PDB Short entry for 1LHA HEADER CELL ADHESION 17-APR-02 1LHA TITLE THEORETICAL MODEL OF BETA1 INTEGRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FIBRONECTIN RECEPTOR BETA SUBUNIT, CD29, INTEGRIN COMPND 5 VLA-4 BETA SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS CELL ADHESION EXPDTA THEORETICAL MODEL AUTHOR S.RAMA DEVI,S.TAJNE REVDAT 1 15-MAY-02 1LHA 0 JRNL AUTH S.RAMA DEVI,S.TAJNE JRNL TITL THEORETICAL MODEL OF BETA1 INTEGRIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LHA COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-2002. REMARK 100 THE RCSB ID CODE IS RCSB015946. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL IS BASED UPON THE COORDINATES OF: PDB ENTRY REMARK 220 1JV2/CELL ADHESION/28-AUG-01/CRYSTAL STRUCTURE OF THE REMARK 220 EXTRACELLULAR SEGMENT OF INTEGRIN ALPHAVBETA3/X-RAY REMARK 220 DIFFRACTION/RESOLUTION. 3.10 ANGSTROMS. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 60 CB ILE A 60 CG2 -0.099 REMARK 500 CYS A 379 CA CYS A 379 CB -0.093 REMARK 500 GLU A 396 CA GLU A 396 CB -0.125 REMARK 500 GLU A 396 CB GLU A 396 CG -0.117 REMARK 500 PHE A 401 CG PHE A 401 CD2 -0.124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 36 CD1 - CG - CD2 ANGL. DEV. =-17.1 DEGREES REMARK 500 SER A 126 CA - CB - OG ANGL. DEV. = 19.5 DEGREES REMARK 500 CYS A 352 CB - CA - C ANGL. DEV. =-17.7 DEGREES REMARK 500 CYS A 379 CA - CB - SG ANGL. DEV. = 18.1 DEGREES REMARK 500 GLU A 396 N - CA - CB ANGL. DEV. =-25.0 DEGREES REMARK 500 GLU A 396 CA - CB - CG ANGL. DEV. = 32.0 DEGREES REMARK 500 GLU A 396 CG - CD - OE1 ANGL. DEV. =-15.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 126 144.69 88.48 REMARK 500 SER A 135 -71.08 97.97 REMARK 500 LYS A 305 -117.89 67.87 REMARK 500 ASN A 323 10.76 117.75 REMARK 500 ASN A 328 -43.48 115.50 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 119 LEU A 120 138.73 REMARK 500 THR A 125 SER A 126 44.66 REMARK 500 VAL A 187 THR A 188 102.40 REMARK 500 VAL A 322 ASN A 323 143.88 REMARK 500 PRO A 389 GLU A 390 145.32 REMARK 500 ASN A 425 SER A 426 -144.39 REMARK 500 ARG A 434 LYS A 435 143.23 DBREF 1LHA A 3 460 GB 19743817 NP_391987 86 543 SEQRES 1 A 458 SER LYS ASP ILE LYS LYS ASN LYS ASN VAL THR ASN ARG SEQRES 2 A 458 SER LYS GLY THR ALA GLU LYS LEU LYS PRO GLU ASP ILE SEQRES 3 A 458 THR GLN ILE GLN PRO GLN GLN LEU VAL LEU ARG LEU ARG SEQRES 4 A 458 SER GLY GLU PRO GLN THR PHE THR LEU LYS PHE LYS ARG SEQRES 5 A 458 ALA GLU ASP TYR PRO ILE ASP LEU TYR TYR LEU MET ASP SEQRES 6 A 458 LEU SER TYR SER MET LYS ASP ASP LEU GLU ASN VAL LYS SEQRES 7 A 458 SER LEU GLY THR ASP LEU MET ASN GLU MET ARG ARG ILE SEQRES 8 A 458 THR SER ASP PHE ARG ILE GLY PHE GLY SER PHE VAL GLU SEQRES 9 A 458 LYS THR VAL MET PRO TYR ILE SER THR THR PRO ALA LYS SEQRES 10 A 458 LEU ARG ASN PRO CYS THR SER GLU GLN ASN CYS THR SER SEQRES 11 A 458 PRO PHE SER TYR LYS ASN VAL LEU SER LEU THR ASN LYS SEQRES 12 A 458 GLY GLU VAL PHE ASN GLU LEU VAL GLY LYS GLN ARG ILE SEQRES 13 A 458 SER GLY ASN LEU ASP SER PRO GLU GLY GLY PHE ASP ALA SEQRES 14 A 458 ILE MET GLN VAL ALA VAL CYS GLY SER LEU ILE GLY TRP SEQRES 15 A 458 ARG ASN VAL THR ARG LEU LEU VAL PHE SER THR ASP ALA SEQRES 16 A 458 GLY PHE HIS PHE ALA GLY ASP GLY LYS LEU GLY GLY ILE SEQRES 17 A 458 VAL LEU PRO ASN ASP GLY GLN CYS HIS LEU GLU ASN ASN SEQRES 18 A 458 MET TYR THR MET SER HIS TYR TYR ASP TYR PRO SER ILE SEQRES 19 A 458 ALA HIS LEU VAL GLN LYS LEU SER GLU ASN ASN ILE GLN SEQRES 20 A 458 THR ILE PHE ALA VAL THR GLU GLU PHE GLN PRO VAL TYR SEQRES 21 A 458 LYS GLU LEU LYS ASN LEU ILE PRO LYS SER ALA VAL GLY SEQRES 22 A 458 THR LEU SER ALA ASN SER SER ASN VAL ILE GLN LEU ILE SEQRES 23 A 458 ILE ASP ALA TYR ASN SER LEU SER SER GLU VAL ILE LEU SEQRES 24 A 458 GLU ASN GLY LYS LEU SER GLU GLY VAL THR ILE SER TYR SEQRES 25 A 458 LYS SER TYR CYS LYS ASN GLY VAL ASN GLY THR GLY GLU SEQRES 26 A 458 ASN GLY ARG LYS CYS SER ASN ILE SER ILE GLY ASP GLU SEQRES 27 A 458 VAL GLN PHE GLU ILE SER ILE THR SER ASN LYS CYS PRO SEQRES 28 A 458 LYS LYS ASP SER ASP SER PHE LYS ILE ARG PRO LEU GLY SEQRES 29 A 458 PHE THR GLU GLU VAL GLU VAL ILE LEU GLN TYR ILE CYS SEQRES 30 A 458 GLU CYS GLU CYS GLN SER GLU GLY ILE PRO GLU SER PRO SEQRES 31 A 458 LYS CYS HIS GLU GLY ASN GLY THR PHE GLU CYS GLY ALA SEQRES 32 A 458 CYS ARG CYS ASN GLU GLY ARG VAL GLY ARG HIS CYS GLU SEQRES 33 A 458 CYS SER THR ASP GLU VAL ASN SER GLU ASP MET ASP ALA SEQRES 34 A 458 TYR CYS ARG LYS GLU ASN SER SER GLU ILE CYS SER ASN SEQRES 35 A 458 ASN GLY GLU CYS VAL CYS GLY GLN CYS VAL CYS ARG LYS SEQRES 36 A 458 ARG ASP ASN HELIX 1 1 SER A 69 LYS A 73 5 5 HELIX 2 2 GLY A 83 ARG A 92 1 10 HELIX 3 3 GLU A 147 LYS A 155 1 9 HELIX 4 4 GLY A 168 CYS A 178 1 11 HELIX 5 5 CYS A 178 GLY A 183 1 6 HELIX 6 6 GLY A 203 LEU A 207 5 5 HELIX 7 7 TYR A 225 TYR A 230 5 6 HELIX 8 8 SER A 235 ASN A 246 1 12 HELIX 9 9 PHE A 258 ILE A 269 1 12 HELIX 10 10 SER A 281 ASN A 283 5 3 HELIX 11 11 VAL A 284 SER A 296 1 13 HELIX 12 12 SER A 426 ASP A 430 5 5 HELIX 13 13 ILE A 441 ASN A 444 5 4 SHEET 1 A 4 GLN A 35 LEU A 40 0 SHEET 2 A 4 VAL A 371 TYR A 377 1 O GLN A 376 N LEU A 40 SHEET 3 A 4 SER A 359 PRO A 364 -1 N ILE A 362 O VAL A 371 SHEET 4 A 4 LEU A 301 GLY A 304 -1 N GLU A 302 O ARG A 363 SHEET 1 B 2 PRO A 45 PHE A 48 0 SHEET 2 B 2 ILE A 345 THR A 348 -1 O ILE A 345 N PHE A 48 SHEET 1 C 2 LYS A 51 LYS A 53 0 SHEET 2 C 2 GLU A 340 GLN A 342 -1 O VAL A 341 N PHE A 52 SHEET 1 D 6 TYR A 136 LYS A 137 0 SHEET 2 D 6 PHE A 97 PHE A 104 -1 N SER A 103 O LYS A 137 SHEET 3 D 6 ILE A 60 ASP A 67 1 N ILE A 60 O ARG A 98 SHEET 4 D 6 ARG A 189 THR A 195 1 O VAL A 192 N LEU A 65 SHEET 5 D 6 THR A 250 THR A 255 1 O ILE A 251 N LEU A 191 SHEET 6 D 6 ALA A 273 LEU A 277 1 O LEU A 277 N VAL A 254 SHEET 1 E 2 GLY A 446 VAL A 449 0 SHEET 2 E 2 GLN A 452 CYS A 455 -1 O VAL A 454 N GLU A 447 SSBOND 1 CYS A 178 CYS A 218 SSBOND 2 CYS A 318 CYS A 332 SSBOND 3 CYS A 408 CYS A 417 SSBOND 4 CYS A 419 CYS A 450 SSBOND 5 CYS A 442 CYS A 453 CISPEP 1 ASN A 222 ASN A 223 0 1.63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000