PDB Short entry for 1LH9
HEADER    CELL ADHESION                           17-APR-02   1LH9              
TITLE     THEORETICAL MODEL OF THE BETA6 INTEGRIN                               
CAVEAT     1LH9    CHIRALITY ERROR AT THE CA CENTER OF HIS A 398.               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: INTEGRIN BETA-6;                                           
COMPND   3 CHAIN: A                                                             
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN                                               
KEYWDS    CELL ADHESION                                                         
EXPDTA    THEORETICAL MODEL                                                     
AUTHOR    S.RAMA DEVI,S.TAJNE,P.APARNA                                          
REVDAT   1   15-MAY-02 1LH9    0                                                
JRNL        AUTH   S.RAMA DEVI,S.TAJNE,P.APARNA                                 
JRNL        TITL   THEORETICAL MODEL OF BETA6 INTEGRIN                          
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NULL                                                 
REMARK   3   AUTHORS     : NULL                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1LH9 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998                       
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-2002.                
REMARK 100 THE RCSB ID CODE IS RCSB015945.                                      
REMARK 220                                                                      
REMARK 220 EXPERIMENTAL DETAILS                                                 
REMARK 220  EXPERIMENT TYPE                : THEORETICAL MODELLING              
REMARK 220                                                                      
REMARK 220 REMARK: THIS MODEL IS BASED UPON THE COORDINATES OF:PDB ENTRY        
REMARK 220         1JV2/CELL ADHESION/28-AUG-01/CRYSTAL STRUCTURE OF THE        
REMARK 220         EXTRACELLULAR SEGMENT OF INTEGRIN ALPHAVBETA3/X-RAY          
REMARK 220         DIFFRACTION/RESOLUTION. 3.10 ANGSTROMS.                      
REMARK 225                                                                      
REMARK 225 THEORETICAL MODEL                                                    
REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE.           
REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND                
REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE                   
REMARK 225 RECORDS ARE MEANINGLESS.                                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI                             
REMARK 500   NH2  ARG A    24     CG   TYR A    61              1.82            
REMARK 500   NH2  ARG A    24     CD1  TYR A    61              1.83            
REMARK 500   CZ   ARG A    24     CG   TYR A    61              1.98            
REMARK 500   CZ   ARG A    24     CD1  TYR A    61              2.00            
REMARK 500   O    GLU A   300     OE2  GLU A   304              2.10            
REMARK 500   O    CYS A   449     OE1  GLN A   451              2.12            
REMARK 500   NH1  ARG A    24     CG   TYR A    61              2.13            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3)                  
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991                                
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    ARG A  24   CA    ARG A  24   CB    -0.277                        
REMARK 500    ARG A  24   CG    ARG A  24   CD    -0.267                        
REMARK 500    ARG A  24   CD    ARG A  24   NE    -0.248                        
REMARK 500    ARG A  24   NE    ARG A  24   CZ    -0.341                        
REMARK 500    ARG A  24   CZ    ARG A  24   NH1    0.427                        
REMARK 500    ARG A  24   CZ    ARG A  24   NH2    0.740                        
REMARK 500    LYS A  26   CB    LYS A  26   CG    -0.247                        
REMARK 500    LYS A  26   CE    LYS A  26   NZ    -0.304                        
REMARK 500    SER A  29   CA    SER A  29   CB    -0.339                        
REMARK 500    LEU A  51   CG    LEU A  51   CD1   -0.278                        
REMARK 500    TYR A  61   CA    TYR A  61   CB     0.270                        
REMARK 500    TYR A  61   CB    TYR A  61   CG     0.673                        
REMARK 500    TYR A  61   CG    TYR A  61   CD2   -0.560                        
REMARK 500    TYR A  61   CG    TYR A  61   CD1    0.646                        
REMARK 500    TYR A  61   CD1   TYR A  61   CE1   -0.393                        
REMARK 500    LEU A 301   CG    LEU A 301   CD1   -0.272                        
REMARK 500    GLU A 391   C     GLU A 391   O     -0.384                        
REMARK 500    ARG A 444   CD    ARG A 444   NE    -0.263                        
REMARK 500    PRO A 458   CG    PRO A 458   CD    -0.378                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991                                
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A  24   CB  -  CG  -  CD  ANGL. DEV. = 20.4 DEGREES           
REMARK 500    LYS A  26   CG  -  CD  -  CE  ANGL. DEV. = 19.6 DEGREES           
REMARK 500    LYS A  26   CD  -  CE  -  NZ  ANGL. DEV. = 41.9 DEGREES           
REMARK 500    TYR A  61   CD1 -  CE1 -  CZ  ANGL. DEV. =-19.1 DEGREES           
REMARK 500    PHE A 100   CA  -  C   -  O   ANGL. DEV. = 19.0 DEGREES           
REMARK 500    PHE A 100   O   -  C   -  N   ANGL. DEV. =-25.1 DEGREES           
REMARK 500    GLU A 391   CA  -  C   -  O   ANGL. DEV. =-21.9 DEGREES           
REMARK 500    GLU A 391   CA  -  C   -  N   ANGL. DEV. = 17.0 DEGREES           
REMARK 500    ASN A 393   N   -  CA  -  C   ANGL. DEV. = 15.5 DEGREES           
REMARK 500    HIS A 398   N   -  CA  -  CB  ANGL. DEV. = 31.2 DEGREES           
REMARK 500    HIS A 398   CA  -  CB  -  CG  ANGL. DEV. =-21.4 DEGREES           
REMARK 500    HIS A 398   CA  -  C   -  O   ANGL. DEV. =-21.1 DEGREES           
REMARK 500    HIS A 398   C   -  N   -  CA  ANGL. DEV. = 28.8 DEGREES           
REMARK 500    HIS A 398   CA  -  C   -  N   ANGL. DEV. = 20.2 DEGREES           
REMARK 500    PHE A 404   CA  -  C   -  O   ANGL. DEV. = 18.2 DEGREES           
REMARK 500    PHE A 404   O   -  C   -  N   ANGL. DEV. =-21.7 DEGREES           
REMARK 500    ARG A 444   CB  -  CG  -  CD  ANGL. DEV. = 17.3 DEGREES           
REMARK 500    ARG A 444   CG  -  CD  -  NE  ANGL. DEV. = 17.1 DEGREES           
REMARK 500    TYR A 463   CE1 -  CZ  -  OH  ANGL. DEV. = 15.3 DEGREES           
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A 117     -115.63   -155.29                                   
REMARK 500    HIS A 332      -48.69    115.68                                   
REMARK 500    ASP A 425      -98.30     52.52                                   
REMARK 500    ALA A 435      -50.50     96.98                                   
REMARK 500    HIS A 438      -39.82     94.02                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 CYS A  454    HIS A  455                   58.02                     
DBREF  1LH9 A    6   476  UNP    P18564   ITB6_HUMAN      76    546             
SEQRES   1 A  471  GLU ASN PRO VAL SER GLN VAL GLU ILE LEU LYS ASN LYS          
SEQRES   2 A  471  PRO LEU SER VAL GLY ARG GLN LYS ASN SER SER ASP ILE          
SEQRES   3 A  471  VAL GLN ILE ALA PRO GLN SER LEU ILE LEU LYS LEU ARG          
SEQRES   4 A  471  PRO GLY GLY ALA GLN THR LEU GLN VAL HIS VAL ARG GLN          
SEQRES   5 A  471  THR GLU ASP TYR PRO VAL ASP LEU TYR TYR LEU MET ASP          
SEQRES   6 A  471  LEU SER ALA SER MET ASP ASP ASP LEU ASN THR ILE LYS          
SEQRES   7 A  471  GLU LEU GLY SER ARG LEU SER LYS GLU MET SER LYS LEU          
SEQRES   8 A  471  THR SER ASN PHE ARG LEU GLY PHE GLY SER PHE VAL GLU          
SEQRES   9 A  471  LYS PRO VAL SER PRO PHE VAL LYS THR THR PRO GLU GLU          
SEQRES  10 A  471  ILE ALA ASN PRO CYS SER SER ILE PRO TYR PHE CYS LEU          
SEQRES  11 A  471  PRO THR PHE GLY PHE LYS HIS ILE LEU PRO LEU THR ASN          
SEQRES  12 A  471  ASP ALA GLU ARG PHE ASN GLU ILE VAL LYS ASN GLN LYS          
SEQRES  13 A  471  ILE SER ALA ASN ILE ASP THR PRO GLU GLY GLY PHE ASP          
SEQRES  14 A  471  ALA ILE MET GLN ALA ALA VAL CYS LYS GLU LYS ILE GLY          
SEQRES  15 A  471  TRP ARG ASN ASP SER LEU HIS LEU LEU VAL PHE VAL SER          
SEQRES  16 A  471  ASP ALA ASP SER HIS PHE GLY MET ASP SER LYS LEU ALA          
SEQRES  17 A  471  GLY ILE VAL ILE PRO ASN ASP GLY LEU CYS HIS LEU ASP          
SEQRES  18 A  471  SER LYS ASN GLU TYR SER MET SER THR VAL LEU GLU TYR          
SEQRES  19 A  471  PRO THR ILE GLY GLN LEU ILE ASP LYS LEU VAL GLN ASN          
SEQRES  20 A  471  ASN VAL LEU LEU ILE PHE ALA VAL THR GLN GLU GLN VAL          
SEQRES  21 A  471  HIS LEU TYR GLU ASN TYR ALA LYS LEU ILE PRO GLY ALA          
SEQRES  22 A  471  THR VAL GLY LEU LEU GLN LYS ASP SER GLY ASN ILE LEU          
SEQRES  23 A  471  GLN LEU ILE ILE SER ALA TYR GLU GLU LEU ARG SER GLU          
SEQRES  24 A  471  VAL GLU LEU GLU VAL LEU GLY ASP THR GLU GLY LEU ASN          
SEQRES  25 A  471  LEU SER PHE THR ALA ILE CYS ASN ASN GLY THR LEU PHE          
SEQRES  26 A  471  GLN HIS GLN LYS LYS CYS SER HIS MET LYS VAL GLY ASP          
SEQRES  27 A  471  THR ALA SER PHE SER VAL THR VAL ASN ILE PRO HIS CYS          
SEQRES  28 A  471  GLU ARG ARG SER ARG HIS ILE ILE ILE LYS PRO VAL GLY          
SEQRES  29 A  471  LEU GLY ASP ALA LEU GLU LEU LEU VAL SER PRO GLU CYS          
SEQRES  30 A  471  ASN CYS ASP CYS GLN LYS GLU VAL GLU VAL ASN SER SER          
SEQRES  31 A  471  LYS CYS HIS HIS GLY ASN GLY SER PHE GLN CYS GLY VAL          
SEQRES  32 A  471  CYS ALA CYS HIS PRO GLY HIS MET GLY PRO ARG CYS GLU          
SEQRES  33 A  471  CYS GLY GLU ASP MET LEU SER THR ASP SER CYS LYS GLU          
SEQRES  34 A  471  ALA PRO ASP HIS PRO SER CYS SER GLY ARG GLY ASP CYS          
SEQRES  35 A  471  TYR CYS GLY GLN CYS ILE CYS HIS LEU SER PRO TYR GLY          
SEQRES  36 A  471  ASN ILE TYR GLY PRO TYR CYS GLN CYS ASP ASN PHE SER          
SEQRES  37 A  471  CYS VAL ARG                                                  
HELIX    1   1 SER A   72  ASP A   76  5                                   5    
HELIX    2   2 GLY A   86  LYS A   95  1                                  10    
HELIX    3   3 VAL A  112  VAL A  116  5                                   5    
HELIX    4   4 PRO A  120  ALA A  124  5                                   5    
HELIX    5   5 GLU A  151  ASN A  159  1                                   9    
HELIX    6   6 GLY A  172  CYS A  182  1                                  11    
HELIX    7   7 CYS A  182  GLY A  187  1                                   6    
HELIX    8   8 MET A  208  LEU A  212  5                                   5    
HELIX    9   9 TYR A  231  VAL A  236  5                                   6    
HELIX   10  10 THR A  241  ASN A  252  1                                  12    
HELIX   11  11 GLN A  264  ILE A  275  1                                  12    
HELIX   12  12 SER A  287  ASN A  289  5                                   3    
HELIX   13  13 ILE A  290  ARG A  302  1                                  13    
HELIX   14  14 PRO A  439  ARG A  444  5                                   6    
HELIX   15  15 ASN A  471  VAL A  475  5                                   5    
SHEET    1   A 4 LEU A  39  LEU A  43  0                                        
SHEET    2   A 4 LEU A 374  PRO A 380  1  O  SER A 379   N  LEU A  43           
SHEET    3   A 4 ARG A 361  PRO A 367 -1  N  ARG A 361   O  VAL A 378           
SHEET    4   A 4 LEU A 307  LEU A 310 -1  N  GLU A 308   O  LYS A 366           
SHEET    1   B 2 ALA A  48  LEU A  51  0                                        
SHEET    2   B 2 VAL A 349  ASN A 352 -1  O  VAL A 349   N  LEU A  51           
SHEET    1   C 2 HIS A  54  ARG A  56  0                                        
SHEET    2   C 2 THR A 344  SER A 346 -1  O  ALA A 345   N  VAL A  55           
SHEET    1   D 6 PHE A 140  LYS A 141  0                                        
SHEET    2   D 6 PHE A 100  PHE A 107 -1  N  SER A 106   O  LYS A 141           
SHEET    3   D 6 VAL A  63  ASP A  70  1  N  VAL A  63   O  ARG A 101           
SHEET    4   D 6 LEU A 193  SER A 200  1  O  VAL A 197   N  LEU A  68           
SHEET    5   D 6 LEU A 256  THR A 261  1  O  ILE A 257   N  LEU A 196           
SHEET    6   D 6 THR A 279  LEU A 283  1  O  LEU A 283   N  VAL A 260           
SHEET    1   E 2 ASP A 446  TYR A 448  0                                        
SHEET    2   E 2 GLN A 451  ILE A 453 -1  O  GLN A 451   N  TYR A 448           
SSBOND   1 CYS A  127    CYS A  134                                             
SSBOND   2 CYS A  182    CYS A  223                                             
SSBOND   3 CYS A  324    CYS A  336                                             
SSBOND   4 CYS A  356    CYS A  384                                             
SSBOND   5 CYS A  397    CYS A  406                                             
SSBOND   6 CYS A  411    CYS A  420                                             
SSBOND   7 CYS A  422    CYS A  449                                             
SSBOND   8 CYS A  432    CYS A  447                                             
SSBOND   9 CYS A  441    CYS A  452                                             
CISPEP   1 VAL A  392    ASN A  393          0         4.97                     
CISPEP   2 LEU A  427    SER A  428          0        24.97                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000