PDB Short entry for 1LJM HEADER TRANSCRIPTION 22-APR-02 1LJM TITLE DNA RECOGNITION IS MEDIATED BY CONFORMATIONAL TRANSITION AND BY DNA TITLE 2 BENDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUNX1 TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RUNT DOMAIN; COMPND 5 SYNONYM: RUNT-RELATED TRANSCRIPTION FACTOR 1, ACUTE MYELOID LEUKEMIA COMPND 6 1 PROTEIN, CORE-BINDING FACTOR, ALPHA 2 SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUMAN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PHS2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PV/8+LAMBDAPL+RBS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: RUNT-PV-8 KEYWDS IMMUNOGLOBULIN FOLD, BETA-SANDWICH, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.BARTFELD,L.SHIMON,G.C.COUTURE,D.RABINOVICH,F.FROLOW,D.LEVANON, AUTHOR 2 Y.GRONER,Z.SHAKKED REVDAT 3 16-AUG-23 1LJM 1 REMARK REVDAT 2 24-FEB-09 1LJM 1 VERSN REVDAT 1 06-NOV-02 1LJM 0 JRNL AUTH D.BARTFELD,L.SHIMON,G.COUTURE,D.RABINOVICH,F.FROLOW, JRNL AUTH 2 D.LEVANON,Y.GRONER,Z.SHAKKED JRNL TITL DNA RECOGNITION BY THE RUNX1 TRANSCRIPTION FACTOR IS JRNL TITL 2 MEDIATED BY AN ALLOSTERIC TRANSITION IN THE RUNT DOMAIN AND JRNL TITL 3 BY DNA BENDING. JRNL REF STRUCTURE V. 10 1395 JRNL REFN ISSN 0969-2126 JRNL PMID 12377125 JRNL DOI 10.1016/S0969-2126(02)00853-5 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 43.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 3.800 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000016000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17379 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MTF, ULTIMA REMARK 200 STARTING MODEL: PDB ENTRY 1E50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETHANOL, SODIUM CHLORIDE, TRIS-HCL, REMARK 280 HEPES, DTT, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.61500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.99609 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.11000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.61500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.99609 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.11000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.61500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.99609 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.11000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.61500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.99609 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 62.11000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.61500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.99609 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 62.11000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.61500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.99609 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.11000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.99217 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 124.22000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 69.99217 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 124.22000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 69.99217 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 124.22000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 69.99217 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 124.22000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 69.99217 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 124.22000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 69.99217 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 124.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -60.61500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 34.99609 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.11000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -60.61500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 34.99609 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.11000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3114 LIES ON A SPECIAL POSITION. REMARK 375 HOH B3112 LIES ON A SPECIAL POSITION. REMARK 375 HOH B3148 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1051 REMARK 465 VAL A 1052 REMARK 465 GLU A 1053 REMARK 465 VAL A 1054 REMARK 465 LEU A 1055 REMARK 465 ALA A 1056 REMARK 465 ASP A 1057 REMARK 465 HIS A 1058 REMARK 465 PRO A 1059 REMARK 465 GLY A 1060 REMARK 465 GLU A 1175 REMARK 465 PRO A 1176 REMARK 465 ARG A 1177 REMARK 465 ARG A 1178 REMARK 465 HIS A 1179 REMARK 465 ARG A 1180 REMARK 465 GLN A 1181 REMARK 465 MET B 2051 REMARK 465 VAL B 2052 REMARK 465 GLU B 2053 REMARK 465 VAL B 2054 REMARK 465 LEU B 2055 REMARK 465 ALA B 2056 REMARK 465 ASP B 2057 REMARK 465 HIS B 2058 REMARK 465 PRO B 2059 REMARK 465 ARG B 2174 REMARK 465 GLU B 2175 REMARK 465 PRO B 2176 REMARK 465 ARG B 2177 REMARK 465 ARG B 2178 REMARK 465 HIS B 2179 REMARK 465 ARG B 2180 REMARK 465 GLN B 2181 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1065 -166.72 -103.10 REMARK 500 ASN A1082 11.93 57.27 REMARK 500 THR B2065 -168.58 -116.15 REMARK 500 ASP B2096 84.62 61.79 REMARK 500 SER B2114 98.15 -164.46 REMARK 500 ASP B2133 70.13 49.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 4003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 4004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 4005 DBREF 1LJM A 1051 1181 UNP Q01196 RUNX1_HUMAN 51 181 DBREF 1LJM B 2051 2181 UNP Q01196 RUNX1_HUMAN 51 181 SEQRES 1 A 131 MET VAL GLU VAL LEU ALA ASP HIS PRO GLY GLU LEU VAL SEQRES 2 A 131 ARG THR ASP SER PRO ASN PHE LEU CYS SER VAL LEU PRO SEQRES 3 A 131 THR HIS TRP ARG CYS ASN LYS THR LEU PRO ILE ALA PHE SEQRES 4 A 131 LYS VAL VAL ALA LEU GLY ASP VAL PRO ASP GLY THR LEU SEQRES 5 A 131 VAL THR VAL MET ALA GLY ASN ASP GLU ASN TYR SER ALA SEQRES 6 A 131 GLU LEU ARG ASN ALA THR ALA ALA MET LYS ASN GLN VAL SEQRES 7 A 131 ALA ARG PHE ASN ASP LEU ARG PHE VAL GLY ARG SER GLY SEQRES 8 A 131 ARG GLY LYS SER PHE THR LEU THR ILE THR VAL PHE THR SEQRES 9 A 131 ASN PRO PRO GLN VAL ALA THR TYR HIS ARG ALA ILE LYS SEQRES 10 A 131 ILE THR VAL ASP GLY PRO ARG GLU PRO ARG ARG HIS ARG SEQRES 11 A 131 GLN SEQRES 1 B 131 MET VAL GLU VAL LEU ALA ASP HIS PRO GLY GLU LEU VAL SEQRES 2 B 131 ARG THR ASP SER PRO ASN PHE LEU CYS SER VAL LEU PRO SEQRES 3 B 131 THR HIS TRP ARG CYS ASN LYS THR LEU PRO ILE ALA PHE SEQRES 4 B 131 LYS VAL VAL ALA LEU GLY ASP VAL PRO ASP GLY THR LEU SEQRES 5 B 131 VAL THR VAL MET ALA GLY ASN ASP GLU ASN TYR SER ALA SEQRES 6 B 131 GLU LEU ARG ASN ALA THR ALA ALA MET LYS ASN GLN VAL SEQRES 7 B 131 ALA ARG PHE ASN ASP LEU ARG PHE VAL GLY ARG SER GLY SEQRES 8 B 131 ARG GLY LYS SER PHE THR LEU THR ILE THR VAL PHE THR SEQRES 9 B 131 ASN PRO PRO GLN VAL ALA THR TYR HIS ARG ALA ILE LYS SEQRES 10 B 131 ILE THR VAL ASP GLY PRO ARG GLU PRO ARG ARG HIS ARG SEQRES 11 B 131 GLN HET CL A4003 1 HET CL B4001 1 HET CL B4002 1 HET CL B4004 1 HET CL B4005 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 5(CL 1-) FORMUL 8 HOH *201(H2 O) SHEET 1 A 4 LEU A1062 ARG A1064 0 SHEET 2 A 4 PHE A1070 SER A1073 -1 O CYS A1072 N VAL A1063 SHEET 3 A 4 LYS A1090 ALA A1093 -1 O VAL A1092 N LEU A1071 SHEET 4 A 4 VAL A1128 ARG A1130 -1 O ALA A1129 N VAL A1091 SHEET 1 B 2 HIS A1078 ARG A1080 0 SHEET 2 B 2 LYS A1167 THR A1169 1 O LYS A1167 N TRP A1079 SHEET 1 C 4 THR A1121 ALA A1123 0 SHEET 2 C 4 LEU A1102 GLY A1108 -1 N VAL A1103 O ALA A1122 SHEET 3 C 4 THR A1147 VAL A1152 -1 O THR A1149 N MET A1106 SHEET 4 C 4 GLN A1158 THR A1161 -1 O ALA A1160 N ILE A1150 SHEET 1 D 2 LEU A1117 ARG A1118 0 SHEET 2 D 2 ARG A1135 PHE A1136 -1 O ARG A1135 N ARG A1118 SHEET 1 E 4 VAL B2063 ARG B2064 0 SHEET 2 E 4 PHE B2070 CYS B2072 -1 O CYS B2072 N VAL B2063 SHEET 3 E 4 LYS B2090 ALA B2093 -1 O VAL B2092 N LEU B2071 SHEET 4 E 4 VAL B2128 ARG B2130 -1 O ALA B2129 N VAL B2091 SHEET 1 F 2 HIS B2078 ARG B2080 0 SHEET 2 F 2 LYS B2167 THR B2169 1 O LYS B2167 N TRP B2079 SHEET 1 G 4 THR B2121 ALA B2123 0 SHEET 2 G 4 LEU B2102 GLY B2108 -1 N VAL B2103 O ALA B2122 SHEET 3 G 4 THR B2147 VAL B2152 -1 O THR B2147 N GLY B2108 SHEET 4 G 4 GLN B2158 THR B2161 -1 O ALA B2160 N ILE B2150 CISPEP 1 ASN A 1155 PRO A 1156 0 0.78 CISPEP 2 ASN B 2155 PRO B 2156 0 0.12 SITE 1 AC1 2 THR B2154 ASN B2155 SITE 1 AC2 2 GLN B2158 HOH B3056 SITE 1 AC3 3 ALA A1115 GLU A1116 GLY A1138 SITE 1 AC4 4 ASN B2112 ALA B2115 GLU B2116 GLY B2138 SITE 1 AC5 3 ARG B2142 THR B2169 VAL B2170 CRYST1 121.230 121.230 186.330 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008249 0.004762 0.000000 0.00000 SCALE2 0.000000 0.009525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005367 0.00000