PDB Short entry for 1LK5 HEADER ISOMERASE 24-APR-02 1LK5 TITLE STRUCTURE OF THE D-RIBOSE-5-PHOSPHATE ISOMERASE FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-RIBOSE-5-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 5.3.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS ALPHA/BETA STRUCTURE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ISHIKAWA,I.MATSUI,F.PAYAN,C.CAMBILLAU,H.ISHIDA,Y.KAWARABAYASI, AUTHOR 2 H.KIKUCHI,A.ROUSSEL REVDAT 4 13-MAR-24 1LK5 1 REMARK LINK REVDAT 3 24-FEB-09 1LK5 1 VERSN REVDAT 2 20-NOV-02 1LK5 1 REMARK REVDAT 1 03-JUL-02 1LK5 0 JRNL AUTH K.ISHIKAWA,I.MATSUI,F.PAYAN,C.CAMBILLAU,H.ISHIDA, JRNL AUTH 2 Y.KAWARABAYASI,H.KIKUCHI,A.ROUSSEL JRNL TITL A HYPERTHERMOSTABLE D-RIBOSE-5-PHOSPHATE ISOMERASE FROM JRNL TITL 2 PYROCOCCUS HORIKOSHII CHARACTERIZATION AND THREE-DIMENSIONAL JRNL TITL 3 STRUCTURE. JRNL REF STRUCTURE V. 10 877 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12057201 JRNL DOI 10.1016/S0969-2126(02)00779-7 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 100845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5101 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 342 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 644 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED ALSO WITH REMARK 3 REFMAC REMARK 4 REMARK 4 1LK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000016018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ESRF; ROTATING ANODE REMARK 200 BEAMLINE : ID14-2; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326; 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NA BUFFER, 0.8M NA REMARK 280 -PHOSPHATE, 0.8M K-PHOSPHATE, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.50850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.46600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.50850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.46600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE TETRAMER IN THE ASYMETRIC REMARK 300 UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 1020 O HOH D 1128 1.56 REMARK 500 O HOH C 1059 O HOH C 1174 1.62 REMARK 500 O HOH A 1092 O HOH A 1197 1.66 REMARK 500 O HOH C 1060 O HOH C 1175 1.73 REMARK 500 O HOH B 1122 O HOH C 1023 1.80 REMARK 500 O HOH B 1028 O HOH C 1173 1.82 REMARK 500 O HOH B 1142 O HOH B 1165 1.86 REMARK 500 O HOH A 1068 O HOH D 1127 1.88 REMARK 500 O HOH B 1120 O HOH B 1139 1.91 REMARK 500 O HOH A 1113 O HOH B 1139 1.93 REMARK 500 O HOH A 1023 O HOH A 1167 1.94 REMARK 500 O HOH A 1068 O HOH D 1140 1.97 REMARK 500 O HOH B 1028 O HOH C 1172 1.98 REMARK 500 O HOH A 1196 O HOH C 1108 1.99 REMARK 500 O HOH D 1106 O HOH D 1139 1.99 REMARK 500 OE2 GLU B 150 O HOH B 1162 1.99 REMARK 500 O HOH B 1122 O HOH B 1161 2.02 REMARK 500 SD MET A 106 NE2 GLN B 143 2.03 REMARK 500 OG SER C 73 NE2 GLN C 76 2.05 REMARK 500 O HOH A 1127 O HOH A 1196 2.06 REMARK 500 O HOH C 1172 O HOH C 1173 2.09 REMARK 500 OG SER D 73 NE2 GLN D 76 2.09 REMARK 500 OE1 GLU B 66 O HOH B 1167 2.09 REMARK 500 OE1 GLU D 4 OH TYR D 34 2.11 REMARK 500 O HOH A 1172 O HOH B 1095 2.12 REMARK 500 O HOH B 1119 O HOH B 1170 2.12 REMARK 500 O HOH C 1064 O HOH C 1164 2.13 REMARK 500 OE2 GLU A 66 O HOH A 1118 2.15 REMARK 500 O HOH D 1094 O HOH D 1109 2.15 REMARK 500 O HOH C 1046 O HOH C 1175 2.15 REMARK 500 O GLU B 150 OG SER B 153 2.16 REMARK 500 O HOH D 1044 O HOH D 1141 2.16 REMARK 500 O HOH A 1113 O HOH B 1120 2.16 REMARK 500 O HOH D 1031 O HOH D 1142 2.17 REMARK 500 OE2 GLU A 160 O HOH A 1187 2.17 REMARK 500 OE1 GLN A 143 SD MET B 106 2.17 REMARK 500 O HOH B 1118 O HOH D 1134 2.17 REMARK 500 O HOH B 1161 O HOH C 1023 2.18 REMARK 500 O HOH B 1093 O HOH B 1168 2.18 REMARK 500 O HOH A 1143 O HOH C 1113 2.18 REMARK 500 O HOH B 1032 O HOH B 1140 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 188 O HOH A 1166 3546 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 50 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 91 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 91 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP D 91 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP D 211 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 212 -39.48 -140.25 REMARK 500 CYS B 131 10.40 80.49 REMARK 500 ILE B 212 -39.05 -133.94 REMARK 500 ASN C 2 -179.48 -60.91 REMARK 500 ALA C 79 149.04 -173.19 REMARK 500 CYS C 131 15.07 85.28 REMARK 500 ILE C 212 -38.43 -133.77 REMARK 500 CYS D 131 10.80 84.01 REMARK 500 ILE D 212 -41.23 -135.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1011 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 175 O REMARK 620 2 HOH A1016 O 90.5 REMARK 620 3 HOH A1024 O 89.0 168.4 REMARK 620 4 ASN B 175 O 172.4 84.9 96.7 REMARK 620 5 HOH B1016 O 87.0 108.8 82.7 88.8 REMARK 620 6 HOH B1026 O 98.3 81.6 87.0 87.1 168.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C1012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 175 O REMARK 620 2 HOH C1039 O 90.4 REMARK 620 3 HOH C1047 O 89.6 171.2 REMARK 620 4 ASN D 175 O 173.7 85.1 95.5 REMARK 620 5 HOH D1014 O 84.8 106.8 82.0 92.3 REMARK 620 6 HOH D1069 O 96.3 86.9 84.4 87.9 166.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 1012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LK7 RELATED DB: PDB REMARK 900 1LK7 CONTAINS THE SAME PROTEIN COMPLEXED WITH PHOSPHO-ERYTHRONIC REMARK 900 ACID DBREF 1LK5 A 1 229 UNP O50083 RPIA_PYRHO 1 229 DBREF 1LK5 B 1 229 UNP O50083 RPIA_PYRHO 1 229 DBREF 1LK5 C 1 229 UNP O50083 RPIA_PYRHO 1 229 DBREF 1LK5 D 1 229 UNP O50083 RPIA_PYRHO 1 229 SEQRES 1 A 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 A 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 A 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 A 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 A 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 A 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 A 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 A 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 A 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 A 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 A 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 A 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 A 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 A 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 A 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 A 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 A 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 A 229 GLU GLY VAL LYS LYS LEU GLU ARG SEQRES 1 B 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 B 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 B 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 B 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 B 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 B 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 B 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 B 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 B 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 B 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 B 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 B 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 B 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 B 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 B 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 B 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 B 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 B 229 GLU GLY VAL LYS LYS LEU GLU ARG SEQRES 1 C 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 C 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 C 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 C 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 C 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 C 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 C 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 C 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 C 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 C 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 C 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 C 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 C 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 C 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 C 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 C 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 C 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 C 229 GLU GLY VAL LYS LYS LEU GLU ARG SEQRES 1 D 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 D 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 D 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 D 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 D 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 D 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 D 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 D 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 D 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 D 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 D 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 D 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 D 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 D 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 D 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 D 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 D 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 D 229 GLU GLY VAL LYS LYS LEU GLU ARG HET CL A1001 1 HET CL A1005 1 HET CL A1009 1 HET NA A1011 1 HET CL B1002 1 HET CL B1006 1 HET CL B1010 1 HET CL C1003 1 HET CL C1007 1 HET NA C1012 1 HET CL D1004 1 HET CL D1008 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 5 CL 10(CL 1-) FORMUL 8 NA 2(NA 1+) FORMUL 17 HOH *644(H2 O) HELIX 1 1 ASN A 2 LEU A 15 1 14 HELIX 2 2 LYS A 16 ILE A 18 5 3 HELIX 3 3 GLY A 29 ARG A 45 1 17 HELIX 4 4 SER A 57 HIS A 67 1 11 HELIX 5 5 SER A 73 VAL A 77 5 5 HELIX 6 6 ALA A 103 ARG A 113 1 11 HELIX 7 7 ARG A 124 LEU A 126 5 3 HELIX 8 8 ALA A 144 LEU A 152 1 9 HELIX 9 9 SER A 153 ASN A 156 5 4 HELIX 10 10 ASP A 189 THR A 199 1 11 HELIX 11 11 ASN B 2 LYS B 16 1 15 HELIX 12 12 GLY B 29 ARG B 45 1 17 HELIX 13 13 SER B 57 HIS B 67 1 11 HELIX 14 14 SER B 73 VAL B 77 5 5 HELIX 15 15 ALA B 103 TYR B 112 1 10 HELIX 16 16 ARG B 124 LEU B 126 5 3 HELIX 17 17 ALA B 144 SER B 153 1 10 HELIX 18 18 ILE B 154 ASN B 156 5 3 HELIX 19 19 ASP B 189 THR B 199 1 11 HELIX 20 20 ASN C 2 LEU C 15 1 14 HELIX 21 21 LYS C 16 ILE C 18 5 3 HELIX 22 22 GLY C 29 ARG C 45 1 17 HELIX 23 23 SER C 57 HIS C 67 1 11 HELIX 24 24 SER C 73 VAL C 77 5 5 HELIX 25 25 ALA C 103 ARG C 113 1 11 HELIX 26 26 ARG C 124 LEU C 126 5 3 HELIX 27 27 ALA C 144 PHE C 155 1 12 HELIX 28 28 ASP C 189 ASN C 198 1 10 HELIX 29 29 ASN D 2 LYS D 16 1 15 HELIX 30 30 GLY D 29 ARG D 45 1 17 HELIX 31 31 SER D 57 HIS D 67 1 11 HELIX 32 32 SER D 73 VAL D 77 5 5 HELIX 33 33 ALA D 103 ARG D 113 1 11 HELIX 34 34 ARG D 124 LEU D 126 5 3 HELIX 35 35 ALA D 144 LEU D 152 1 9 HELIX 36 36 SER D 153 ASN D 156 5 4 HELIX 37 37 ASP D 189 THR D 199 1 11 SHEET 1 A 6 VAL A 52 PRO A 55 0 SHEET 2 A 6 VAL A 23 LEU A 26 1 N ILE A 24 O VAL A 52 SHEET 3 A 6 ILE A 80 ASP A 85 1 O VAL A 84 N GLY A 25 SHEET 4 A 6 ALA A 114 ASP A 122 1 O ILE A 118 N ALA A 83 SHEET 5 A 6 ILE A 215 THR A 220 1 O ILE A 217 N VAL A 119 SHEET 6 A 6 GLY A 223 GLU A 228 -1 O LYS A 225 N VAL A 218 SHEET 1 B 3 GLU A 89 VAL A 90 0 SHEET 2 B 3 LEU A 96 ILE A 97 -1 O ILE A 97 N GLU A 89 SHEET 3 B 3 ILE A 208 PHE A 209 -1 O PHE A 209 N LEU A 96 SHEET 1 C 4 LYS A 158 LEU A 161 0 SHEET 2 C 4 PHE A 178 LYS A 183 -1 O ASP A 181 N GLU A 160 SHEET 3 C 4 VAL A 136 VAL A 140 -1 N VAL A 136 O ALA A 182 SHEET 4 C 4 VAL A 203 ASN A 206 -1 O ILE A 204 N GLU A 139 SHEET 1 D 6 VAL B 52 PRO B 55 0 SHEET 2 D 6 VAL B 23 LEU B 26 1 N ILE B 24 O VAL B 52 SHEET 3 D 6 ILE B 80 ASP B 85 1 O VAL B 82 N GLY B 25 SHEET 4 D 6 ALA B 114 ASP B 122 1 O ILE B 118 N ALA B 83 SHEET 5 D 6 ILE B 215 GLY B 219 1 O ILE B 217 N VAL B 119 SHEET 6 D 6 VAL B 224 GLU B 228 -1 O LEU B 227 N VAL B 216 SHEET 1 E 3 GLU B 89 VAL B 90 0 SHEET 2 E 3 LEU B 96 ILE B 97 -1 O ILE B 97 N GLU B 89 SHEET 3 E 3 ILE B 208 PHE B 209 -1 O PHE B 209 N LEU B 96 SHEET 1 F 4 LYS B 158 LEU B 161 0 SHEET 2 F 4 PHE B 178 LYS B 183 -1 O ASP B 181 N GLU B 160 SHEET 3 F 4 VAL B 136 VAL B 140 -1 N VAL B 136 O ALA B 182 SHEET 4 F 4 VAL B 203 ASN B 206 -1 O ILE B 204 N GLU B 139 SHEET 1 G 6 ILE C 51 PRO C 55 0 SHEET 2 G 6 MET C 22 LEU C 26 1 N ILE C 24 O VAL C 52 SHEET 3 G 6 ILE C 80 GLY C 86 1 O VAL C 84 N GLY C 25 SHEET 4 G 6 ALA C 114 ASP C 122 1 O ILE C 118 N ALA C 83 SHEET 5 G 6 ILE C 215 THR C 220 1 O ILE C 217 N VAL C 119 SHEET 6 G 6 GLY C 223 GLU C 228 -1 O LYS C 225 N VAL C 218 SHEET 1 H 3 GLU C 89 VAL C 90 0 SHEET 2 H 3 LEU C 96 ILE C 97 -1 O ILE C 97 N GLU C 89 SHEET 3 H 3 ILE C 208 PHE C 209 -1 O PHE C 209 N LEU C 96 SHEET 1 I 4 LYS C 158 LEU C 161 0 SHEET 2 I 4 PHE C 178 LYS C 183 -1 O LYS C 183 N LYS C 158 SHEET 3 I 4 VAL C 136 VAL C 140 -1 N VAL C 136 O ALA C 182 SHEET 4 I 4 VAL C 203 ASN C 206 -1 O ILE C 204 N GLU C 139 SHEET 1 J 6 VAL D 52 PRO D 55 0 SHEET 2 J 6 VAL D 23 LEU D 26 1 N ILE D 24 O VAL D 52 SHEET 3 J 6 ILE D 80 ASP D 85 1 O VAL D 82 N GLY D 25 SHEET 4 J 6 ALA D 114 ASP D 122 1 O ILE D 118 N ALA D 83 SHEET 5 J 6 ILE D 215 THR D 220 1 O ILE D 217 N VAL D 119 SHEET 6 J 6 GLY D 223 GLU D 228 -1 O LYS D 225 N VAL D 218 SHEET 1 K 3 GLU D 89 VAL D 90 0 SHEET 2 K 3 LEU D 96 ILE D 97 -1 O ILE D 97 N GLU D 89 SHEET 3 K 3 ILE D 208 PHE D 209 -1 O PHE D 209 N LEU D 96 SHEET 1 L 4 LYS D 158 LEU D 161 0 SHEET 2 L 4 PHE D 178 LYS D 183 -1 O LYS D 183 N LYS D 158 SHEET 3 L 4 VAL D 136 VAL D 140 -1 N VAL D 136 O ALA D 182 SHEET 4 L 4 VAL D 203 ASN D 206 -1 O ILE D 204 N GLU D 139 LINK O ASN A 175 NA NA A1011 1555 1555 2.29 LINK NA NA A1011 O HOH A1016 1555 1555 2.53 LINK NA NA A1011 O HOH A1024 1555 1555 2.35 LINK NA NA A1011 O ASN B 175 1555 1555 2.32 LINK NA NA A1011 O HOH B1016 1555 1555 2.52 LINK NA NA A1011 O HOH B1026 1555 1555 2.37 LINK O ASN C 175 NA NA C1012 1555 1555 2.35 LINK NA NA C1012 O HOH C1039 1555 1555 2.54 LINK NA NA C1012 O HOH C1047 1555 1555 2.40 LINK NA NA C1012 O ASN D 175 1555 1555 2.34 LINK NA NA C1012 O HOH D1014 1555 1555 2.47 LINK NA NA C1012 O HOH D1069 1555 1555 2.25 SITE 1 AC1 5 GLY A 99 GLY A 101 ALA A 102 ALA A 103 SITE 2 AC1 5 GLU A 107 SITE 1 AC2 6 GLY B 99 GLY B 101 ALA B 102 ALA B 103 SITE 2 AC2 6 GLU B 107 HOH B1017 SITE 1 AC3 5 GLY C 99 GLY C 101 ALA C 102 ALA C 103 SITE 2 AC3 5 GLU C 107 SITE 1 AC4 6 GLY D 99 GLY D 101 ALA D 102 ALA D 103 SITE 2 AC4 6 GLU D 107 HOH D1020 SITE 1 AC5 7 SER A 57 TYR A 58 GLN A 59 ASP A 174 SITE 2 AC5 7 LYS C 167 ASP C 168 GLY C 169 SITE 1 AC6 6 TYR B 58 GLN B 59 ASP B 174 LYS D 167 SITE 2 AC6 6 ASP D 168 GLY D 169 SITE 1 AC7 7 LYS A 167 ASP A 168 GLY A 169 SER C 57 SITE 2 AC7 7 TYR C 58 GLN C 59 ASP C 174 SITE 1 AC8 7 LYS B 167 ASP B 168 GLY B 169 SER D 57 SITE 2 AC8 7 TYR D 58 GLN D 59 ASP D 174 SITE 1 AC9 4 VAL A 165 ASN A 166 VAL C 165 ASN C 166 SITE 1 BC1 4 VAL B 165 ASN B 166 VAL D 165 ASN D 166 SITE 1 BC2 6 ASN A 175 HOH A1016 HOH A1024 ASN B 175 SITE 2 BC2 6 HOH B1016 HOH B1026 SITE 1 BC3 6 ASN C 175 HOH C1039 HOH C1047 ASN D 175 SITE 2 BC3 6 HOH D1014 HOH D1069 CRYST1 73.548 114.932 119.017 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008402 0.00000