ARG PRO PHE LEU ASN TRP THR GLY PRO PRO SEQRES 5 C 159 GLU PRO ILE GLU ALA ALA VAL ALA ARG PHE PHE SER ALA SEQRES 6 C 159 SER CYS VAL PRO GLY ALA ASP LYS GLY GLN PHE PRO ASN SEQRES 7 C 159 LEU CYS ARG LEU CYS ALA GLY THR GLY GLU ASN LYS CYS SEQRES 8 C 159 ALA PHE SER SER GLN GLU PRO TYR PHE SER TYR SER GLY SEQRES 9 C 159 ALA PHE LYS CYS LEU LYS ASP GLY ALA GLY ASP VAL ALA SEQRES 10 C 159 PHE ILE ARG GLU SER THR VAL PHE GLU ASP LEU SER ASP SEQRES 11 C 159 GLU ALA GLU ARG ASP GLU TYR GLU LEU LEU CYS PRO ASP SEQRES 12 C 159 ASN THR ARG LYS PRO VAL ASP LYS PHE LYS ASP CYS HIS SEQRES 13 C 159 LEU ALA ARG MODRES 1LGB ASN C 137 ASN GLYCOSYLATION SITE HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET GAL D 6 11 HET MAN D 7 11 HET NAG D 8 14 HET FUC D 9 10 HET MN A 300 1 HET CA A 301 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 4 GAL C6 H12 O6 FORMUL 4 FUC C6 H12 O5 FORMUL 5 MN MN 2+ FORMUL 6 CA CA 2+ HELIX 1 5 ARG C 121 LEU C 136 1 16 HELIX 2 6 PRO C 144 PHE C 152 1 9 HELIX 3 7 SER C 191 ALA C 203 1 13 HELIX 4 8 SER C 212 LEU C 218 1 7 HELIX 5 8A GLU C 221 TYR C 227 1 7 SHEET 1 A 8 GLU A 2 THR A 9 0 SHEET 2 A 8 PHE B 32 ALA B 47 -1 SHEET 3 A 8 ALA A 61 ALA A 73 -1 SHEET 4 A 8 LYS A 158 ASN A 167 -1 SHEET 5 A 8 VAL A 172 TYR A 179 -1 SHEET 6 A 8 THR B 2 VAL B 10 -1 SHEET 7 A 8 TYR A 25 THR A 27 -1 SHEET 8 A 8 ARG A 30 LYS A 35 -1 SHEET 1 B 7 LEU A 18 GLY A 22 0 SHEET 2 B 7 THR A 40 TYR A 46 -1 SHEET 3 B 7 TRP B 19 THR B 28 -1 SHEET 4 B 7 GLY A 82 PRO A 89 -1 SHEET 5 B 7 THR A 115 ASP A 121 -1 SHEET 6 B 7 ARG A 135 VAL A 141 -1 SHEET 7 B 7 ASN A 148 SER A 151 -1 SHEET 1 C 5 TYR C 227 CYS C 231 0 SHEET 2 C 5 HIS C 91 LYS C 100 -1 SHEET 3 C 5 VAL C 206 ARG C 210 -1 SHEET 4 C 5 LEU C 112 HIS C 116 1 SHEET 5 C 5 ALA C 155 PRO C 159 1 SSBOND 1 CYS C 115 CYS C 198 1555 1555 2.04 SSBOND 2 CYS C 157 CYS C 173 1555 1555 2.04 SSBOND 3 CYS C 170 CYS C 181 1555 1555 2.02 SSBOND 4 CYS C 231 CYS C 245 1555 1555 2.04 LINK ND2 ASN C 137 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O6 NAG D 1 C1 FUC D 9 1555 1555 1.41 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.38 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.40 LINK O6 BMA D 3 C1 MAN D 7 1555 1555 1.42 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.39 LINK O4 NAG D 5 C1 GAL D 6 1555 1555 1.39 LINK O2 MAN D 7 C1 NAG D 8 1555 1555 1.40 LINK OE2 GLU A 119 MN MN A 300 1555 1555 2.34 LINK OD2 ASP A 121 CA CA A 301 1555 1555 1.71 LINK OD1 ASP A 121 CA CA A 301 1555 1555 2.09 LINK O PHE A 123 CA CA A 301 1555 1555 2.39 LINK OD1 ASN A 125 CA CA A 301 1555 1555 2.49 LINK OD1 ASP A 129 MN MN A 300 1555 1555 2.76 CISPEP 1 ALA A 80 ASP A 81 0 -0.18 CISPEP 2 PRO C 141 PRO C 142 0 0.09 SITE 1 A 6 GLY A 99 ASP A 81 ASN A 125 GLY B 29 SITE 2 A 6 ALA B 30 GLU B 31 SITE 1 B 2 PHE B 32 GLU B 31 CRYST1 63.500 63.500 251.900 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003970 0.00000