PDB Short entry for 1LII HEADER TRANSFERASE 17-APR-02 1LII TITLE STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO ADENOSINE 2 AND AMP- TITLE 2 PCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK, ADENOSINE 5'-PHOSPHOTRANSFERASE; COMPND 5 EC: 2.7.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PBACE KEYWDS ALPHA-BETA STRUCTURE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,D.M.SCOTT,I.I.MATHEWS,S.E.EALICK,D.S.ROOS,B.ULLMAN, AUTHOR 2 R.G.BRENNAN REVDAT 3 14-FEB-24 1LII 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1LII 1 VERSN REVDAT 1 15-MAY-02 1LII 0 SPRSDE 15-MAY-02 1LII 1DGY JRNL AUTH M.A.SCHUMACHER,D.M.SCOTT,I.I.MATHEWS,S.E.EALICK,D.S.ROOS, JRNL AUTH 2 B.ULLMAN,R.G.BRENNAN JRNL TITL CRYSTAL STRUCTURES OF TOXOPLASMA GONDII ADENOSINE KINASE JRNL TITL 2 REVEAL A NOVEL CATALYTIC MECHANISM AND PRODRUG BINDING. JRNL REF J.MOL.BIOL. V. 298 875 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10801355 JRNL DOI 10.1006/JMBI.2000.3753 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 34526 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3400 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 35500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 15.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PH 6.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 ALA A 239 REMARK 465 GLU A 240 REMARK 465 VAL A 255 REMARK 465 CYS A 256 REMARK 465 THR A 257 REMARK 465 GLY A 258 REMARK 465 ALA A 259 REMARK 465 LEU A 260 REMARK 465 ARG A 261 REMARK 465 LEU A 262 REMARK 465 LEU A 263 REMARK 465 THR A 264 REMARK 465 ALA A 265 REMARK 465 GLY A 266 REMARK 465 GLN A 267 REMARK 465 ASN A 268 REMARK 465 THR A 269 REMARK 465 THR A 359 REMARK 465 SER A 360 REMARK 465 LEU A 361 REMARK 465 PRO A 362 REMARK 465 CYS A 363 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 VAL A 242 CG1 CG2 REMARK 470 LEU A 244 CG CD1 CD2 REMARK 470 VAL A 246 CG1 CG2 REMARK 470 ASN A 248 CG OD1 ND2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 HIS A 251 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 253 CG1 CG2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB GLN A 60 O HOH A 1034 1.68 REMARK 500 CG GLN A 60 O HOH A 1034 2.06 REMARK 500 O2G ACP A 799 O HOH A 1167 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 96 CA ASP A 96 CB -0.182 REMARK 500 ASP A 96 CB ASP A 96 CG -0.352 REMARK 500 ASP A 96 CG ASP A 96 OD1 0.360 REMARK 500 GLU A 180 CG GLU A 180 CD 0.143 REMARK 500 GLU A 180 CD GLU A 180 OE2 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 12 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO A 12 CB - CA - C ANGL. DEV. = -21.2 DEGREES REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 76 NH1 - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 96 OD1 - CG - OD2 ANGL. DEV. = 21.7 DEGREES REMARK 500 ASP A 96 CB - CG - OD1 ANGL. DEV. = -30.3 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 MET A 117 CG - SD - CE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 HIS A 234 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 292 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 SER A 329 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 LYS A 335 CG - CD - CE ANGL. DEV. = -19.6 DEGREES REMARK 500 SER A 355 CB - CA - C ANGL. DEV. = -11.8 DEGREES REMARK 500 PHE A 358 CB - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 12 -76.10 -48.05 REMARK 500 ARG A 83 -49.25 65.44 REMARK 500 GLU A 133 -120.33 66.63 REMARK 500 THR A 174 139.47 177.84 REMARK 500 ASN A 190 3.00 84.50 REMARK 500 SER A 198 -56.54 63.34 REMARK 500 TYR A 206 41.07 -109.44 REMARK 500 HIS A 234 -146.69 -100.58 REMARK 500 ASN A 235 -103.10 -93.92 REMARK 500 LEU A 236 -52.96 20.77 REMARK 500 VAL A 237 -124.04 52.35 REMARK 500 VAL A 253 -81.14 -67.00 REMARK 500 ARG A 279 70.32 -156.69 REMARK 500 SER A 357 -95.09 -162.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 96 0.08 SIDE CHAIN REMARK 500 GLU A 180 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 999 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A 799 O1B REMARK 620 2 HOH A1118 O 91.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 699 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 799 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LIJ RELATED DB: PDB REMARK 900 STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO PRODRUG 2 7- REMARK 900 IODOTUBERCIDIN AND AMP-PCP REMARK 900 RELATED ID: 1LIK RELATED DB: PDB REMARK 900 STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO ADENOSINE REMARK 900 RELATED ID: 1LIO RELATED DB: PDB REMARK 900 STRUCTURE OF APO T. GONDII ADENOSINE KINASE DBREF 1LII A 1 363 UNP Q9TVW2 ADK_TOXGO 1 363 SEQADV 1LII THR A 126 UNP Q9TVW2 VAL 126 CONFLICT SEQADV 1LII ILE A 150 UNP Q9TVW2 LEU 150 CONFLICT SEQADV 1LII ASN A 153 UNP Q9TVW2 ASP 153 CONFLICT SEQADV 1LII VAL A 242 UNP Q9TVW2 THR 242 CONFLICT SEQADV 1LII VAL A 246 UNP Q9TVW2 THR 246 CONFLICT SEQADV 1LII GLY A 327 UNP Q9TVW2 ALA 327 CONFLICT SEQRES 1 A 363 MET ALA VAL ASP SER SER ASN SER ALA THR GLY PRO MET SEQRES 2 A 363 ARG VAL PHE ALA ILE GLY ASN PRO ILE LEU ASP LEU VAL SEQRES 3 A 363 ALA GLU VAL PRO SER SER PHE LEU ASP GLU PHE PHE LEU SEQRES 4 A 363 LYS ARG GLY ASP ALA THR LEU ALA THR PRO GLU GLN MET SEQRES 5 A 363 ARG ILE TYR SER THR LEU ASP GLN PHE ASN PRO THR SER SEQRES 6 A 363 LEU PRO GLY GLY SER ALA LEU ASN SER VAL ARG VAL VAL SEQRES 7 A 363 GLN LYS LEU LEU ARG LYS PRO GLY SER ALA GLY TYR MET SEQRES 8 A 363 GLY ALA ILE GLY ASP ASP PRO ARG GLY GLN VAL LEU LYS SEQRES 9 A 363 GLU LEU CYS ASP LYS GLU GLY LEU ALA THR ARG PHE MET SEQRES 10 A 363 VAL ALA PRO GLY GLN SER THR GLY THR CYS ALA VAL LEU SEQRES 11 A 363 ILE ASN GLU LYS GLU ARG THR LEU CYS THR HIS LEU GLY SEQRES 12 A 363 ALA CYS GLY SER PHE ARG ILE PRO GLU ASN TRP THR THR SEQRES 13 A 363 PHE ALA SER GLY ALA LEU ILE PHE TYR ALA THR ALA TYR SEQRES 14 A 363 THR LEU THR ALA THR PRO LYS ASN ALA LEU GLU VAL ALA SEQRES 15 A 363 GLY TYR ALA HIS GLY ILE PRO ASN ALA ILE PHE THR LEU SEQRES 16 A 363 ASN LEU SER ALA PRO PHE CYS VAL GLU LEU TYR LYS ASP SEQRES 17 A 363 ALA MET GLN SER LEU LEU LEU HIS THR ASN ILE LEU PHE SEQRES 18 A 363 GLY ASN GLU GLU GLU PHE ALA HIS LEU ALA LYS VAL HIS SEQRES 19 A 363 ASN LEU VAL ALA ALA GLU LYS VAL ALA LEU SER VAL ALA SEQRES 20 A 363 ASN LYS GLU HIS ALA VAL GLU VAL CYS THR GLY ALA LEU SEQRES 21 A 363 ARG LEU LEU THR ALA GLY GLN ASN THR GLY ALA THR LYS SEQRES 22 A 363 LEU VAL VAL MET THR ARG GLY HIS ASN PRO VAL ILE ALA SEQRES 23 A 363 ALA GLU GLN THR ALA ASP GLY THR VAL VAL VAL HIS GLU SEQRES 24 A 363 VAL GLY VAL PRO VAL VAL ALA ALA GLU LYS ILE VAL ASP SEQRES 25 A 363 THR ASN GLY ALA GLY ASP ALA PHE VAL GLY GLY PHE LEU SEQRES 26 A 363 TYR GLY LEU SER GLN GLY LYS THR VAL LYS GLN CYS ILE SEQRES 27 A 363 MET CYS GLY ASN ALA CYS ALA GLN ASP VAL ILE GLN HIS SEQRES 28 A 363 VAL GLY PHE SER LEU SER PHE THR SER LEU PRO CYS HET MG A 999 1 HET CL A 899 1 HET ADN A 699 19 HET ACP A 799 31 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM ADN ADENOSINE HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 CL CL 1- FORMUL 4 ADN C10 H13 N5 O4 FORMUL 5 ACP C11 H18 N5 O12 P3 FORMUL 6 HOH *170(H2 O) HELIX 1 1 PRO A 30 PHE A 37 1 8 HELIX 2 2 THR A 48 MET A 52 5 5 HELIX 3 3 ARG A 53 LEU A 58 1 6 HELIX 4 4 ASP A 59 ASN A 62 5 4 HELIX 5 5 GLY A 69 ARG A 83 1 15 HELIX 6 6 ASP A 97 GLY A 111 1 15 HELIX 7 7 LEU A 142 PHE A 148 5 7 HELIX 8 8 ASN A 153 ALA A 158 1 6 HELIX 9 9 TYR A 169 ALA A 173 5 5 HELIX 10 10 PRO A 175 GLY A 187 1 13 HELIX 11 11 ALA A 199 TYR A 206 1 8 HELIX 12 12 TYR A 206 HIS A 216 1 11 HELIX 13 13 GLU A 224 HIS A 234 1 11 HELIX 14 14 LYS A 241 GLU A 254 1 14 HELIX 15 15 ALA A 306 ILE A 310 5 5 HELIX 16 16 GLY A 315 GLN A 330 1 16 HELIX 17 17 THR A 333 ILE A 349 1 17 SHEET 1 A 9 ALA A 113 ALA A 119 0 SHEET 2 A 9 ALA A 88 GLY A 95 1 N ILE A 94 O ALA A 119 SHEET 3 A 9 VAL A 15 ILE A 18 1 N VAL A 15 O GLY A 89 SHEET 4 A 9 ILE A 163 THR A 167 1 O TYR A 165 N PHE A 16 SHEET 5 A 9 ILE A 192 ASN A 196 1 O THR A 194 N PHE A 164 SHEET 6 A 9 ILE A 219 ASN A 223 1 O PHE A 221 N LEU A 195 SHEET 7 A 9 LEU A 274 ARG A 279 1 O VAL A 276 N LEU A 220 SHEET 8 A 9 ASN A 282 GLN A 289 -1 O ILE A 285 N MET A 277 SHEET 9 A 9 VAL A 295 VAL A 300 -1 O HIS A 298 N ALA A 286 SHEET 1 B 5 ALA A 44 LEU A 46 0 SHEET 2 B 5 GLU A 135 HIS A 141 1 O THR A 140 N THR A 45 SHEET 3 B 5 GLY A 125 ASN A 132 -1 N ALA A 128 O CYS A 139 SHEET 4 B 5 ILE A 22 GLU A 28 1 N LEU A 25 O VAL A 129 SHEET 5 B 5 THR A 64 GLY A 68 -1 O LEU A 66 N ASP A 24 LINK O1B ACP A 799 MG MG A 999 1555 1555 2.29 LINK MG MG A 999 O HOH A1118 1555 1555 2.25 SITE 1 AC1 2 ACP A 799 HOH A1118 SITE 1 AC2 5 GLY A 19 ASN A 20 ALA A 71 THR A 167 SITE 2 AC2 5 ADN A 699 SITE 1 AC3 16 ASN A 20 ILE A 22 ASP A 24 GLY A 68 SITE 2 AC3 16 GLY A 69 SER A 70 ASN A 73 THR A 140 SITE 3 AC3 16 TYR A 169 ASN A 314 ASP A 318 ACP A 799 SITE 4 AC3 16 CL A 899 HOH A1038 HOH A1092 HOH A1093 SITE 1 AC4 27 ARG A 136 ASN A 223 THR A 278 GLY A 280 SITE 2 AC4 27 HIS A 281 VAL A 284 VAL A 302 THR A 313 SITE 3 AC4 27 ASN A 314 GLY A 315 ALA A 316 GLY A 317 SITE 4 AC4 27 ASP A 318 ASN A 342 ALA A 345 GLN A 346 SITE 5 AC4 27 ADN A 699 MG A 999 HOH A1045 HOH A1058 SITE 6 AC4 27 HOH A1112 HOH A1118 HOH A1132 HOH A1143 SITE 7 AC4 27 HOH A1159 HOH A1164 HOH A1167 CRYST1 167.800 47.100 44.450 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022497 0.00000